F294137

General Info

Members Datasets Scaffolds Average Seq Length
191 122 382 496

Family's Representative Sequence

Representative Sequence 3300025921|Ga0207652_10023755|Ga0207652_100237554
Length 539
Sequence MTHTALKSAPKNSIIRGEMTEGMDQQLALEIMLDGHNVLLTGPAGSGKTFVLNEFIRRAKKQGKYVAVTATTGLAATHLGGNTIHAWSGIGISDHLGKFWEENLLKGRRDIIEATDVLIIDEISMLHDFRLDMVDEAARKVRKDERPFGGIQVILCGDFFQLPPVNRRDEERSGGFVVGAEVWEELDPVVCYLTEQHRQNDDAYLEILNAMRAGDVRRRHAEMLLERVGAPLEHPEVTELHTVNIDVDRINEARLAAIDGGEEYYEMTTTGKENYVETLKRSCLAVETLVLKKGALVMAIKNNQEKRYANGTLGTVVDFEEETHYPVVELHSGRKVVMTPETWELRDGTKKRASITQIPLRLAWAITVHKSQGMTLDAARVDLRNAFVEGMGYVALSRVRNLQNLSLMGINRMALQISPEALEIDKHLRTKSDQDAARFEYLRERAREREAIEKTQPKKKAASSGGWSDKLAQMREQYPNAFKPWKSNEDERLMSLFQDGKPHTIKELTKEFGRHPGSIRARLKKHFGEDAVVELKAKR

