F292981

General Info

Members Datasets Scaffolds Average Seq Length
190 149 380 259

Family's Representative Sequence

Representative Sequence 3300046472|Ga0495580_0114754|Ga0495580_0114754_540_1403
Length 287
Sequence MMGPEPKQRRVGGASAPILAIERITKRYGALTALEDVSLTVNRGEVVCLIGPSGSGKSTLLRCANALETLEGGRILFEGREVHASDPKSARAVRQRMGMVFQNFELFPHLTVLRNVSIGPATVLRLDRVAAERRARALLAKVGLSDKASAHPAALSGGQQQRVAIARALAMEPALMLFDEPTSALDPETVGEVLTVMKALADEGMTMVVVTHEMDFARRVGDWVVVFDKGRVIEEGPPKQIFETTIVARTREFLSHLGWHGESTLDKAASSSPEAAQQPIDKEDVDR

Samples

Sample ID Description Type Environment
1 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
2 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
3 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
4 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
5 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
6 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
10 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
13 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
16 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
17 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
18 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
19 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
20 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
21 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
22 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
23 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
24 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
25 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
26 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
27 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
28 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
29 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
30 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
33 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
34 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
35 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
36 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
37 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
38 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
39 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
53 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
54 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
55 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
56 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
57 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
58 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
59 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
60 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
61 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
62 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
63 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
64 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
65 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
66 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
67 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
68 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
69 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
70 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
71 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
72 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
73 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
74 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
75 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
76 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
77 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
78 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
79 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
80 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
81 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
82 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
83 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
84 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
85 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
86 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
87 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
88 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
89 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
90 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
91 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
92 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
93 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
94 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
95 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
96 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
97 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
98 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
107 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
111 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
112 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
113 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
114 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
115 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
116 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
117 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
118 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
119 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
120 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
121 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
123 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
124 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
125 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
126 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
127 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
128 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
129 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
130 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
131 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
132 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
133 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
134 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
135 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
136 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
137 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
138 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
139 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
140 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
141 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
142 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
143 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
144 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
145 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
146 2767802442 Phyllobacterium brassicacearum 29-15 Isolate Rhizoplane
147 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
148 2841911363 Bosea caraganae RCAM04685 Isolate Nodule
149 2841917233 Bosea caraganae RCAM04680 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 97.89
Metatranscriptomes 0
Isolates 2.11

