F293719

General Info

Members Datasets Scaffolds Average Seq Length
191 116 382 327

Family's Representative Sequence

Representative Sequence 3300005545|Ga0070695_100025458|Ga0070695_1000254583
Length 358
Sequence VHRGGQLDQGPSETQRATLDPTPRRPHHPGMDRRRFLVTSLAGAATSLVGGAVSAQPPKTARVAILASSTEANFAPSVKVFRETLQAAGWIEGRNLTLDVRYPGGRYARLPEMAAELVKLKVDVIASMGTPATLAAKQATTTIPIVMESLSDVISTGVVTNLARPGGNITGVAGFAPELSGKRLELIRELFPRADRVAVLTNRANQATTAILRATESAAQQIRMTLHVADVGQPSALGAAFETMRREHADALLLLADPLLFAERDQILQLAARHRLPAIYETRLFPEAGGLLSYGPRPQERFERMAVYVDRILRGARPGDLPIEQPSKFELVINLKTAKTLGLTIPPSLLQRADQVIE

Samples

Sample ID Description Type Environment
1 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
2 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
6 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
7 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
8 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
13 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
14 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
15 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
16 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
17 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
18 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
19 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
22 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
23 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
24 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
25 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
26 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
27 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
28 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
29 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
30 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
31 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
32 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
34 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
37 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
38 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
39 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
40 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
41 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
42 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
43 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
44 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
58 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
59 3300027378 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes) (version 2) Metagenome Rhizosphere
60 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
61 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
62 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
64 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
65 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
66 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
67 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
68 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
69 3300038996 Genetically engineered switchgrass root microbial communities from Knoxville, USA - plot19 Metagenome Rhizosphere
70 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
71 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
72 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
73 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
74 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
75 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
76 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
77 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
78 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
79 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
80 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
81 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
82 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
