F292892

General Info

Members Datasets Scaffolds Average Seq Length
190 122 380 636

Family's Representative Sequence

Representative Sequence 3300042014|Ga0439457_000880|Ga0439457_000880_5141_7141
Length 666
Sequence VKTRIANWPNTSSSKAQNHDAMTKLFNKLRGKDTYRIPELVRLQIIEKACKQVSRGVFFSTIIIITSFLPVFLLTGQEGKLFHPLAYTKTFIMVVDALLVVTLAPVLISFFMKGRFRPETANPVNRVLERIYEPVIRACIKWRKTTIAVNIIALAISIPLLMSLGREFMPPLDEGSLLFMPVTLPDVSNSEVKRILQVQDKIIKTVPEVKNVLGKAGRANTATDNSPISMIETIILLKPQAEWRPGLTKNDIINELNNKLQIPGVTNGWTQPIINRINMLSTGIRTDVGIKVYGQNLDTIYAFSQTIKKQLEGIDGVKDMYVEPITGGKYIDIIIKRDEISRYGLSVDDVNRVIEIALGGMKLTTTVEGRQRFSVNARFGQDFRNNLTALKRLQVQTMNYGPVPLEAVADVTIAEGPPMINSENAMLRGTVLFNVRERDLGSTVNEAREKLDAMISKLPKGYYLEWSGQYENLIRSERTLKMILPVVLLVIFISMYFAFHSAREAFLSLITIPFALIGGAYMIWIWDVNLSVAVAVGFIALFGLAVETGIVMVIYLNDAMQQLVERKGNSRETITKEELREHVIAGAAKRLRPKIMTVCVSLFALVPILWSHGVGSDVMKPIVLPMVGGVLTSATHILLVTPLIFLMAKEYELRKHGKIEVLEAKH

Samples

Sample ID Description Type Environment
1 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
7 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
8 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
9 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
12 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
15 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
21 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
22 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
23 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
26 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
28 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
30 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
32 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
33 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
34 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
35 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
36 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
37 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
38 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
39 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
40 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
41 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
42 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
43 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
44 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
45 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
46 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
47 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300027526 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
69 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
70 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
71 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
72 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
73 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
74 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
75 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
76 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
77 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
78 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
79 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
80 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
81 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
82 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
83 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
84 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
85 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
86 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
87 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
88 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
89 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
90 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
91 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
92 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
93 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
94 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
95 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
96 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
97 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
98 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
99 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
106 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
107 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
108 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
109 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
110 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
111 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
112 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
113 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
114 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
115 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
116 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
117 2523533629 Kaistella palustris DSM 21579 Isolate Rhizosphere
118 2738541278 Niastella sp. CF465 Isolate Unclassified
119 2883068021 Chitinophaga rhizosphaerae T16R-86 Isolate Rhizosphere
120 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
121 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere
122 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.32
Metatranscriptomes 0
Isolates 3.68

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.79
Nodule 0
Rhizoplane 0
Rhizosphere 81.58
Stem 0
Stem Tuber 0
Unclassified 2.63