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.21
Nodule 1.05
Rhizoplane 3.16
Rhizosphere 71.58
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495580_0114754 3300046472 Bacteria 1871
2 JGI25159J45721_1002545 3300002987 Bacteria 6862
3 JGI25160J50197_1004251 3300003354 Bacteria 6216
4 JGI25161J50226_1001723 3300003374 Bacteria 6211
5 Ga0055543_1002319 3300004625 Bacteria 6384
6 Ga0065165_1006190 3300005262 Bacteria 6384
7 Ga0070671_100025462 3300005355 Bacteria 4855
8 Ga0070714_100016803 3300005435 Bacteria 5918
9 Ga0070713_100037068 3300005436 Bacteria 3940
10 Ga0070708_100099797 3300005445 Bacteria 2657
11 Ga0070708_100236361 3300005445 Bacteria 1715
12 Ga0070708_100356321 3300005445 Bacteria 1379
13 Ga0070708_100741812 3300005445 Bacteria 923
14 Ga0070681_10319717 3300005458 Bacteria 1462
15 Ga0070706_100018128 3300005467 Bacteria 6494
16 Ga0070707_100029343 3300005468 Bacteria 5237
17 Ga0070707_100031830 3300005468 Bacteria 5025
18 Ga0070707_100046390 3300005468 Bacteria 4158
19 Ga0070698_100127191 3300005471 Bacteria 2505
20 Ga0070698_100604720 3300005471 Bacteria 1037
21 Ga0070699_100013545 3300005518 Bacteria 7020
22 Ga0070699_100263422 3300005518 Bacteria 1542
23 Ga0070697_100018433 3300005536 Bacteria 5501
24 Ga0068858_100554446 3300005842 Bacteria 1113
25 Ga0081455_10032140 3300005937 Bacteria 4735
26 Ga0070717_10038068 3300006028 Bacteria 3908
27 Ga0075368_10179596 3300006042 Bacteria 892
28 Ga0070716_100012365 3300006173 Bacteria 4325
29 Ga0070716_100405004 3300006173 Bacteria 982
30 Ga0075367_10028974 3300006178 Bacteria 3163
31 Ga0075366_10081232 3300006195 Bacteria 1936
32 Ga0075370_10016809 3300006353 Bacteria 3942
33 Ga0075428_100009152 3300006844 Bacteria 10991
34 Ga0075430_100115356 3300006846 Bacteria 2238
35 Ga0075431_100010882 3300006847 Bacteria 9152
36 Ga0075431_100570119 3300006847 Bacteria 1118
37 Ga0075431_100613869 3300006847 Bacteria 1070
38 Ga0075434_100353730 3300006871 Bacteria 1490
39 Ga0075436_100184897 3300006914 Bacteria 1473
40 Ga0111539_10207086 3300009094 Bacteria 2286
41 Ga0114129_10517279 3300009147 Bacteria 1556
42 Ga0105237_10150429 3300009545 Bacteria 2324
43 Ga0157370_10324768 3300013104 Bacteria 1419
44 Ga0213873_10001584 3300021358 Bacteria 3796
45 Ga0213874_10002550 3300021377 Bacteria 3931
46 Ga0213876_10003548 3300021384 Bacteria 8892
47 Ga0213876_10004250 3300021384 Bacteria 8030
48 Ga0209130_1003561 3300025284 Bacteria 6516
49 Ga0207426_1000076 3300025302 Bacteria 320851
50 Ga0209257_1017565 3300025304 Bacteria 2808
51 Ga0207680_10052629 3300025903 Bacteria 2441
52 Ga0207684_10000972 3300025910 Bacteria 32086
53 Ga0207684_10004791 3300025910 Bacteria 12673
54 Ga0207671_10151732 3300025914 Bacteria 1790
55 Ga0207646_10011235 3300025922 Bacteria 8695
56 Ga0207646_10012608 3300025922 Bacteria 8115
57 Ga0207646_10025565 3300025922 Bacteria 5400
58 Ga0207646_10241888 3300025922 Bacteria 1630
59 Ga0207681_10405592 3300025923 Bacteria 1102
60 Ga0207700_10001483 3300025928 Bacteria 13281
61 Ga0207664_10053421 3300025929 Bacteria 3198
62 Ga0207644_10140825 3300025931 Bacteria 1857
63 Ga0207665_10253353 3300025939 Bacteria 1302
64 Ga0207703_10279814 3300026035 Bacteria 1515
65 Ga0209371_1009416 3300027312 Bacteria 3108
66 Ga0268264_10087228 3300028381 Bacteria 2683
67 Ga0307515_10156065 3300028794 Bacteria 2355
68 Ga0268256_1009978 3300030500 Bacteria 3108
