F292164

General Info

Members Datasets Scaffolds Average Seq Length
190 147 380 312

Family's Representative Sequence

Representative Sequence 3300005539|Ga0068853_100155873|Ga0068853_1001558732
Length 325
Sequence MNEGTGERMTTPSEQAQRQADKQEDPGLGTIMSERRQLLNLAYRLLGSLADAEDVVQETYARWYTMSRADQESIESPGAWLTKVAGCICLNLLGSARARRETYVGEWIPEPLPAPAEWIAGAAGGAGVDPADRITLDESVTMAFLVVFESMTPAERVAFVLHDVFRYPFAEVAEIVGRSPAACRQLASSARRRVATARAETIPDAARQASVVRRFKAAWEAQDIEALIGLLDPDATAISDGGGRVIAHRLPIEGAEQIARLYLTIARLAPPRTILERTVNGLPGLVVESEGRTDTVFAFEIADDDRITHIWAVRNPDKLRPWQPS

Samples

Sample ID Description Type Environment
1 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
4 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
5 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
6 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
10 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
11 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
12 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
13 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
14 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
15 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
16 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
17 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
18 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
19 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
22 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
23 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
24 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
25 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
26 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
27 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
29 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
31 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
33 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
34 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
35 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
36 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
37 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
38 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
55 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
56 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
57 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
58 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
59 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
60 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
61 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
62 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
63 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
64 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
65 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
66 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
67 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
68 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
69 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
70 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
71 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
72 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
73 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
74 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
75 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
76 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
77 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
78 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
79 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
80 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
81 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
82 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
83 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
84 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
85 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
86 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
87 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
88 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
89 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
90 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
91 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
92 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
93 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
94 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
95 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
96 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
97 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
98 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
99 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
100 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
101 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
102 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
103 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
104 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
105 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
106 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
107 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
108 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
109 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
110 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
111 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
112 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
113 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
114 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
115 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
116 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
117 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
118 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
120 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
121 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
123 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
124 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
125 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
126 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
128 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
129 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
130 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
131 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
132 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
133 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
134 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
135 2515154155 Actinopolymorpha alba DSM 45243 Isolate Rhizosphere
136 2773857921 Frankia asymbiotica NRRL B-16386 Isolate Nodule
137 2808606372 Agromyces sp. 23-23 Isolate Unclassified
138 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
139 2868088558 Phytoactinopolyspora endophytica EGI 60009 Isolate Unclassified
140 2880495981 Micromonospora vinacea DSM 101695 Isolate Unclassified
141 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
142 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
143 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
144 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
145 2899359706 Amycolatopsis anabasis EGI 650086 Isolate Unclassified
146 2990044586 Streptomyces sedi JCM 16909 Isolate Unclassified
147 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.63
Metatranscriptomes 0
Isolates 7.37