Samples

Sample ID Description Type Environment
1 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
5 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
6 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
7 3300002244 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1 Metagenome Rhizosphere
8 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
9 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
10 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
11 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
12 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
13 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
14 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
15 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
16 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
17 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
18 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
22 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
23 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
24 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
25 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
26 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
27 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
28 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
29 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
30 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
31 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
32 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
33 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
34 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
35 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
36 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
39 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
40 3300009993 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
43 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
44 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
45 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
46 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
47 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
48 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
49 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
50 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
51 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
67 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
68 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
69 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
70 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
71 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
72 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
73 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
74 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
75 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
76 3300034820 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 Metagenome Rhizosphere
77 3300034957 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_2 Metagenome Rhizosphere
78 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
79 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
80 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
81 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
82 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
83 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
84 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
85 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
86 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
87 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
88 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
89 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
90 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
91 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
92 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
93 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
94 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
95 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
98 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
99 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
100 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
101 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
102 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
103 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
104 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
105 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
106 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
107 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
108 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
109 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
110 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
111 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
112 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
113 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
114 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
115 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
116 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
117 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
118 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
119 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
120 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
121 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
122 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 28.8
Nodule 0
Rhizoplane 0.52
Rhizosphere 66.49
Stem 0
Stem Tuber 0
Unclassified 6.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207652_10023755 3300025921 Bacteria 5082
2 JGI24740J21852_10002071 3300001979 Bacteria 9165
3 JGI24739J22299_10002962 3300001989 Bacteria 6507
4 JGI24737J22298_10000154 3300001990 Bacteria 21502
5 JGI24735J21928_10000026 3300002067 Bacteria 88519
6 JGI24738J21930_10000140 3300002075 Bacteria 17748
7 JGI24742J22300_10000039 3300002244 Bacteria 19127
8 rootH1_10004272 3300003316 Bacteria 47548
9 rootH2_10000659 3300003320 Bacteria 146718
10 rootL2_10010233 3300003322 Bacteria 8447
11 rootL2_10055309 3300003322 Bacteria 7921
12 rootH1_10023936 3300003323 Bacteria 45920
13 rootH1_10119032 3300003323 Bacteria 5304
14 Ga0070658_10000035 3300005327 Bacteria 145828
15 Ga0070676_10006606 3300005328 Bacteria 6204
16 Ga0070670_100008851 3300005331 Bacteria 8594
17 Ga0070660_100000661 3300005339 Bacteria 22752
18 Ga0070661_100004577 3300005344 Bacteria 9513
19 Ga0070661_100011746 3300005344 Bacteria 6110
20 Ga0070659_100002025 3300005366 Bacteria 14493
21 Ga0070662_100022488 3300005457 Unclassified 4318
22 Ga0070679_100000219 3300005530 Bacteria 46654
23 Ga0068855_100000050 3300005563 Bacteria 143762
24 Ga0068855_100000138 3300005563 Bacteria 92676
25 Ga0068855_100069937 3300005563 Bacteria 4084
26 Ga0070664_100001176 3300005564 Bacteria 20820
27 Ga0068857_100000117 3300005577 Bacteria 47726
28 Ga0068856_100000354 3300005614 Bacteria 50023
29 Ga0068856_100001533 3300005614 Bacteria 24205
30 Ga0068852_100000044 3300005616 Bacteria 89653
31 Ga0068852_100000051 3300005616 Bacteria 81538
32 Ga0081455_10000006 3300005937 Bacteria 323066
33 Ga0075365_10000002 3300006038 Bacteria 226306
34 Ga0075365_10000407 3300006038 Bacteria 15813
35 Ga0075365_10000506 3300006038 Bacteria 14849
36 Ga0075365_10007304 3300006038 Bacteria 6176
37 Ga0075365_10081624 3300006038 Bacteria 2191
38 Ga0075364_10004883 3300006051 Bacteria 7767
39 Ga0075364_10011449 3300006051 Bacteria 5389
40 Ga0075362_10002647 3300006177 Bacteria 6076
41 Ga0075367_10000084 3300006178 Bacteria 25086
42 Ga0075367_10018098 3300006178 Unclassified 3881
43 Ga0075369_10000047 3300006186 Bacteria 31293
44 Ga0075369_10003468 3300006186 Bacteria 5743
45 Ga0075366_10000001 3300006195 Bacteria 569172
46 Ga0075366_10000268 3300006195 Bacteria 23079
47 Ga0075366_10005715 3300006195 Bacteria 6751
48 Ga0068871_100020316 3300006358 Bacteria 5087
49 Ga0075428_100001954 3300006844 Bacteria 22156
50 Ga0068865_100000316 3300006881 Bacteria 26705
51 Ga0105240_10000004 3300009093 Bacteria 708156
52 Ga0105240_10001060 3300009093 Bacteria 48667
53 Ga0105240_10007510 3300009093 Bacteria 15821
54 Ga0105240_10048189 3300009093 Bacteria 5387
55 Ga0105241_10003121 3300009174 Bacteria 12329
56 Ga0105241_10006455 3300009174 Bacteria 8645
57 Ga0105237_10000001 3300009545 Bacteria 1009213
58 Ga0105237_10000002 3300009545 Bacteria 702357
59 Ga0105238_10008260 3300009551 Bacteria 10413
60 Ga0105238_10086363 3300009551 Unclassified 3125
61 Ga0105032_100003 3300009979 Bacteria 186985
62 Ga0105032_100004 3300009979 Bacteria 172013
63 Ga0105028_100016 3300009993 Bacteria 23824
64 Ga0105028_102996 3300009993 Unclassified 1771
65 Ga0105239_10002291 3300010375 Bacteria 24455
66 Ga0105239_10071102 3300010375 Bacteria 3823
67 Ga0105246_10001853 3300011119 Bacteria 12707
68 Ga0105246_10058588 3300011119 Bacteria 2669
69 Ga0105246_10181622 3300011119 Bacteria 1620
70 Ga0157373_10009734 3300013100 Bacteria 7092
71 Ga0157373_10086839 3300013100 Bacteria 2204
72 Ga0157371_10001228 3300013102 Bacteria 27259
73 Ga0157371_10020937 3300013102 Bacteria 4808
74 Ga0157371_10023494 3300013102 Bacteria 4508
75 Ga0157370_10000259 3300013104 Bacteria 67045
76 Ga0157370_10000924 3300013104 Bacteria 37267
77 Ga0157370_10011793 3300013104 Bacteria 9121
78 Ga0157369_10000024 3300013105 Bacteria 225851
79 Ga0157369_10000177 3300013105 Bacteria 89168
80 Ga0157369_10001021 3300013105 Bacteria 35270
81 Ga0157369_10015217 3300013105 Bacteria 8683
82 Ga0157369_10015477 3300013105 Bacteria 8595