83 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
84 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
85 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
86 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
87 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
88 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
89 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
90 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
91 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
92 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
93 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
94 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
95 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
96 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
99 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
100 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
101 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
102 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
103 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
104 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
105 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
106 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
107 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
108 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
109 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
110 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
111 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
112 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
113 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
114 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
115 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
116 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 1.57
Rhizoplane 17.8
Rhizosphere 80.63
Stem 0
Stem Tuber 0
Unclassified 6.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070695_100025458 3300005545 Bacteria 3654
2 JGI25404J52841_10000281 3300003659 Bacteria 6552
3 JGI25404J52841_10004326 3300003659 Bacteria 2870
4 Ga0070690_100140157 3300005330 Bacteria 1641
5 Ga0068869_100002423 3300005334 Bacteria 11244
6 Ga0070669_100016380 3300005353 Bacteria 5288
7 Ga0070669_100199389 3300005353 Bacteria 1574
8 Ga0070674_100067942 3300005356 Bacteria 2509
9 Ga0070701_10078155 3300005438 Bacteria 1785
10 Ga0070708_100177547 3300005445 Bacteria 1990
11 Ga0070706_100007801 3300005467 Bacteria 10000
12 Ga0070706_100114222 3300005467 Bacteria 2514
13 Ga0070698_100373836 3300005471 Unclassified 1357
14 Ga0070698_100432216 3300005471 Bacteria 1251
15 Ga0070699_100102343 3300005518 Bacteria 2511
16 Ga0070697_100493840 3300005536 Bacteria 1070
17 Ga0070696_100038441 3300005546 Bacteria 3303
18 Ga0070704_100189795 3300005549 Bacteria 1651
19 Ga0070702_100088317 3300005615 Bacteria 1874
20 Ga0068859_100119065 3300005617 Bacteria 2706
21 Ga0068861_100074301 3300005719 Bacteria 2643
22 Ga0068860_100067261 3300005843 Bacteria 3405
23 Ga0068862_100020294 3300005844 Bacteria 5550
24 Ga0081455_10001495 3300005937 Bacteria 28902
25 Ga0081455_10005761 3300005937 Bacteria 13508
26 Ga0081455_10027407 3300005937 Bacteria 5222
27 Ga0081538_10012461 3300005981 Bacteria 6814
28 Ga0081540_1002587 3300005983 Bacteria 14695
29 Ga0081540_1006003 3300005983 Bacteria 8945
30 Ga0081540_1017487 3300005983 Bacteria 4437
31 Ga0070715_10149749 3300006163 Bacteria 1142
32 Ga0070712_100171704 3300006175 Bacteria 1683
33 Ga0075428_100011220 3300006844 Bacteria 9971
34 Ga0075428_100197464 3300006844 Unclassified 2176
35 Ga0075430_100001152 3300006846 Bacteria 21095
36 Ga0075430_100008382 3300006846 Bacteria 8731
37 Ga0075430_100072365 3300006846 Bacteria 2891
38 Ga0075431_100001213 3300006847 Bacteria 23317
39 Ga0075431_100135737 3300006847 Bacteria 2536
40 Ga0075431_100336287 3300006847 Unclassified 1520