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.05
Nodule 0.53
Rhizoplane 5.26
Rhizosphere 85.79
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068853_100155873 3300005539 Bacteria 2058
2 rootH1_10035700 3300003323 Bacteria 8355
3 JGI25407J50210_10000956 3300003373 Bacteria 6236
4 JGI25407J50210_10001936 3300003373 Bacteria 4808
5 Ga0070688_100062719 3300005365 Bacteria 2353
6 Ga0070659_100030756 3300005366 Bacteria 4155
7 Ga0070709_10322846 3300005434 Bacteria 1134
8 Ga0070714_100010107 3300005435 Bacteria 7449
9 Ga0070711_100020163 3300005439 Bacteria 4292
10 Ga0070700_100166811 3300005441 Bacteria 1521
11 Ga0068853_100278492 3300005539 Bacteria 1542
12 Ga0070665_100090211 3300005548 Bacteria 3071
13 Ga0068855_100004156 3300005563 Bacteria 17664
14 Ga0068856_100040224 3300005614 Bacteria 4591
15 Ga0068859_100087505 3300005617 Bacteria 3163
16 Ga0068864_100013864 3300005618 Bacteria 6680
17 Ga0068866_10073917 3300005718 Bacteria 1810
18 Ga0068861_100070505 3300005719 Bacteria 2706
19 Ga0068858_100020185 3300005842 Bacteria 6230
20 Ga0068860_100313936 3300005843 Bacteria 1537
21 Ga0068862_100353184 3300005844 Bacteria 1364
22 Ga0081455_10002213 3300005937 Bacteria 23164
23 Ga0081455_10016291 3300005937 Bacteria 7182
24 Ga0081538_10000036 3300005981 Bacteria 119944
25 Ga0081538_10000154 3300005981 Bacteria 71483
26 Ga0081538_10029748 3300005981 Bacteria 3724
27 Ga0070717_10025605 3300006028 Bacteria 4695
28 Ga0070717_10201427 3300006028 Bacteria 1744
29 Ga0075428_100005255 3300006844 Bacteria 14393
30 Ga0075428_100009376 3300006844 Bacteria 10858
31 Ga0075428_100027247 3300006844 Bacteria 6326
32 Ga0075430_100005199 3300006846 Bacteria 10967
33 Ga0075430_100053185 3300006846 Bacteria 3410
34 Ga0075431_100007310 3300006847 Bacteria 10999
35 Ga0075431_100012340 3300006847 Bacteria 8623
36 Ga0075429_100021928 3300006880 Bacteria 5537
37 Ga0097620_100087507 3300006931 Bacteria 3163
38 Ga0105250_10072229 3300009092 Bacteria 1395
39 Ga0111539_10032953 3300009094 Bacteria 6291
40 Ga0105247_10040241 3300009101 Bacteria 2857
41 Ga0114129_10031917 3300009147 Bacteria 7447
42 Ga0114129_10086693 3300009147 Bacteria 4342
43 Ga0114129_10092307 3300009147 Bacteria 4195
44 Ga0114129_10544563 3300009147 Bacteria 1510
45 Ga0105243_10101972 3300009148 Bacteria 2384
46 Ga0105237_10052289 3300009545 Bacteria 4101
47 Ga0105249_10117413 3300009553 Bacteria 2523
48 Ga0105239_10412189 3300010375 Bacteria 1530
49 Ga0105246_10016030 3300011119 Bacteria 4741
50 Ga0157379_10091909 3300014968 Bacteria 2722
51 Ga0157379_10276878 3300014968 Bacteria 1527
52 Ga0207696_1039170 3300025711 Bacteria 1395
53 Ga0207688_10000846 3300025901 Bacteria 15403
54 Ga0207647_10019934 3300025904 Bacteria 4503
55 Ga0207647_10088364 3300025904 Bacteria 1851
56 Ga0207699_10255120 3300025906 Bacteria 1210
57 Ga0207693_10009119 3300025915 Bacteria 8099
58 Ga0207663_10040878 3300025916 Bacteria 2822
59 Ga0207664_10119848 3300025929 Bacteria 2200
60 Ga0207664_10272390 3300025929 Bacteria 1483
61 Ga0207669_10235835 3300025937 Bacteria 1353
62 Ga0207667_10004658 3300025949 Bacteria 16805
63 Ga0207668_10005675 3300025972 Bacteria 7347
64 Ga0207703_10049225 3300026035 Bacteria 3406
65 Ga0207639_10189380 3300026041 Bacteria 1756
66 Ga0207639_10191409 3300026041 Bacteria 1748
67 Ga0207639_10271416 3300026041 Bacteria 1488