69 Ga0307509_10339114 3300031507 Bacteria 1231
70 Ga0307516_10083461 3300031730 Bacteria 3036
71 Ga0307405_10416259 3300031731 Bacteria 1056
72 Ga0307416_100331280 3300032002 Bacteria 1530
73 Ga0307411_10055292 3300032005 Bacteria 2611
74 Ga0307510_10050330 3300033180 Bacteria 4421
75 Ga0373931_0320265 3300035691 Bacteria 963
76 Ga0373935_0078110 3300035692 Bacteria 2147
77 Ga0373935_0092605 3300035692 Bacteria 1981
78 Ga0373933_0057157 3300035724 Bacteria 2344
79 Ga0373925_0068479 3300037068 Bacteria 2679
80 Ga0373925_0157650 3300037068 Bacteria 1786
81 Ga0395905_0450290 3300037471 Bacteria 1185
82 Ga0436364_0755596 3300037853 Bacteria 1052
83 Ga0436364_0827113 3300037853 Bacteria 1066
84 Ga0395901_0323575 3300038443 Bacteria 1595
85 Ga0436365_0284346 3300039437 Bacteria 2427
86 Ga0436365_0507521 3300039437 Bacteria 13106
87 Ga0436365_0553876 3300039437 Bacteria 2338
88 Ga0436360_1331810 3300039438 Bacteria 1120
89 Ga0436361_0369983 3300039447 Bacteria 3331
90 Ga0436361_0505856 3300039447 Bacteria 3124
91 Ga0436361_0773862 3300039447 Bacteria 2277
92 Ga0436363_0040025 3300039450 Bacteria 12632
93 Ga0436363_0397425 3300039450 Bacteria 5980
94 Ga0436363_1619531 3300039450 Bacteria 29864
95 Ga0436362_0017577 3300039453 Bacteria 16128
96 Ga0451793_0002907 3300041452 Bacteria 1013
97 Ga0466959_0024404 3300045049 Bacteria 4479
98 Ga0495590_0062705 3300046457 Bacteria 1301
99 Ga0495638_0059645 3300046460 Bacteria 2362
100 Ga0495651_0031984 3300046462 Bacteria 4104
101 Ga0495616_0059701 3300046513 Bacteria 1875
102 Ga0495632_0080873 3300046519 Bacteria 1549
103 Ga0495666_0077500 3300046526 Bacteria 1575
104 Ga0495587_0267752 3300046536 Bacteria 959
105 Ga0495625_0001757 3300046660 Bacteria 25057
106 Ga0495625_0044628 3300046660 Bacteria 3208
107 Ga0495625_0104581 3300046660 Bacteria 1941
108 Ga0495635_0118000 3300046663 Bacteria 1811
109 Ga0495623_0073257 3300046679 Bacteria 2129
110 Ga0495624_0195073 3300046690 Bacteria 1231
111 Ga0495649_0002553 3300046694 Bacteria 12758
112 Ga0495660_0169979 3300046810 Bacteria 1062
113 Ga0495674_0300636 3300047319 Bacteria 1311
114 Ga0495676_0211321 3300047321 Bacteria 1342
115 Ga0495673_0105586 3300047469 Bacteria 1133
116 Ga0495686_0000855 3300047472 Bacteria 39059
117 Ga0495593_0061336 3300047673 Bacteria 1967
118 Ga0496110_0017282 3300048913 Bacteria 6034
119 Ga0496114_0156535 3300048917 Bacteria 1979
120 Ga0496114_0375126 3300048917 Bacteria 1259
121 Ga0496115_0051529 3300048918 Bacteria 3300
122 Ga0496119_0068435 3300048922 Bacteria 2090
123 Ga0496126_0141028 3300048929 Bacteria 2074
124 Ga0496126_0212644 3300048929 Bacteria 1627
125 Ga0495682_0034033 3300049460 Bacteria 1880
126 Ga0501032_0188870 3300049569 Bacteria 1347
127 Ga0501033_0074950 3300049570 Bacteria 2484
128 Ga0501033_0120824 3300049570 Bacteria 1901
129 Ga0501034_0349701 3300049571 Bacteria 1407
130 Ga0501034_0761726 3300049571 Bacteria 863
131 Ga0501036_0018155 3300049572 Bacteria 5891
132 Ga0501036_0260960 3300049572 Bacteria 1451
133 Ga0501037_0109724 3300049573 Bacteria 1988
134 Ga0501038_0115740 3300049574 Bacteria 2216
135 Ga0501039_0090500 3300049575 Bacteria 2384
136 Ga0501040_0007875 3300049576 Bacteria 6905
137 Ga0501042_0017160 3300049578 Bacteria 4988
138 Ga0501043_0151525 3300049579 Bacteria 1815
139 Ga0501043_0269878 3300049579 Bacteria 1306
140 Ga0501043_0314861 3300049579 Bacteria 1194