83 Ga0157374_10020796 3300013296 Bacteria 5827
84 Ga0157372_10000002 3300013307 Bacteria 687862
85 Ga0157372_10055268 3300013307 Unclassified 4433
86 Ga0157377_10000895 3300014745 Bacteria 12436
87 Ga0157376_10000138 3300014969 Bacteria 49656
88 Ga0157376_10075726 3300014969 Bacteria 2873
89 Ga0207647_10010759 3300025904 Bacteria 6443
90 Ga0207705_10000010 3300025909 Bacteria 518023
91 Ga0207654_10022505 3300025911 Bacteria 3363
92 Ga0207654_10061445 3300025911 Unclassified 2198
93 Ga0207695_10000009 3300025913 Bacteria 1034276
94 Ga0207695_10010821 3300025913 Bacteria 11119
95 Ga0207695_10024249 3300025913 Bacteria 6830
96 Ga0207695_10027828 3300025913 Bacteria 6286
97 Ga0207671_10000003 3300025914 Bacteria 1065461
98 Ga0207671_10000008 3300025914 Bacteria 798229
99 Ga0207657_10001872 3300025919 Bacteria 22760
100 Ga0207657_10006069 3300025919 Bacteria 12567
101 Ga0207652_10003984 3300025921 Bacteria 12066
102 Ga0207694_10016842 3300025924 Bacteria 5521
103 Ga0207694_10100035 3300025924 Bacteria 2297
104 Ga0207650_10085714 3300025925 Bacteria 2397
105 Ga0207706_10000053 3300025933 Bacteria 114286
106 Ga0207704_10003308 3300025938 Bacteria 7318
107 Ga0207679_10000125 3300025945 Bacteria 62810
108 Ga0207667_10000005 3300025949 Bacteria 715503
109 Ga0207667_10000096 3300025949 Bacteria 143776
110 Ga0207667_10012996 3300025949 Bacteria 9557
111 Ga0207702_10000100 3300026078 Bacteria 99927
112 Ga0207702_10000112 3300026078 Bacteria 94838
113 Ga0207674_10000590 3300026116 Bacteria 47749
114 Ga0207698_10000022 3300026142 Bacteria 131985
115 Ga0207698_10001332 3300026142 Bacteria 14412
116 Ga0209813_10000998 3300027866 Bacteria 6346
117 Ga0209974_10006447 3300027876 Bacteria 4097
118 Ga0314311_1002166 3300030733 Unclassified 2367
119 Ga0316183_1021264 3300030742 Bacteria 9976
120 Ga0316183_1207016 3300030742 Bacteria 18666
121 Ga0316181_1063761 3300030744 Bacteria 284591
122 Ga0316182_1032284 3300030745 Bacteria 44674
123 Ga0316182_1324204 3300030745 Bacteria 8084
124 Ga0307509_10092862 3300031507 Unclassified 3083
125 Ga0307516_10005612 3300031730 Bacteria 14941
126 Ga0307405_10054210 3300031731 Bacteria 2502
127 Ga0307406_10000002 3300031901 Bacteria 255753
128 Ga0307406_10000434 3300031901 Bacteria 24378
129 Ga0373959_0000014 3300034820 Bacteria 43858
130 Ga0373938_0005496 3300034957 Unclassified 2157
131 Ga0395899_0016560 3300037312 Bacteria 5624
132 Ga0395900_0000001 3300037418 Bacteria 931146
133 Ga0395898_0000002 3300037466 Bacteria 931013
134 Ga0395901_0000400 3300038443 Bacteria 51851
135 Ga0439461_0000387 3300041410 Bacteria 6291
136 Ga0439445_0000958 3300042004 Bacteria 6151
137 Ga0439432_000759 3300042006 Bacteria 12073
138 Ga0439463_004393 3300042016 Bacteria 3534
139 Ga0450920_002135 3300042122 Bacteria 3345
140 Ga0439446_0000005 3300042156 Bacteria 101649
141 Ga0439464_0000010 3300042439 Bacteria 27492
142 Ga0466965_0000074 3300044683 Bacteria 29807
143 Ga0451576_0010683 3300045051 Bacteria 10517
144 Ga0495638_0000173 3300046460 Bacteria 100531
145 Ga0495638_0000557 3300046460 Bacteria 42474
146 Ga0495660_0000035 3300046810 Bacteria 199140
147 Ga0495686_0037777 3300047472 Bacteria 3092
148 Ga0496115_0000273 3300048918 Bacteria 45346
149 Ga0501034_0000333 3300049571 Bacteria 82475
150 Ga0501034_0005828 3300049571 Bacteria 13402
151 Ga0501037_0000001 3300049573 Bacteria 753276
152 Ga0501038_0021741 3300049574 Bacteria 5756
153 nmdc:mga03n38_46562_c1 3300050490 Unclassified 1915
154 nmdc:mga00v17_39870_c1 3300050491 Bacteria 2814
155 nmdc:mga00v17_407_c1 3300050491 Bacteria 24392
156 nmdc:mga00v17_4989_c1 3300050491 Bacteria 6964
157 nmdc:mga0yw44_13_c1 3300050492 Bacteria 120183
158 nmdc:mga0yw44_19_c1 3300050492 Bacteria 70600
159 nmdc:mga0yw44_318_c1 3300050492 Bacteria 16768
160 nmdc:mga0yw44_3_c1 3300050492 Bacteria 561857
161 nmdc:mga0yw44_6_c1 3300050492 Bacteria 272478
162 nmdc:mga0yw44_9794_c1 3300050492 Bacteria 2191
163 nmdc:mga0k408_117_c1 3300050493 Bacteria 5754
164 nmdc:mga0k408_1_c1 3300050493 Bacteria 1089059
165 nmdc:mga06z11_12441_c1 3300050494 Bacteria 3701
166 nmdc:mga04h51_372_c1 3300050495 Bacteria 11034
167 nmdc:mga07m45_3817_c1 3300050496 Bacteria 1712
168 nmdc:mga07m45_55530_c1 3300050496 Bacteria 2238
169 nmdc:mga0sz30_1543_c1 3300050516 Bacteria 8209
170 nmdc:mga0sz30_4_c2 3300050516 Bacteria 152717
171 Ga0500643_001957 3300053087 Bacteria 11160
172 Ga0500643_004162 3300053087 Bacteria 6636
173 Ga0500644_0006115 3300053088 Unclassified 3070
174 Ga0500644_0030040 3300053088 Unclassified 1715
175 Ga0500646_0000001 3300053090 Bacteria 273936
176 Ga0500646_0019536 3300053090 Bacteria 1793
177 Ga0500583_0001103 3300053092 Bacteria 7704
178 Ga0500651_0000019 3300053093 Bacteria 141974
179 Ga0500651_0000249 3300053093 Bacteria 33002
180 Ga0500641_0000001 3300053096 Bacteria 1115973
181 Ga0500650_0003921 3300053098 Bacteria 5285
182 Ga0500555_000005 3300053103 Bacteria 342334