68 Ga0207708_10021140 3300026075 Bacteria 4908
69 Ga0207702_10018736 3300026078 Bacteria 5726
70 Ga0207674_10087809 3300026116 Bacteria 3103
71 Ga0207675_100084768 3300026118 Bacteria 2973
72 Ga0207428_10003746 3300027907 Bacteria 14595
73 Ga0265338_10044789 3300028800 Bacteria 4078
74 Ga0307408_100035537 3300031548 Bacteria 3498
75 Ga0307508_10017926 3300031616 Bacteria 6433
76 Ga0307514_10109113 3300031649 Bacteria 1966
77 Ga0307405_10010069 3300031731 Bacteria 4878
78 Ga0307405_10036193 3300031731 Bacteria 2955
79 Ga0307413_10067893 3300031824 Bacteria 2231
80 Ga0307410_10326291 3300031852 Bacteria 1219
81 Ga0307406_10059275 3300031901 Bacteria 2464
82 Ga0307406_10237526 3300031901 Bacteria 1365
83 Ga0307407_10094649 3300031903 Bacteria 1839
84 Ga0307409_100001616 3300031995 Bacteria 11276
85 Ga0307416_100004148 3300032002 Bacteria 8682
86 Ga0307416_100004421 3300032002 Bacteria 8471
87 Ga0307416_100019156 3300032002 Bacteria 4845
88 Ga0307416_100341792 3300032002 Bacteria 1510
89 Ga0307414_10037734 3300032004 Bacteria 3238
90 Ga0307414_10049510 3300032004 Bacteria 2906
91 Ga0307415_100001143 3300032126 Bacteria 12403
92 Ga0307415_100007268 3300032126 Bacteria 6048
93 Ga0307415_100043629 3300032126 Bacteria 2993
94 Ga0307507_10000008 3300033179 Bacteria 266336
95 Ga0307507_10150371 3300033179 Bacteria 1754
96 Ga0373925_0025570 3300037068 Bacteria 4314
97 Ga0395900_0276083 3300037418 Bacteria 1674
98 Ga0395898_0420653 3300037466 Bacteria 1273
99 Ga0395901_0334769 3300038443 Bacteria 1564
100 Ga0439445_0005986 3300042004 Bacteria 2786
101 Ga0466969_0102145 3300044656 Bacteria 1348
102 Ga0466966_0009629 3300044684 Bacteria 6394
103 Ga0466970_0012042 3300044765 Bacteria 4418
104 Ga0466959_0003715 3300045049 Bacteria 10078
105 Ga0466967_0112633 3300045976 Bacteria 2502
106 Ga0495592_0104366 3300046454 Bacteria 2015
107 Ga0495603_0001624 3300046455 Bacteria 13193
108 Ga0495603_0004653 3300046455 Bacteria 8202
109 Ga0495629_0000836 3300046459 Bacteria 24977
110 Ga0495629_0335084 3300046459 Bacteria 1033
111 Ga0495638_0159527 3300046460 Bacteria 1302
112 Ga0495651_0017733 3300046462 Bacteria 5512
113 Ga0495605_0002534 3300046474 Bacteria 11258
114 Ga0495596_0013472 3300046500 Bacteria 3469
115 Ga0495583_0017821 3300046506 Bacteria 3757
116 Ga0495606_0047064 3300046507 Bacteria 2846
117 Ga0495610_0055058 3300046512 Bacteria 1919
118 Ga0495620_0024153 3300046515 Bacteria 2894
119 Ga0495631_0006472 3300046518 Bacteria 6042
120 Ga0495632_0027754 3300046519 Bacteria 2961
121 Ga0495637_0086637 3300046520 Bacteria 1241
122 Ga0495597_0010261 3300046542 Bacteria 4585
123 Ga0495668_0013511 3300046616 Bacteria 4812
124 Ga0495625_0015802 3300046660 Bacteria 5959
125 Ga0495625_0133231 3300046660 Bacteria 1682
126 Ga0495588_0003327 3300046674 Bacteria 6977
127 Ga0495613_0080146 3300046689 Bacteria 2374
128 Ga0495624_0082019 3300046690 Bacteria 1996
129 Ga0495649_0010242 3300046694 Bacteria 5538
130 Ga0495600_0084586 3300046809 Bacteria 2070
131 Ga0495581_0062418 3300047315 Bacteria 2153
132 Ga0495676_0009744 3300047321 Bacteria 8732
133 Ga0495680_0011168 3300047322 Bacteria 7974
134 Ga0495687_004268 3300047443 Bacteria 9778
135 Ga0495687_060185 3300047443 Bacteria 1567
136 Ga0495686_0018676 3300047472 Bacteria 4645
137 Ga0495593_0062712 3300047673 Bacteria 1942
138 Ga0495614_0001859 3300048089 Bacteria 9253