141 Ga0501046_0075776 3300049580 Bacteria 2607
142 Ga0501047_0027362 3300049581 Bacteria 5493
143 Ga0501047_0122249 3300049581 Bacteria 2485
144 Ga0501047_0215039 3300049581 Bacteria 1779
145 Ga0501048_0013122 3300049582 Bacteria 6150
146 Ga0501070_0540039 3300049586 Bacteria 934
147 Ga0501071_0040433 3300049587 Bacteria 3336
148 Ga0501072_0025950 3300049588 Bacteria 4565
149 Ga0501075_0030680 3300049591 Bacteria 3983
150 Ga0501076_0030740 3300049592 Bacteria 4184
151 Ga0501077_0070301 3300049593 Bacteria 2218
152 Ga0501079_0045737 3300049741 Bacteria 3378
153 Ga0501080_0108277 3300049742 Bacteria 2576
154 Ga0501081_0019588 3300049743 Bacteria 4506
155 Ga0501083_0051788 3300049744 Bacteria 2760
156 Ga0501035_0062209 3300049822 Bacteria 3322
157 Ga0501035_0117883 3300049822 Bacteria 2323
158 Ga0501044_0263914 3300049823 Bacteria 1660
159 Ga0501045_0010778 3300049824 Bacteria 6406
160 nmdc:mga03n38_23900_c1 3300050490 Bacteria 2492
161 nmdc:mga0k408_21666_c1 3300050493 Bacteria 3612
162 nmdc:mga0k408_37220_c1 3300050493 Bacteria 2793
163 nmdc:mga06z11_2227_c1 3300050494 Bacteria 7375
164 nmdc:mga06z11_267957_c1 3300050494 Bacteria 1009
165 nmdc:mga07m45_9406_c1 3300050496 Bacteria 5069
166 nmdc:mga05p37_113142_c1 3300050507 Bacteria 3337
167 nmdc:mga0qj67_141784_c1 3300050509 Bacteria 1949
168 nmdc:mga06r32_43587_c1 3300050510 Bacteria 4269
169 nmdc:mga06r32_512849_c1 3300050510 Bacteria 1175
170 nmdc:mga08y16_318980_c1 3300050511 Bacteria 1600
171 nmdc:mga0n895_668962_c1 3300050512 Bacteria 1036
172 nmdc:mga0n895_83963_c1 3300050512 Bacteria 3177
173 nmdc:mga0a205_290475_c1 3300050515 Bacteria 1509
174 Ga0500578_0025790 3300053086 Bacteria 3770
175 Ga0500651_0076426 3300053093 Bacteria 2079
176 Ga0500594_0003238 3300053118 Bacteria 3566
177 Ga0500642_0009522 3300053130 Bacteria 3376
178 Ga0500559_0000326 3300053136 Bacteria 35945
179 Ga0500568_0074908 3300053139 Bacteria 1291
180 Ga0500622_0004224 3300053156 Bacteria 9145
181 Ga0500636_0085747 3300053177 Bacteria 1809
182 Ga0500645_006086 3300053730 Bacteria 4350
183 Ga0501084_0089916 3300054114 Bacteria 2577
184 Ga0501084_0694733 3300054114 Bacteria 858
185 Ga0501082_0028334 3300060353 Bacteria 4826
186 Ga0530510_0035304 3300061734 Bacteria 3603
187 2770199463 2767802442 Bacteria 5747986
188 2819683561 2818991461 Bacteria 7026071
189 2841916639 2841911363 Bacteria 6173697
190 2841922536 2841917233 Bacteria 6173500
191 Ga0495580_0114754
192 JGI25159J45721_1002545
193 JGI25160J50197_1004251
194 JGI25161J50226_1001723
195 Ga0055543_1002319
196 Ga0065165_1006190
197 Ga0070671_100025462
198 Ga0070714_100016803
199 Ga0070713_100037068
200 Ga0070708_100099797
201 Ga0070708_100236361
202 Ga0070708_100356321
203 Ga0070708_100741812
204 Ga0070681_10319717
205 Ga0070706_100018128
206 Ga0070707_100029343
207 Ga0070707_100031830
208 Ga0070707_100046390
209 Ga0070698_100127191
210 Ga0070698_100604720
211 Ga0070699_100013545
212 Ga0070699_100263422
213 Ga0070697_100018433
214 Ga0068858_100554446
215 Ga0081455_10032140
216 Ga0070717_10038068
217 Ga0075368_10179596
218 Ga0070716_100012365
219 Ga0070716_100405004
220 Ga0075367_10028974
221 Ga0075366_10081232
222 Ga0075370_10016809
223 Ga0075428_100009152
224 Ga0075430_100115356
225 Ga0075431_100010882
226 Ga0075431_100570119
227 Ga0075431_100613869
228 Ga0075434_100353730
229 Ga0075436_100184897
230 Ga0111539_10207086