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0439457_000880 3300042014 Bacteria 9068
2 rootH1_10015865 3300003316 Bacteria 13791
3 rootH1_10033406 3300003316 Bacteria 13122
4 rootH1_10063457 3300003316 Bacteria 3711
5 rootH2_10027487 3300003320 Bacteria 15387
6 rootL2_10015325 3300003322 Bacteria 15212
7 rootL2_10032141 3300003322 Bacteria 4826
8 rootL2_10067705 3300003322 Bacteria 5704
9 rootL2_10076305 3300003322 Bacteria 6344
10 rootH1_10015492 3300003323 Bacteria 90717
11 rootH1_10042911 3300003323 Bacteria 16459
12 rootH1_10092660 3300003323 Bacteria 6005
13 Ga0055531_10001039 3300003794 Bacteria 21983
14 Ga0065165_1006445 3300005262 Bacteria 6148
15 Ga0070676_10045459 3300005328 Bacteria 2558
16 Ga0070666_10000040 3300005335 Bacteria 114115
17 Ga0070680_100005384 3300005336 Bacteria 9686
18 Ga0070682_100000938 3300005337 Bacteria 16996
19 Ga0070660_100007121 3300005339 Bacteria 7774
20 Ga0070659_100017459 3300005366 Bacteria 5403
21 Ga0070685_10008326 3300005466 Bacteria 5323
22 Ga0070698_100018908 3300005471 Bacteria 7248
23 Ga0070698_100020047 3300005471 Bacteria 7010
24 Ga0070679_100002217 3300005530 Bacteria 17543
25 Ga0070679_100007911 3300005530 Bacteria 9974
26 Ga0068853_100011110 3300005539 Bacteria 7304
27 Ga0068853_100035481 3300005539 Unclassified 4236
28 Ga0070665_100043209 3300005548 Bacteria 4529
29 Ga0068855_100010669 3300005563 Bacteria 11084
30 Ga0068855_100018618 3300005563 Bacteria 8352
31 Ga0068852_100049154 3300005616 Bacteria 3607
32 Ga0068859_100000535 3300005617 Bacteria 37575
33 Ga0068864_100151110 3300005618 Bacteria 2103
34 Ga0068863_100001908 3300005841 Bacteria 20709
35 Ga0068863_100006078 3300005841 Bacteria 11842
36 Ga0068860_100000034 3300005843 Bacteria 243128
37 Ga0068860_100069359 3300005843 Unclassified 3351
38 Ga0068865_100014677 3300006881 Bacteria 4983
39 Ga0097620_100000535 3300006931 Bacteria 37575
40 Ga0105240_10010845 3300009093 Bacteria 12763
41 Ga0105240_10046459 3300009093 Bacteria 5501
42 Ga0111539_10007164 3300009094 Bacteria 14294
43 Ga0105247_10000605 3300009101 Bacteria 29002
44 Ga0114129_10012365 3300009147 Bacteria 12151
45 Ga0105241_10003308 3300009174 Bacteria 11992
46 Ga0105241_10011810 3300009174 Bacteria 6415
47 Ga0105237_10021584 3300009545 Bacteria 6619
48 Ga0105237_10070668 3300009545 Bacteria 3487
49 Ga0105249_10004709 3300009553 Bacteria 11776
50 Ga0105249_10023183 3300009553 Bacteria 5567
51 Ga0105249_10056402 3300009553 Unclassified 3596
52 Ga0105239_10003268 3300010375 Bacteria 19998
53 Ga0105239_10022255 3300010375 Bacteria 6986
54 Ga0157373_10011428 3300013100 Bacteria 6530
55 Ga0157373_10014494 3300013100 Bacteria 5778
56 Ga0157373_10024674 3300013100 Bacteria 4355
57 Ga0157373_10070254 3300013100 Bacteria 2475
58 Ga0157371_10002289 3300013102 Bacteria 18458
59 Ga0157371_10005999 3300013102 Bacteria 10128
60 Ga0157370_10001948 3300013104 Bacteria 25412
61 Ga0157370_10005080 3300013104 Bacteria 14841
62 Ga0157370_10115704 3300013104 Bacteria 2505
63 Ga0157369_10016143 3300013105 Bacteria 8406
64 Ga0157378_10014500 3300013297 Bacteria 6901
65 Ga0163162_10000604 3300013306 Bacteria 33260
66 Ga0163162_10015932 3300013306 Bacteria 7348
67 Ga0163162_10025186 3300013306 Bacteria 5880
68 Ga0163162_10123348 3300013306 Bacteria 2696
69 Ga0157372_10007037 3300013307 Bacteria 11984