41 Ga0075433_10004125 3300006852 Bacteria 11268
42 Ga0075434_100001551 3300006871 Bacteria 19466
43 Ga0075434_100001596 3300006871 Bacteria 19222
44 Ga0075434_100028083 3300006871 Bacteria 5526
45 Ga0075434_100058326 3300006871 Bacteria 3837
46 Ga0075429_100020283 3300006880 Bacteria 5765
47 Ga0075429_100031104 3300006880 Bacteria 4640
48 Ga0075429_100084666 3300006880 Bacteria 2763
49 Ga0075436_100001958 3300006914 Bacteria 14199
50 Ga0075436_100003943 3300006914 Bacteria 10172
51 Ga0075436_100033691 3300006914 Bacteria 3531
52 Ga0097620_100119069 3300006931 Bacteria 2706
53 Ga0075435_100002610 3300007076 Bacteria 12025
54 Ga0075435_100007971 3300007076 Bacteria 7581
55 Ga0075435_100143792 3300007076 Bacteria 2002
56 Ga0111539_10008247 3300009094 Bacteria 13260
57 Ga0111539_10078124 3300009094 Bacteria 3895
58 Ga0111539_10103637 3300009094 Bacteria 3339
59 Ga0111539_10215346 3300009094 Bacteria 2237
60 Ga0114129_10069521 3300009147 Bacteria 4908
61 Ga0114129_10748402 3300009147 Bacteria 1251
62 Ga0105243_10192527 3300009148 Bacteria 1782
63 Ga0105241_10079629 3300009174 Bacteria 2562
64 Ga0105248_10027298 3300009177 Bacteria 6354
65 Ga0105238_10384698 3300009551 Bacteria 1395
66 Ga0105249_10072767 3300009553 Bacteria 3178
67 Ga0163162_10100864 3300013306 Unclassified 2978
68 Ga0163163_10296923 3300014325 Bacteria 1668
69 Ga0157380_10380393 3300014326 Bacteria 1332
70 Ga0207684_10005841 3300025910 Bacteria 11270
71 Ga0207684_10064082 3300025910 Bacteria 3120
72 Ga0207684_10091887 3300025910 Bacteria 2587
73 Ga0207684_10193703 3300025910 Bacteria 1753
74 Ga0207654_10020692 3300025911 Bacteria 3492
75 Ga0207707_10372423 3300025912 Bacteria 1229
76 Ga0207693_10040894 3300025915 Bacteria 3652
77 Ga0207662_10176026 3300025918 Bacteria 1375
78 Ga0207690_10368965 3300025932 Bacteria 1138
79 Ga0207709_10005751 3300025935 Bacteria 7004
80 Ga0207669_10074596 3300025937 Bacteria 2146
81 Ga0207711_10010024 3300025941 Bacteria 7874
82 Ga0207689_10001241 3300025942 Bacteria 24582
83 Ga0207689_10074636 3300025942 Bacteria 2786
84 Ga0207712_10055522 3300025961 Bacteria 2787
85 Ga0207708_10071523 3300026075 Bacteria 2657
86 Ga0207702_10099056 3300026078 Bacteria 2569
87 Ga0209389_1004826 3300027296 Bacteria 11341
88 Ga0209489_107097 3300027361 Bacteria 17140
89 Ga0209489_108748 3300027361 Bacteria 13415
90 Ga0209981_1002433 3300027378 Bacteria 2372
91 Ga0209971_1007913 3300027682 Bacteria 2522
92 Ga0207428_10050463 3300027907 Bacteria 3329
93 Ga0268264_10055466 3300028381 Bacteria 3311
94 Ga0268264_10174496 3300028381 Bacteria 1947
95 Ga0268264_10494303 3300028381 Bacteria 1192
96 Ga0373940_0010478 3300035088 Bacteria 2180
97 Ga0373960_0008567 3300035121 Bacteria 2454
98 Ga0373943_0075787 3300035170 Bacteria 1714
99 Ga0373961_0003808 3300035241 Bacteria 3688
100 Ga0373931_0004436 3300035691 Bacteria 6410
101 Ga0373935_0117737 3300035692 Bacteria 1771
102 Ga0242420_019672 3300038996 Bacteria 1197
103 Ga0450923_046859 3300042125 Bacteria 921
104 Ga0439464_0052622 3300042439 Bacteria 1180
105 Ga0495629_0274791 3300046459 Bacteria 1157
106 Ga0495580_0017419 3300046472 Bacteria 5375
107 Ga0495642_0022259 3300046528 Bacteria 2496
108 Ga0495656_0008479 3300046615 Bacteria 3671
109 Ga0495658_0066474 3300046683 Bacteria 2082
110 Ga0495658_0082649 3300046683 Bacteria 1887
111 Ga0495613_0198357 3300046689 Bacteria 1416
112 Ga0495624_0044840 3300046690 Bacteria 2818
113 Ga0495676_0075336 3300047321 Bacteria 2581
114 Ga0495683_0112848 3300047323 Bacteria 1296
115 Ga0496100_0083364 3300048903 Bacteria 2164
116 Ga0496101_0053541 3300048904 Bacteria 2912
117 Ga0496102_0055823 3300048905 Bacteria 3602
118 Ga0496102_0093261 3300048905 Bacteria 2789
119 Ga0496102_0106202 3300048905 Bacteria 2613
120 Ga0496102_0172842 3300048905 Bacteria 2034
121 Ga0496104_0040311 3300048907 Bacteria 4377
122 Ga0496104_0081369 3300048907 Bacteria 3089
123 Ga0496104_0125800 3300048907 Bacteria 2461