231 Ga0114129_10517279
232 Ga0105237_10150429
233 Ga0157370_10324768
234 Ga0213873_10001584
235 Ga0213874_10002550
236 Ga0213876_10003548
237 Ga0213876_10004250
238 Ga0209130_1003561
239 Ga0207426_1000076
240 Ga0209257_1017565
241 Ga0207680_10052629
242 Ga0207684_10000972
243 Ga0207684_10004791
244 Ga0207671_10151732
245 Ga0207646_10011235
246 Ga0207646_10012608
247 Ga0207646_10025565
248 Ga0207646_10241888
249 Ga0207681_10405592
250 Ga0207700_10001483
251 Ga0207664_10053421
252 Ga0207644_10140825
253 Ga0207665_10253353
254 Ga0207703_10279814
255 Ga0209371_1009416
256 Ga0268264_10087228
257 Ga0307515_10156065
258 Ga0268256_1009978
259 Ga0307509_10339114
260 Ga0307516_10083461
261 Ga0307405_10416259
262 Ga0307416_100331280
263 Ga0307411_10055292
264 Ga0307510_10050330
265 Ga0373931_0320265
266 Ga0373935_0078110
267 Ga0373935_0092605
268 Ga0373933_0057157
269 Ga0373925_0068479
270 Ga0373925_0157650
271 Ga0395905_0450290
272 Ga0436364_0755596
273 Ga0436364_0827113
274 Ga0395901_0323575
275 Ga0436365_0284346
276 Ga0436365_0507521
277 Ga0436365_0553876
278 Ga0436360_1331810
279 Ga0436361_0369983
280 Ga0436361_0505856
281 Ga0436361_0773862
282 Ga0436363_0040025
283 Ga0436363_0397425
284 Ga0436363_1619531
285 Ga0436362_0017577
286 Ga0451793_0002907
287 Ga0466959_0024404
288 Ga0495590_0062705
289 Ga0495638_0059645
290 Ga0495651_0031984
291 Ga0495616_0059701
292 Ga0495632_0080873
293 Ga0495666_0077500
294 Ga0495587_0267752
295 Ga0495625_0001757
296 Ga0495625_0044628
297 Ga0495625_0104581
298 Ga0495635_0118000
299 Ga0495623_0073257
300 Ga0495624_0195073
301 Ga0495649_0002553
302 Ga0495660_0169979
303 Ga0495674_0300636
304 Ga0495676_0211321
305 Ga0495673_0105586
306 Ga0495686_0000855
307 Ga0495593_0061336
308 Ga0496110_0017282
309 Ga0496114_0156535
310 Ga0496114_0375126
311 Ga0496115_0051529
312 Ga0496119_0068435
313 Ga0496126_0141028
314 Ga0496126_0212644
315 Ga0495682_0034033
316 Ga0501032_0188870
317 Ga0501033_0074950
318 Ga0501033_0120824
319 Ga0501034_0349701
320 Ga0501034_0761726
321 Ga0501036_0018155
322 Ga0501036_0260960
323 Ga0501037_0109724
324 Ga0501038_0115740
325 Ga0501039_0090500
326 Ga0501040_0007875
327 Ga0501042_0017160
328 Ga0501043_0151525
329 Ga0501043_0269878
330 Ga0501043_0314861
331 Ga0501046_0075776
332 Ga0501047_0027362
333 Ga0501047_0122249
334 Ga0501047_0215039
335 Ga0501048_0013122
336 Ga0501070_0540039
337 Ga0501071_0040433
338 Ga0501072_0025950
339 Ga0501075_0030680
340 Ga0501076_0030740
341 Ga0501077_0070301
342 Ga0501079_0045737
343 Ga0501080_0108277
344 Ga0501081_0019588
345 Ga0501083_0051788
346 Ga0501035_0062209
347 Ga0501035_0117883
348 Ga0501044_0263914
349 Ga0501045_0010778
350 nmdc:mga03n38_23900_c1
351 nmdc:mga0k408_21666_c1
352 nmdc:mga0k408_37220_c1
353 nmdc:mga06z11_2227_c1
354 nmdc:mga06z11_267957_c1
355 nmdc:mga07m45_9406_c1
356 nmdc:mga05p37_113142_c1
357 nmdc:mga0qj67_141784_c1
358 nmdc:mga06r32_43587_c1
359 nmdc:mga06r32_512849_c1
360 nmdc:mga08y16_318980_c1
361 nmdc:mga0n895_668962_c1
362 nmdc:mga0n895_83963_c1
363 nmdc:mga0a205_290475_c1
364 Ga0500578_0025790
365 Ga0500651_0076426
366 Ga0500594_0003238
367 Ga0500642_0009522
368 Ga0500559_0000326
369 Ga0500568_0074908
370 Ga0500622_0004224
371 Ga0500636_0085747
372 Ga0500645_006086
373 Ga0501084_0089916
374 Ga0501084_0694733
375 Ga0501082_0028334
376 Ga0530510_0035304
377 2770199463
378 2819683561
379 2841916639
380 2841922536