139 Ga0495614_0002953 3300048089 Bacteria 7578
140 Ga0495614_0106419 3300048089 Bacteria 1229
141 Ga0495626_0021514 3300048091 Bacteria 3200
142 Ga0496103_0017410 3300048906 Bacteria 4302
143 Ga0496105_0377186 3300048908 Bacteria 1129
144 Ga0496108_0003094 3300048911 Bacteria 13378
145 Ga0496108_0175810 3300048911 Bacteria 1853
146 Ga0496109_0003565 3300048912 Bacteria 12998
147 Ga0496110_0015838 3300048913 Bacteria 6287
148 Ga0496110_0099172 3300048913 Bacteria 2612
149 Ga0496111_0256399 3300048914 Bacteria 1298
150 Ga0496113_0072955 3300048916 Bacteria 2614
151 Ga0496114_0501896 3300048917 Bacteria 1073
152 Ga0495682_0068208 3300049460 Bacteria 1281
153 Ga0501033_0087583 3300049570 Bacteria 2279
154 Ga0501034_0007671 3300049571 Bacteria 11481
155 Ga0501034_0184874 3300049571 Bacteria 2048
156 Ga0501036_0010416 3300049572 Bacteria 7675
157 Ga0501043_0106317 3300049579 Bacteria 2204
158 Ga0501047_0031316 3300049581 Bacteria 5129
159 Ga0501047_0034516 3300049581 Bacteria 4884
160 Ga0501047_0035429 3300049581 Bacteria 4822
161 Ga0501071_0133148 3300049587 Bacteria 1848
162 Ga0501076_0013371 3300049592 Bacteria 6155
163 Ga0501080_0076063 3300049742 Bacteria 3123
164 Ga0501035_0037222 3300049822 Bacteria 4407
165 Ga0501044_0029918 3300049823 Bacteria 5741
166 nmdc:mga05p37_1060_c1 3300050507 Bacteria 31438
167 nmdc:mga05p37_64664_c1 3300050507 Bacteria 4501
168 nmdc:mga09592_41390_c1 3300050508 Bacteria 3875
169 nmdc:mga09592_473_c1 3300050508 Bacteria 30066
170 nmdc:mga0qj67_16708_c1 3300050509 Bacteria 5571
171 nmdc:mga0qj67_45372_c1 3300050509 Bacteria 3468
172 nmdc:mga06r32_21_c1 3300050510 Bacteria 96559
173 nmdc:mga06r32_5724_c1 3300050510 Bacteria 11193
174 nmdc:mga08y16_68499_c1 3300050511 Bacteria 3700
175 Ga0500644_0088237 3300053088 Bacteria 1155
176 Ga0500646_0000746 3300053090 Bacteria 9143
177 2515855078 2515154155 Bacteria 7985436
178 2515857573 2515154155 Bacteria 7985436
179 2774846637 2773857921 Bacteria 9435764
180 2808902658 2808606372 Bacteria 4649509
181 2819693875 2818991463 Bacteria 7948711
182 2868090198 2868088558 Bacteria 7609351
183 2880502445 2880495981 Bacteria 7340502
184 2884698859 2884693830 Bacteria 11273186
185 2891402349 2891395885 Bacteria 9251614
186 2895432575 2895427314 Bacteria 13147766
187 2895450098 2895442618 Bacteria 11027144
188 2899365376 2899359706 Bacteria 10940472
189 2990048864 2990044586 Bacteria 6603797
190 3006500698 3006493962 Bacteria 8825450
191 Ga0068853_100155873
192 rootH1_10035700
193 JGI25407J50210_10000956
194 JGI25407J50210_10001936
195 Ga0070688_100062719
196 Ga0070659_100030756
197 Ga0070709_10322846
198 Ga0070714_100010107
199 Ga0070711_100020163
200 Ga0070700_100166811
201 Ga0068853_100278492
202 Ga0070665_100090211
203 Ga0068855_100004156
204 Ga0068856_100040224
205 Ga0068859_100087505
206 Ga0068864_100013864
207 Ga0068866_10073917
208 Ga0068861_100070505
209 Ga0068858_100020185
210 Ga0068860_100313936
211 Ga0068862_100353184
212 Ga0081455_10002213
213 Ga0081455_10016291
214 Ga0081538_10000036
215 Ga0081538_10000154
216 Ga0081538_10029748
217 Ga0070717_10025605
218 Ga0070717_10201427
219 Ga0075428_100005255
220 Ga0075428_100009376
221 Ga0075428_100027247
222 Ga0075430_100005199
223 Ga0075430_100053185
224 Ga0075431_100007310
225 Ga0075431_100012340
226 Ga0075429_100021928
227 Ga0097620_100087507
228 Ga0105250_10072229