70 Ga0157372_10027577 3300013307 Bacteria 6188
71 Ga0157375_10005230 3300013308 Bacteria 11263
72 Ga0163163_10072010 3300014325 Unclassified 3445
73 Ga0157380_10000890 3300014326 Bacteria 18755
74 Ga0163161_10012150 3300017792 Bacteria 5972
75 Ga0209026_1000376 3300025250 Bacteria 40964
76 Ga0209257_1000001 3300025304 Bacteria 2274655
77 Ga0207710_10000519 3300025900 Bacteria 23628
78 Ga0207680_10000213 3300025903 Bacteria 27916
79 Ga0207645_10013322 3300025907 Bacteria 5547
80 Ga0207654_10007475 3300025911 Bacteria 5505
81 Ga0207654_10021285 3300025911 Bacteria 3447
82 Ga0207707_10000892 3300025912 Bacteria 29175
83 Ga0207695_10005705 3300025913 Bacteria 16413
84 Ga0207695_10007045 3300025913 Bacteria 14426
85 Ga0207660_10004166 3300025917 Bacteria 9411
86 Ga0207657_10021505 3300025919 Bacteria 6068
87 Ga0207652_10000121 3300025921 Bacteria 85376
88 Ga0207652_10026215 3300025921 Bacteria 4852
89 Ga0207652_10041655 3300025921 Bacteria 3905
90 Ga0207652_10084282 3300025921 Bacteria 2784
91 Ga0207706_10014242 3300025933 Bacteria 7208
92 Ga0207691_10016945 3300025940 Bacteria 6914
93 Ga0207667_10016941 3300025949 Bacteria 8221
94 Ga0207667_10027961 3300025949 Bacteria 6130
95 Ga0207667_10036489 3300025949 Bacteria 5269
96 Ga0207667_10043917 3300025949 Bacteria 4740
97 Ga0207667_10049531 3300025949 Bacteria 4436
98 Ga0207712_10000955 3300025961 Bacteria 20837
99 Ga0207712_10032997 3300025961 Bacteria 3497
100 Ga0207639_10019148 3300026041 Bacteria 4877
101 Ga0207678_10114053 3300026067 Unclassified 2306
102 Ga0207641_10000051 3300026088 Bacteria 174706
103 Ga0207641_10000867 3300026088 Bacteria 31729
104 Ga0207675_100046077 3300026118 Bacteria 4073
105 Ga0207675_100097062 3300026118 Bacteria 2775
106 Ga0207675_100134584 3300026118 Bacteria 2344
107 Ga0209968_1001328 3300027526 Bacteria 3759
108 Ga0268266_10000014 3300028379 Bacteria 644033
109 Ga0268266_10021189 3300028379 Bacteria 5537
110 Ga0268264_10000012 3300028381 Bacteria 521740
111 Ga0307517_10001130 3300028786 Bacteria 45094
112 Ga0307517_10007805 3300028786 Bacteria 15517
113 Ga0307511_10000367 3300030521 Bacteria 48024
114 Ga0265327_10006687 3300031251 Bacteria 9133
115 Ga0307509_10035090 3300031507 Bacteria 5508
116 Ga0307509_10050779 3300031507 Bacteria 4439
117 Ga0307509_10109336 3300031507 Bacteria 2775
118 Ga0307408_100001042 3300031548 Bacteria 21274
119 Ga0307508_10000926 3300031616 Bacteria 34077
120 Ga0307516_10075161 3300031730 Bacteria 3233
121 Ga0307412_10005822 3300031911 Bacteria 6934
122 Ga0307414_10000001 3300032004 Bacteria 1352954
123 Ga0307414_10052936 3300032004 Bacteria 2828
124 Ga0307507_10052946 3300033179 Bacteria 3884
125 Ga0307510_10001454 3300033180 Bacteria 26110
126 Ga0395899_0001179 3300037312 Bacteria 23040
127 Ga0395899_0030352 3300037312 Bacteria 4065
128 Ga0395900_0003400 3300037418 Bacteria 17191
129 Ga0395900_0051758 3300037418 Bacteria 4229
130 Ga0395900_0052235 3300037418 Bacteria 4207
131 Ga0395900_0060791 3300037418 Bacteria 3886
132 Ga0395898_0000595 3300037466 Bacteria 67162
133 Ga0395901_0002782 3300038443 Bacteria 17641
134 Ga0395901_0073526 3300038443 Bacteria 3565
135 Ga0395901_0085626 3300038443 Bacteria 3295
136 Ga0451577_0000044 3300042876 Bacteria 329357
137 Ga0466969_0000207 3300044656 Bacteria 32129
138 Ga0466972_0000009 3300044658 Bacteria 256374
139 Ga0453683_0000601 3300044673 Bacteria 39629