124 Ga0496104_0493098 3300048907 Bacteria 1136
125 Ga0496105_0032730 3300048908 Bacteria 4268
126 Ga0496105_0061848 3300048908 Bacteria 3090
127 Ga0496105_0104889 3300048908 Bacteria 2333
128 Ga0496106_0122927 3300048909 Bacteria 2030
129 Ga0496107_0131302 3300048910 Bacteria 1849
130 Ga0496107_0210050 3300048910 Bacteria 1447
131 Ga0496108_0105829 3300048911 Bacteria 2402
132 Ga0496108_0348475 3300048911 Bacteria 1292
133 Ga0496108_0392849 3300048911 Bacteria 1211
134 Ga0496109_0048107 3300048912 Unclassified 3880
135 Ga0496109_0109960 3300048912 Bacteria 2562
136 Ga0496109_0155329 3300048912 Bacteria 2143
137 Ga0496109_0279704 3300048912 Bacteria 1573
138 Ga0496109_0376290 3300048912 Bacteria 1341
139 Ga0496110_0055402 3300048913 Unclassified 3489
140 Ga0496111_0122899 3300048914 Bacteria 1918
141 Ga0496112_0069154 3300048915 Bacteria 3488
142 Ga0496112_0236396 3300048915 Bacteria 1781
143 Ga0496112_0425559 3300048915 Bacteria 1266
144 Ga0496113_0152631 3300048916 Bacteria 1823
145 Ga0496114_0085612 3300048917 Bacteria 2670
146 Ga0496115_0046260 3300048918 Bacteria 3477
147 Ga0496115_0091662 3300048918 Bacteria 2484
148 Ga0496115_0243941 3300048918 Bacteria 1480
149 Ga0501041_0187728 3300049577 Unclassified 1294
150 Ga0501042_0235099 3300049578 Bacteria 1322
151 Ga0501068_0065513 3300049584 Unclassified 2212
152 Ga0501069_0151306 3300049585 Bacteria 1334
153 Ga0501072_0115610 3300049588 Unclassified 2136
154 Ga0501074_0120699 3300049590 Unclassified 1875
155 Ga0501076_0092870 3300049592 Bacteria 2428
156 Ga0501076_0232425 3300049592 Bacteria 1507
157 Ga0501079_0023873 3300049741 Bacteria 4691
158 Ga0501081_0031779 3300049743 Bacteria 3578
159 nmdc:mga05p37_169970_c1 3300050507 Bacteria 2659
160 nmdc:mga05p37_234284_c1 3300050507 Bacteria 2211
161 nmdc:mga05p37_746841_c1 3300050507 Unclassified 1079
162 nmdc:mga05p37_8307_c1 3300050507 Bacteria 12275
163 nmdc:mga09592_31592_c1 3300050508 Bacteria 4412
164 nmdc:mga09592_491690_c1 3300050508 Bacteria 1057
165 nmdc:mga09592_6426_c1 3300050508 Bacteria 9579
166 nmdc:mga0qj67_15266_c1 3300050509 Bacteria 5815
167 nmdc:mga0qj67_166160_c1 3300050509 Bacteria 1792
168 nmdc:mga06r32_12429_c1 3300050510 Bacteria 7683
169 nmdc:mga06r32_4175_c1 3300050510 Bacteria 12939
170 nmdc:mga06r32_97971_c1 3300050510 Bacteria 2874
171 nmdc:mga08y16_184134_c1 3300050511 Bacteria 2168
172 nmdc:mga08y16_26029_c1 3300050511 Bacteria 6171
173 nmdc:mga0n895_10890_c1 3300050512 Bacteria 8077
174 nmdc:mga0n895_11007_c1 3300050512 Bacteria 8040
175 nmdc:mga0n895_156868_c1 3300050512 Bacteria 2307
176 nmdc:mga0n895_26_c1 3300050512 Bacteria 89958
177 nmdc:mga0rr50_10375_c1 3300050513 Bacteria 5908
178 nmdc:mga0rr50_116659_c1 3300050513 Bacteria 2120
179 nmdc:mga0rr50_189_c1 3300050513 Bacteria 33360
180 nmdc:mga0rr50_2605_c1 3300050513 Bacteria 10225
181 nmdc:mga0rr50_3019_c1 3300050513 Bacteria 9623
182 nmdc:mga08x19_1647_c1 3300050514 Bacteria 13801
183 nmdc:mga08x19_6051_c1 3300050514 Bacteria 7148
184 nmdc:mga0a205_1070_c1 3300050515 Bacteria 22744
185 nmdc:mga0a205_24669_c1 3300050515 Bacteria 5722
186 nmdc:mga0a205_833_c1 3300050515 Bacteria 25152
187 nmdc:mga0a205_84293_c1 3300050515 Bacteria 3070
188 Ga0495619_0042318 3300053085 Bacteria 2982
189 Ga0501084_0224466 3300054114 Unclassified 1585
190 Ga0530510_0027764 3300061734 Bacteria 4055
191 Ga0530510_0067988 3300061734 Unclassified 2585
192 Ga0070695_100025458
193 JGI25404J52841_10000281
194 JGI25404J52841_10004326
195 Ga0070690_100140157
196 Ga0068869_100002423
197 Ga0070669_100016380
198 Ga0070669_100199389
199 Ga0070674_100067942
200 Ga0070701_10078155
201 Ga0070708_100177547
202 Ga0070706_100007801
203 Ga0070706_100114222
204 Ga0070698_100373836
205 Ga0070698_100432216
206 Ga0070699_100102343
207 Ga0070697_100493840
208 Ga0070696_100038441
209 Ga0070704_100189795
210 Ga0070702_100088317
211 Ga0068859_100119065
212 Ga0068861_100074301
213 Ga0068860_100067261
214 Ga0068862_100020294