183 Ga0500569_000004 3300053109 Bacteria 100531
184 Ga0500593_000001 3300053117 Bacteria 784404
185 Ga0500594_0000034 3300053118 Bacteria 44315
186 Ga0500652_000001 3300053131 Bacteria 946868
187 Ga0500655_004245 3300053133 Bacteria 2582
188 Ga0500577_0000205 3300053142 Bacteria 15664
189 Ga0500604_0015221 3300053151 Unclassified 2104
190 Ga0500616_0000067 3300053153 Bacteria 236311
191 Ga0500620_001424 3300053155 Bacteria 4405
192 Ga0207652_10023755
193 JGI24740J21852_10002071
194 JGI24739J22299_10002962
195 JGI24737J22298_10000154
196 JGI24735J21928_10000026
197 JGI24738J21930_10000140
198 JGI24742J22300_10000039
199 rootH1_10004272
200 rootH2_10000659
201 rootL2_10010233
202 rootL2_10055309
203 rootH1_10023936
204 rootH1_10119032
205 Ga0070658_10000035
206 Ga0070676_10006606
207 Ga0070670_100008851
208 Ga0070660_100000661
209 Ga0070661_100004577
210 Ga0070661_100011746
211 Ga0070659_100002025
212 Ga0070662_100022488
213 Ga0070679_100000219
214 Ga0068855_100000050
215 Ga0068855_100000138
216 Ga0068855_100069937
217 Ga0070664_100001176
218 Ga0068857_100000117
219 Ga0068856_100000354
220 Ga0068856_100001533
221 Ga0068852_100000044
222 Ga0068852_100000051
223 Ga0081455_10000006
224 Ga0075365_10000002
225 Ga0075365_10000407
226 Ga0075365_10000506
227 Ga0075365_10007304
228 Ga0075365_10081624
229 Ga0075364_10004883
230 Ga0075364_10011449
231 Ga0075362_10002647
232 Ga0075367_10000084
233 Ga0075367_10018098
234 Ga0075369_10000047
235 Ga0075369_10003468
236 Ga0075366_10000001
237 Ga0075366_10000268
238 Ga0075366_10005715
239 Ga0068871_100020316
240 Ga0075428_100001954
241 Ga0068865_100000316
242 Ga0105240_10000004
243 Ga0105240_10001060
244 Ga0105240_10007510
245 Ga0105240_10048189
246 Ga0105241_10003121
247 Ga0105241_10006455
248 Ga0105237_10000001
249 Ga0105237_10000002
250 Ga0105238_10008260
251 Ga0105238_10086363
252 Ga0105032_100003
253 Ga0105032_100004
254 Ga0105028_100016
255 Ga0105028_102996
256 Ga0105239_10002291
257 Ga0105239_10071102
258 Ga0105246_10001853
259 Ga0105246_10058588
260 Ga0105246_10181622
261 Ga0157373_10009734
262 Ga0157373_10086839
263 Ga0157371_10001228
264 Ga0157371_10020937
265 Ga0157371_10023494
266 Ga0157370_10000259
267 Ga0157370_10000924
268 Ga0157370_10011793
269 Ga0157369_10000024
270 Ga0157369_10000177
271 Ga0157369_10001021
272 Ga0157369_10015217
273 Ga0157369_10015477
274 Ga0157374_10020796
275 Ga0157372_10000002
276 Ga0157372_10055268
277 Ga0157377_10000895
278 Ga0157376_10000138
279 Ga0157376_10075726
280 Ga0207647_10010759
281 Ga0207705_10000010
282 Ga0207654_10022505
283 Ga0207654_10061445
284 Ga0207695_10000009
285 Ga0207695_10010821
286 Ga0207695_10024249
287 Ga0207695_10027828
288 Ga0207671_10000003
289 Ga0207671_10000008
290 Ga0207657_10001872
291 Ga0207657_10006069
292 Ga0207652_10003984
293 Ga0207694_10016842
294 Ga0207694_10100035
295 Ga0207650_10085714
296 Ga0207706_10000053
297 Ga0207704_10003308
298 Ga0207679_10000125
299 Ga0207667_10000005
300 Ga0207667_10000096
301 Ga0207667_10012996
302 Ga0207702_10000100
303 Ga0207702_10000112
304 Ga0207674_10000590
305 Ga0207698_10000022
306 Ga0207698_10001332
307 Ga0209813_10000998
308 Ga0209974_10006447
309 Ga0314311_1002166
310 Ga0316183_1021264
311 Ga0316183_1207016
312 Ga0316181_1063761
313 Ga0316182_1032284
314 Ga0316182_1324204
315 Ga0307509_10092862
316 Ga0307516_10005612
317 Ga0307405_10054210
318 Ga0307406_10000002
319 Ga0307406_10000434
320 Ga0373959_0000014
321 Ga0373938_0005496
322 Ga0395899_0016560
323 Ga0395900_0000001
324 Ga0395898_0000002
325 Ga0395901_0000400
326 Ga0439461_0000387
327 Ga0439445_0000958
328 Ga0439432_000759
329 Ga0439463_004393
330 Ga0450920_002135
331 Ga0439446_0000005
332 Ga0439464_0000010
333 Ga0466965_0000074
334 Ga0451576_0010683
335 Ga0495638_0000173
336 Ga0495638_0000557
337 Ga0495660_0000035
338 Ga0495686_0037777
339 Ga0496115_0000273
340 Ga0501034_0000333
341 Ga0501034_0005828
342 Ga0501037_0000001
343 Ga0501038_0021741
344 nmdc:mga03n38_46562_c1
345 nmdc:mga00v17_39870_c1
346 nmdc:mga00v17_407_c1
347 nmdc:mga00v17_4989_c1
348 nmdc:mga0yw44_13_c1
349 nmdc:mga0yw44_19_c1
350 nmdc:mga0yw44_318_c1
351 nmdc:mga0yw44_3_c1
352 nmdc:mga0yw44_6_c1
353 nmdc:mga0yw44_9794_c1
354 nmdc:mga0k408_117_c1
355 nmdc:mga0k408_1_c1
356 nmdc:mga06z11_12441_c1
357 nmdc:mga04h51_372_c1
358 nmdc:mga07m45_3817_c1
359 nmdc:mga07m45_55530_c1
360 nmdc:mga0sz30_1543_c1
361 nmdc:mga0sz30_4_c2
362 Ga0500643_001957
363 Ga0500643_004162
364 Ga0500644_0006115
365 Ga0500644_0030040
366 Ga0500646_0000001
367 Ga0500646_0019536
368 Ga0500583_0001103
369 Ga0500651_0000019
370 Ga0500651_0000249
371 Ga0500641_0000001
372 Ga0500650_0003921
373 Ga0500555_000005
374 Ga0500569_000004
375 Ga0500593_000001
376 Ga0500594_0000034
377 Ga0500652_000001
378 Ga0500655_004245
379 Ga0500577_0000205
380 Ga0500604_0015221
381 Ga0500616_0000067
382 Ga0500620_001424