140 Ga0453683_0000710 3300044673 Bacteria 34430
141 Ga0453683_0001298 3300044673 Bacteria 22072
142 Ga0466966_0004931 3300044684 Bacteria 8778
143 Ga0453684_0000283 3300044712 Bacteria 219542
144 Ga0453684_0018124 3300044712 Bacteria 10839
145 Ga0453684_0022824 3300044712 Bacteria 9265
146 Ga0453684_0051293 3300044712 Bacteria 5411
147 Ga0466957_0000309 3300044842 Bacteria 23927
148 Ga0466957_0005479 3300044842 Bacteria 7120
149 Ga0466959_0000236 3300045049 Bacteria 34631
150 Ga0451576_0000047 3300045051 Bacteria 329357
151 Ga0495638_0000003 3300046460 Bacteria 888792
152 Ga0495668_0007431 3300046616 Bacteria 7001
153 Ga0495611_0000057 3300046648 Bacteria 80239
154 Ga0495625_0001791 3300046660 Bacteria 24684
155 Ga0495670_0055533 3300046691 Bacteria 1986
156 Ga0495687_000009 3300047443 Bacteria 419317
157 Ga0495686_0000039 3300047472 Bacteria 304821
158 Ga0495686_0004917 3300047472 Bacteria 10768
159 Ga0501032_0020084 3300049569 Bacteria 4658
160 Ga0501034_0008023 3300049571 Bacteria 11206
161 Ga0501034_0008633 3300049571 Bacteria 10749
162 Ga0501034_0025365 3300049571 Bacteria 6034
163 Ga0501034_0224439 3300049571 Bacteria 1830
164 Ga0501036_0020411 3300049572 Bacteria 5565
165 Ga0501043_0017827 3300049579 Bacteria 5566
166 Ga0501046_0023018 3300049580 Bacteria 5129
167 Ga0501047_0008169 3300049581 Bacteria 9884
168 Ga0501070_0086250 3300049586 Bacteria 2599
169 Ga0501073_0000260 3300049589 Bacteria 34932
170 Ga0501080_0008912 3300049742 Bacteria 9122
171 Ga0501080_0079669 3300049742 Bacteria 3045
172 Ga0501044_0011070 3300049823 Bacteria 9785
173 Ga0501044_0148592 3300049823 Bacteria 2327
174 nmdc:mga05p37_46375_c1 3300050507 Bacteria 5344
175 nmdc:mga08y16_33711_c1 3300050511 Bacteria 5377
176 Ga0500578_0000386 3300053086 Bacteria 54049
177 Ga0500583_0000078 3300053092 Bacteria 58451
178 Ga0500583_0000392 3300053092 Bacteria 14055
179 Ga0500583_0002002 3300053092 Bacteria 6001
180 Ga0500588_0000447 3300053146 Bacteria 6504
181 Ga0500616_0000068 3300053153 Bacteria 235628
182 Ga0500622_0000050 3300053156 Bacteria 145556
183 Ga0500622_0001640 3300053156 Bacteria 17525
184 2520879203 2519899754 Bacteria 5336938
185 2524005262 2523533629 Bacteria 2982326
186 2738725201 2738541278 Bacteria 9755573
187 2883068682 2883068021 Bacteria 6192739
188 2884792745 2884791551 Bacteria 8511252
189 8055593566 8055592153 Bacteria 5961247
190 8056441576 8056440228 Bacteria 4946504
191 Ga0439457_000880
192 rootH1_10015865
193 rootH1_10033406
194 rootH1_10063457
195 rootH2_10027487
196 rootL2_10015325
197 rootL2_10032141
198 rootL2_10067705
199 rootL2_10076305
200 rootH1_10015492
201 rootH1_10042911
202 rootH1_10092660
203 Ga0055531_10001039
204 Ga0065165_1006445
205 Ga0070676_10045459
206 Ga0070666_10000040
207 Ga0070680_100005384
208 Ga0070682_100000938
209 Ga0070660_100007121
210 Ga0070659_100017459
211 Ga0070685_10008326
212 Ga0070698_100018908
213 Ga0070698_100020047
214 Ga0070679_100002217
215 Ga0070679_100007911
216 Ga0068853_100011110
217 Ga0068853_100035481
218 Ga0070665_100043209
219 Ga0068855_100010669
220 Ga0068855_100018618
221 Ga0068852_100049154
222 Ga0068859_100000535
223 Ga0068864_100151110
224 Ga0068863_100001908
225 Ga0068863_100006078
226 Ga0068860_100000034
227 Ga0068860_100069359
228 Ga0068865_100014677
229 Ga0097620_100000535
230 Ga0105240_10010845
231 Ga0105240_10046459