215 Ga0081455_10001495
216 Ga0081455_10005761
217 Ga0081455_10027407
218 Ga0081538_10012461
219 Ga0081540_1002587
220 Ga0081540_1006003
221 Ga0081540_1017487
222 Ga0070715_10149749
223 Ga0070712_100171704
224 Ga0075428_100011220
225 Ga0075428_100197464
226 Ga0075430_100001152
227 Ga0075430_100008382
228 Ga0075430_100072365
229 Ga0075431_100001213
230 Ga0075431_100135737
231 Ga0075431_100336287
232 Ga0075433_10004125
233 Ga0075434_100001551
234 Ga0075434_100001596
235 Ga0075434_100028083
236 Ga0075434_100058326
237 Ga0075429_100020283
238 Ga0075429_100031104
239 Ga0075429_100084666
240 Ga0075436_100001958
241 Ga0075436_100003943
242 Ga0075436_100033691
243 Ga0097620_100119069
244 Ga0075435_100002610
245 Ga0075435_100007971
246 Ga0075435_100143792
247 Ga0111539_10008247
248 Ga0111539_10078124
249 Ga0111539_10103637
250 Ga0111539_10215346
251 Ga0114129_10069521
252 Ga0114129_10748402
253 Ga0105243_10192527
254 Ga0105241_10079629
255 Ga0105248_10027298
256 Ga0105238_10384698
257 Ga0105249_10072767
258 Ga0163162_10100864
259 Ga0163163_10296923
260 Ga0157380_10380393
261 Ga0207684_10005841
262 Ga0207684_10064082
263 Ga0207684_10091887
264 Ga0207684_10193703
265 Ga0207654_10020692
266 Ga0207707_10372423
267 Ga0207693_10040894
268 Ga0207662_10176026
269 Ga0207690_10368965
270 Ga0207709_10005751
271 Ga0207669_10074596
272 Ga0207711_10010024
273 Ga0207689_10001241
274 Ga0207689_10074636
275 Ga0207712_10055522
276 Ga0207708_10071523
277 Ga0207702_10099056
278 Ga0209389_1004826
279 Ga0209489_107097
280 Ga0209489_108748
281 Ga0209981_1002433
282 Ga0209971_1007913
283 Ga0207428_10050463
284 Ga0268264_10055466
285 Ga0268264_10174496
286 Ga0268264_10494303
287 Ga0373940_0010478
288 Ga0373960_0008567
289 Ga0373943_0075787
290 Ga0373961_0003808
291 Ga0373931_0004436
292 Ga0373935_0117737
293 Ga0242420_019672
294 Ga0450923_046859
295 Ga0439464_0052622
296 Ga0495629_0274791
297 Ga0495580_0017419
298 Ga0495642_0022259
299 Ga0495656_0008479
300 Ga0495658_0066474
301 Ga0495658_0082649
302 Ga0495613_0198357
303 Ga0495624_0044840
304 Ga0495676_0075336
305 Ga0495683_0112848
306 Ga0496100_0083364
307 Ga0496101_0053541
308 Ga0496102_0055823
309 Ga0496102_0093261
310 Ga0496102_0106202
311 Ga0496102_0172842
312 Ga0496104_0040311
313 Ga0496104_0081369
314 Ga0496104_0125800
315 Ga0496104_0493098
316 Ga0496105_0032730
317 Ga0496105_0061848
318 Ga0496105_0104889
319 Ga0496106_0122927
320 Ga0496107_0131302
321 Ga0496107_0210050
322 Ga0496108_0105829
323 Ga0496108_0348475
324 Ga0496108_0392849
325 Ga0496109_0048107
326 Ga0496109_0109960
327 Ga0496109_0155329
328 Ga0496109_0279704
329 Ga0496109_0376290
330 Ga0496110_0055402
331 Ga0496111_0122899
332 Ga0496112_0069154
333 Ga0496112_0236396
334 Ga0496112_0425559
335 Ga0496113_0152631
336 Ga0496114_0085612
337 Ga0496115_0046260
338 Ga0496115_0091662
339 Ga0496115_0243941
340 Ga0501041_0187728
341 Ga0501042_0235099
342 Ga0501068_0065513
343 Ga0501069_0151306
344 Ga0501072_0115610
345 Ga0501074_0120699
346 Ga0501076_0092870
347 Ga0501076_0232425
348 Ga0501079_0023873
349 Ga0501081_0031779
350 nmdc:mga05p37_169970_c1
351 nmdc:mga05p37_234284_c1
352 nmdc:mga05p37_746841_c1
353 nmdc:mga05p37_8307_c1
354 nmdc:mga09592_31592_c1
355 nmdc:mga09592_491690_c1
356 nmdc:mga09592_6426_c1
357 nmdc:mga0qj67_15266_c1
358 nmdc:mga0qj67_166160_c1
359 nmdc:mga06r32_12429_c1
360 nmdc:mga06r32_4175_c1
361 nmdc:mga06r32_97971_c1
362 nmdc:mga08y16_184134_c1
363 nmdc:mga08y16_26029_c1
364 nmdc:mga0n895_10890_c1
365 nmdc:mga0n895_11007_c1
366 nmdc:mga0n895_156868_c1
367 nmdc:mga0n895_26_c1
368 nmdc:mga0rr50_10375_c1
369 nmdc:mga0rr50_116659_c1
370 nmdc:mga0rr50_189_c1
371 nmdc:mga0rr50_2605_c1
372 nmdc:mga0rr50_3019_c1
373 nmdc:mga08x19_1647_c1
374 nmdc:mga08x19_6051_c1
375 nmdc:mga0a205_1070_c1
376 nmdc:mga0a205_24669_c1
377 nmdc:mga0a205_833_c1
378 nmdc:mga0a205_84293_c1
379 Ga0495619_0042318
380 Ga0501084_0224466
381 Ga0530510_0027764
382 Ga0530510_0067988