229 Ga0111539_10032953
230 Ga0105247_10040241
231 Ga0114129_10031917
232 Ga0114129_10086693
233 Ga0114129_10092307
234 Ga0114129_10544563
235 Ga0105243_10101972
236 Ga0105237_10052289
237 Ga0105249_10117413
238 Ga0105239_10412189
239 Ga0105246_10016030
240 Ga0157379_10091909
241 Ga0157379_10276878
242 Ga0207696_1039170
243 Ga0207688_10000846
244 Ga0207647_10019934
245 Ga0207647_10088364
246 Ga0207699_10255120
247 Ga0207693_10009119
248 Ga0207663_10040878
249 Ga0207664_10119848
250 Ga0207664_10272390
251 Ga0207669_10235835
252 Ga0207667_10004658
253 Ga0207668_10005675
254 Ga0207703_10049225
255 Ga0207639_10189380
256 Ga0207639_10191409
257 Ga0207639_10271416
258 Ga0207708_10021140
259 Ga0207702_10018736
260 Ga0207674_10087809
261 Ga0207675_100084768
262 Ga0207428_10003746
263 Ga0265338_10044789
264 Ga0307408_100035537
265 Ga0307508_10017926
266 Ga0307514_10109113
267 Ga0307405_10010069
268 Ga0307405_10036193
269 Ga0307413_10067893
270 Ga0307410_10326291
271 Ga0307406_10059275
272 Ga0307406_10237526
273 Ga0307407_10094649
274 Ga0307409_100001616
275 Ga0307416_100004148
276 Ga0307416_100004421
277 Ga0307416_100019156
278 Ga0307416_100341792
279 Ga0307414_10037734
280 Ga0307414_10049510
281 Ga0307415_100001143
282 Ga0307415_100007268
283 Ga0307415_100043629
284 Ga0307507_10000008
285 Ga0307507_10150371
286 Ga0373925_0025570
287 Ga0395900_0276083
288 Ga0395898_0420653
289 Ga0395901_0334769
290 Ga0439445_0005986
291 Ga0466969_0102145
292 Ga0466966_0009629
293 Ga0466970_0012042
294 Ga0466959_0003715
295 Ga0466967_0112633
296 Ga0495592_0104366
297 Ga0495603_0001624
298 Ga0495603_0004653
299 Ga0495629_0000836
300 Ga0495629_0335084
301 Ga0495638_0159527
302 Ga0495651_0017733
303 Ga0495605_0002534
304 Ga0495596_0013472
305 Ga0495583_0017821
306 Ga0495606_0047064
307 Ga0495610_0055058
308 Ga0495620_0024153
309 Ga0495631_0006472
310 Ga0495632_0027754
311 Ga0495637_0086637
312 Ga0495597_0010261
313 Ga0495668_0013511
314 Ga0495625_0015802
315 Ga0495625_0133231
316 Ga0495588_0003327
317 Ga0495613_0080146
318 Ga0495624_0082019
319 Ga0495649_0010242
320 Ga0495600_0084586
321 Ga0495581_0062418
322 Ga0495676_0009744
323 Ga0495680_0011168
324 Ga0495687_004268
325 Ga0495687_060185
326 Ga0495686_0018676
327 Ga0495593_0062712
328 Ga0495614_0001859
329 Ga0495614_0002953
330 Ga0495614_0106419
331 Ga0495626_0021514
332 Ga0496103_0017410
333 Ga0496105_0377186
334 Ga0496108_0003094
335 Ga0496108_0175810
336 Ga0496109_0003565
337 Ga0496110_0015838
338 Ga0496110_0099172
339 Ga0496111_0256399
340 Ga0496113_0072955
341 Ga0496114_0501896
342 Ga0495682_0068208
343 Ga0501033_0087583
344 Ga0501034_0007671
345 Ga0501034_0184874
346 Ga0501036_0010416
347 Ga0501043_0106317
348 Ga0501047_0031316
349 Ga0501047_0034516
350 Ga0501047_0035429
351 Ga0501071_0133148
352 Ga0501076_0013371
353 Ga0501080_0076063
354 Ga0501035_0037222
355 Ga0501044_0029918
356 nmdc:mga05p37_1060_c1
357 nmdc:mga05p37_64664_c1
358 nmdc:mga09592_41390_c1
359 nmdc:mga09592_473_c1
360 nmdc:mga0qj67_16708_c1
361 nmdc:mga0qj67_45372_c1
362 nmdc:mga06r32_21_c1
363 nmdc:mga06r32_5724_c1
364 nmdc:mga08y16_68499_c1
365 Ga0500644_0088237
366 Ga0500646_0000746
367 2515855078
368 2515857573
369 2774846637
370 2808902658
371 2819693875
372 2868090198
373 2880502445
374 2884698859
375 2891402349
376 2895432575
377 2895450098
378 2899365376
379 2990048864
380 3006500698