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF21530

Pif1_2B_dom

DNA helicase Pif1, 2B domain

274

319

0.94

PF05970

PIF1

PIF1-like helicase

21

222

0.88

PF13401

AAA_22

AAA domain

33

162

0.83

PF13245

AAA_19

AAA domain

25

167

0.78

PF13604

AAA_30

AAA domain

22

230

0.72

Structural Annotation

Top 5 Hits

ID Description Score Start End
6hph-assembly1.cif.gz_A crystal structure of human pif1 helicase in complex with amp-pnp 0.9118 1 409
1tc3-assembly1.cif.gz_C transposase tc3a1-65 from caenorhabditis elegans 0.9076 460 500
6hph-assembly1.cif.gz_A crystal structure of human pif1 helicase in complex with amp-pnp 0.8911 1 409
5fhh-assembly2.cif.gz_B structure of human pif1 helicase domain residues 200-641 0.8713 3 404
5fhh-assembly1.cif.gz_A structure of human pif1 helicase domain residues 200-641 0.8688 3 406
ID Description Score Start End Superfamily
af_A0A1D6PEZ0_779_926_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9336 3 64 3.40.50.300
1u78A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9303 460 499 1.10.10.60
af_P38766_204_429_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9229 1 188 3.40.50.300
af_Q55FJ4_479_706_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9182 1 177 3.40.50.300
af_Q59RQ0_341_571_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9175 3 189 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A1F6BSD2-F1-model_v4 AAA family ATPase 0.9485 1 397 GO:0000723
GO:0003678
GO:0006281
GO:0016887
AF-A0A1F6BSD2-F1-model_v4 AAA family ATPase 0.9462 1 397 GO:0000723
GO:0003678
GO:0006281
GO:0016887
AF-Q55FJ4-F1-model_v4 ATP-dependent DNA helicase (EC 3.6.4.12) 0.937 1 407 GO:0000723
GO:0003689
GO:0005524
GO:0005657
GO:0006260
GO:0006281
GO:0006310
GO:0009378
GO:0016887
GO:0032508
GO:0036121
GO:0043139
GO:0061749
GO:0061775
GO:0140584
GO:0140665
GO:0140849
GO:1990518
AF-A0A0F8DHR2-F1-model_v4 ATP-dependent DNA helicase PIF1 (EC 3.6.4.12) (DNA repair and recombination helicase PIF1) 0.9363 2 403 GO:0000723
GO:0003689
GO:0003723
GO:0005524
GO:0005730
GO:0005739
GO:0006310
GO:0009378
GO:0016887
GO:0033553
GO:0033678
GO:0035861
GO:0036121
GO:0043139
GO:0043504
GO:0044806
GO:0051880
GO:0061749
GO:0061775
GO:0061995
GO:0070336
GO:0140445
GO:0140584
GO:0140665
GO:0140849
GO:1902983
GO:1903469
GO:1990426
GO:1990518
GO:1990814
AF-L2F6T3-F1-model_v4 ATPase AAA 0.9346 1 427 GO:0000723
GO:0003678
GO:0006281
GO:0016887

Map