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00005

ABC_tran

ABC transporter

34

183

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
4u00-assembly1.cif.gz_A crystal structure of ttha1159 in complex with adp 0.9846 16 255
4yms-assembly1.cif.gz_A crystal structure of an amino acid abc transporter 0.9814 18 255
3c41-assembly1.cif.gz_K abc protein artp in complex with amp-pnp/mg2+ 0.9749 16 255
4u00-assembly1.cif.gz_A crystal structure of ttha1159 in complex with adp 0.9725 16 255
4yms-assembly1.cif.gz_A crystal structure of an amino acid abc transporter 0.9693 18 255
ID Description Score Start End Superfamily
4ymtJ00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9799 18 255 3.40.50.300
4ymtJ00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9678 18 255 3.40.50.300
af_P0AAF6_1_241_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9598 18 252 3.40.50.300
2pclA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9571 15 235 3.40.50.300
af_P77795_1_218_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9483 16 235 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A2S6DDZ0-F1-model_v4 deleted 0.9982 152 249
AF-A0A1J0UH11-F1-model_v4 deleted 0.9911 18 255
AF-A0A843JDG0-F1-model_v4 Amino acid ABC transporter ATP-binding protein 0.989 131 255 GO:0005524
GO:0005886
GO:0015716
GO:0016887
AF-A0A1V4ZKD1-F1-model_v4 Trehalose/maltose import ATP-binding protein MalK (EC 3.6.3.19) 0.9877 16 255 GO:0005524
GO:0005886
GO:0015716
GO:0016887
AF-A0A2K0X6K2-F1-model_v4 Glutamate ABC transporter ATP-binding protein 0.9875 16 258 GO:0005524
GO:0015424
GO:0016887

Map