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08281

Sigma70_r4_2

Sigma-70, region 4

141

194

0.92

PF04542

Sigma70_r2

Sigma-70 region 2

30

99

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
5fgm-assembly1.cif.gz_A streptomyces coelicolor sigr region 4 0.8969 125 178
3vfz-assembly3.cif.gz_A crystal structure of -35 promoter binding domain of sigd of mycobacterium tuberculosis 0.8962 121 178
3n97-assembly1.cif.gz_A rna polymerase alpha c-terminal domain (e. coli) and sigma region 4 (t. aq. mutant) bound to (up,-35 element) dna 0.8885 132 176
3p7n-assembly2.cif.gz_B crystal structure of light activated transcription factor el222 from erythrobacter litoralis 0.8602 128 176
1h3l-assembly1.cif.gz_A n-terminal fragment of sigr from streptomyces coelicolor 0.8595 10 72
ID Description Score Start End Superfamily
af_Q65WX7_129_225_1.10.472.10 Mainly Alpha;Orthogonal Bundle;Cyclin A; domain 1;Cyclin-like 0.9217 134 177 1.10.472.10
af_P9WGG5_46_131_1.10.1740.10 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.8887 10 76 1.10.1740.10
3vfzA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8793 122 178 1.10.10.10
2o8xC00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8758 122 174 1.10.10.10
1h3lA00 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.8595 10 72 1.10.1740.10
ID Description Score Start End GO Terms
AF-A0A0P9F209-F1-model_v4 Cholesterol oxidase (EC 1.1.3.6) (EC 5.3.3.1) (Cholesterol isomerase) 0.934 205 298 GO:0016614
AF-A0A1Q3LB80-F1-model_v4 SnoaL-like domain-containing protein 0.923 210 298 GO:0016987
AF-A0A7K3F8H0-F1-model_v4 deleted 0.9226 186 301
AF-A0A6B2DHY7-F1-model_v4 RNA polymerase subunit sigma-24 0.9197 184 298 GO:0016987
AF-A0A543EFB9-F1-model_v4 SnoaL-like protein 0.9179 187 301 GO:0016987

Map