232 Ga0111539_10007164
233 Ga0105247_10000605
234 Ga0114129_10012365
235 Ga0105241_10003308
236 Ga0105241_10011810
237 Ga0105237_10021584
238 Ga0105237_10070668
239 Ga0105249_10004709
240 Ga0105249_10023183
241 Ga0105249_10056402
242 Ga0105239_10003268
243 Ga0105239_10022255
244 Ga0157373_10011428
245 Ga0157373_10014494
246 Ga0157373_10024674
247 Ga0157373_10070254
248 Ga0157371_10002289
249 Ga0157371_10005999
250 Ga0157370_10001948
251 Ga0157370_10005080
252 Ga0157370_10115704
253 Ga0157369_10016143
254 Ga0157378_10014500
255 Ga0163162_10000604
256 Ga0163162_10015932
257 Ga0163162_10025186
258 Ga0163162_10123348
259 Ga0157372_10007037
260 Ga0157372_10027577
261 Ga0157375_10005230
262 Ga0163163_10072010
263 Ga0157380_10000890
264 Ga0163161_10012150
265 Ga0209026_1000376
266 Ga0209257_1000001
267 Ga0207710_10000519
268 Ga0207680_10000213
269 Ga0207645_10013322
270 Ga0207654_10007475
271 Ga0207654_10021285
272 Ga0207707_10000892
273 Ga0207695_10005705
274 Ga0207695_10007045
275 Ga0207660_10004166
276 Ga0207657_10021505
277 Ga0207652_10000121
278 Ga0207652_10026215
279 Ga0207652_10041655
280 Ga0207652_10084282
281 Ga0207706_10014242
282 Ga0207691_10016945
283 Ga0207667_10016941
284 Ga0207667_10027961
285 Ga0207667_10036489
286 Ga0207667_10043917
287 Ga0207667_10049531
288 Ga0207712_10000955
289 Ga0207712_10032997
290 Ga0207639_10019148
291 Ga0207678_10114053
292 Ga0207641_10000051
293 Ga0207641_10000867
294 Ga0207675_100046077
295 Ga0207675_100097062
296 Ga0207675_100134584
297 Ga0209968_1001328
298 Ga0268266_10000014
299 Ga0268266_10021189
300 Ga0268264_10000012
301 Ga0307517_10001130
302 Ga0307517_10007805
303 Ga0307511_10000367
304 Ga0265327_10006687
305 Ga0307509_10035090
306 Ga0307509_10050779
307 Ga0307509_10109336
308 Ga0307408_100001042
309 Ga0307508_10000926
310 Ga0307516_10075161
311 Ga0307412_10005822
312 Ga0307414_10000001
313 Ga0307414_10052936
314 Ga0307507_10052946
315 Ga0307510_10001454
316 Ga0395899_0001179
317 Ga0395899_0030352
318 Ga0395900_0003400
319 Ga0395900_0051758
320 Ga0395900_0052235
321 Ga0395900_0060791
322 Ga0395898_0000595
323 Ga0395901_0002782
324 Ga0395901_0073526
325 Ga0395901_0085626
326 Ga0451577_0000044
327 Ga0466969_0000207
328 Ga0466972_0000009
329 Ga0453683_0000601
330 Ga0453683_0000710
331 Ga0453683_0001298
332 Ga0466966_0004931
333 Ga0453684_0000283
334 Ga0453684_0018124
335 Ga0453684_0022824
336 Ga0453684_0051293
337 Ga0466957_0000309
338 Ga0466957_0005479
339 Ga0466959_0000236
340 Ga0451576_0000047
341 Ga0495638_0000003
342 Ga0495668_0007431
343 Ga0495611_0000057
344 Ga0495625_0001791
345 Ga0495670_0055533
346 Ga0495687_000009
347 Ga0495686_0000039
348 Ga0495686_0004917
349 Ga0501032_0020084
350 Ga0501034_0008023
351 Ga0501034_0008633
352 Ga0501034_0025365
353 Ga0501034_0224439
354 Ga0501036_0020411
355 Ga0501043_0017827
356 Ga0501046_0023018
357 Ga0501047_0008169
358 Ga0501070_0086250
359 Ga0501073_0000260
360 Ga0501080_0008912
361 Ga0501080_0079669
362 Ga0501044_0011070
363 Ga0501044_0148592
364 nmdc:mga05p37_46375_c1
365 nmdc:mga08y16_33711_c1
366 Ga0500578_0000386
367 Ga0500583_0000078
368 Ga0500583_0000392
369 Ga0500583_0002002
370 Ga0500588_0000447
371 Ga0500616_0000068
372 Ga0500622_0000050
373 Ga0500622_0001640
374 2520879203
375 2524005262
376 2738725201
377 2883068682
378 2884792745
379 8055593566
380 8056441576