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04392

ABC_sub_bind

ABC transporter substrate binding protein

62

357

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
3lft-assembly1.cif.gz_A the crystal structure of the abc domain in complex with l-trp from streptococcus pneumonia to 1.35a 0.9362 38 335
3lft-assembly2.cif.gz_B the crystal structure of the abc domain in complex with l-trp from streptococcus pneumonia to 1.35a 0.9352 40 335
3lft-assembly2.cif.gz_B the crystal structure of the abc domain in complex with l-trp from streptococcus pneumonia to 1.35a 0.929 40 335
3lft-assembly1.cif.gz_A the crystal structure of the abc domain in complex with l-trp from streptococcus pneumonia to 1.35a 0.9271 38 335
3lkv-assembly1.cif.gz_A-2 crystal structure of conserved domain protein from vibrio cholerae o1 biovar eltor str. n16961 0.9266 36 334
ID Description Score Start End Superfamily
3lftA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.909 158 335 3.40.50.2300
3lkvA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.8989 158 334 3.40.50.2300
3lftA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.8912 158 335 3.40.50.2300
3lkvA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.8756 158 334 3.40.50.2300
3lftB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.8735 40 306 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A2V6ZIS3-F1-model_v4 ABC transporter substrate-binding protein 0.9935 232 336
AF-A0A2V7D4C4-F1-model_v4 ABC transporter substrate-binding protein 0.9818 240 336
AF-A0A7V9HTZ8-F1-model_v4 ABC transporter substrate-binding protein 0.9808 230 336
AF-A0A536TI46-F1-model_v4 ABC transporter substrate-binding protein 0.9806 63 336 GO:0016020
AF-A0A2V7I331-F1-model_v4 ABC transporter substrate-binding protein 0.9801 226 336

Map