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00873

ACR_tran

AcrB/AcrD/AcrF family

24

649

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
4dnt-assembly1.cif.gz_A crystal structure of the cusba heavy-metal efflux complex from escherichia coli, mutant 0.6405 13 639
6ajj-assembly1.cif.gz_A crystal structure of mycolic acid transporter mmpl3 from mycobacterium smegmatis complexed with ica38 0.639 39 638
6n40-assembly1.cif.gz_A crystal structure of mmpl3 from mycobacterium smegmatis 0.6373 46 638
4dop-assembly1.cif.gz_A crystal structure of the cusba heavy-metal efflux complex from escherichia coli, r mutant 0.6356 13 638
3k07-assembly1.cif.gz_A crystal structure of cusa 0.6353 13 638
ID Description Score Start End Superfamily
af_P38054_878_1046_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9414 479 645 1.20.1640.10
af_P38054_878_1046_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9146 479 645 1.20.1640.10
af_P38054_335_507_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.8956 471 638 1.20.1640.10
3w9iC05 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.8889 473 639 1.20.1640.10
af_P24181_868_1032_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.8886 468 639 1.20.1640.10
ID Description Score Start End GO Terms
AF-A0A3C0UZC9-F1-model_v4 AcrB/AcrD/AcrF family protein 0.974 524 657 GO:0005886
GO:0042910
AF-A0A3C0UZC9-F1-model_v4 AcrB/AcrD/AcrF family protein 0.9599 524 657 GO:0005886
GO:0042910
AF-A0A2G3J6L8-F1-model_v4 CusA/CzcA family heavy metal efflux RND transporter 0.9484 464 645 GO:0005886
GO:0042910
AF-A0A2M8E880-F1-model_v4 CusA/CzcA family heavy metal efflux RND transporter 0.9401 449 647 GO:0005886
GO:0042910
AF-A0A2V6BBC9-F1-model_v4 YtkA-like domain-containing protein 0.9215 449 651 GO:0005886
GO:0042910

Map