F291758

General Info

Members Datasets Scaffolds Average Seq Length
189 179 91 481

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|3004289098|3004295022
Length 554
Sequence LKCRNQPVIVRRQADGGTQIAFVAGFSPRLDDNPLLQKIGGEARTITLAVEEQEVCLRRRNPETKANKSGGCAHALRDVVGASNVRTGEDTEAIDLGSNGANCGAGIVVAPLSTGEVAAVARICHQNGIAIVPQGGKTGLVGGSVSRPGEIVLSMTRMNRIERLDPVERVAVVDAGVTLEALQEAAREHRLEPGIDLAARGSATIGGMVSTNAGGVMAFRNGVMRHRVLGLEAVLADGSIYSDLTRVVKNSAGYDLKHLFIGAEGTLGIVTRVVVKLDPSPLASATALFGLPSVEAALRTIRLALESEAGHLRAAEAMWTSYFGLAAAAHGWSEPGVPLDQPLFLLLSLGGAREEALREDFERIYSEVMERYPEATGIIAGSRRQEDDLWRLREDTSVLYRAHPDAPSFDVSVPLSEIPAYLDRILPKLAAIEPGLAPYIFGHLADGNLHIILNRRGPLAPEIAEGVEGVLYQQLREIGGSFSAEHGVGSKRIHSLLATADPTKLAVMERVKRVLDDQSIMNPDKVLPRDAWFVRSSRPSHSGSFKNVSNLTDE

Samples

Sample ID Description Type Environment
1 2511231027 Phyllobacterium sp. YR531 Isolate Rhizosphere
2 2515154114 Rhizobium ruizarguesonis Vh3 Isolate Nodule
3 2534681796 Rhizobium grahamii CCGE 502 Isolate Nodule
4 2554235003 Agrobacterium tumefaciens WRT31 Isolate Rhizosphere
5 2558860242 Agrobacterium fabacearum P4 Isolate Rhizosphere
6 2582581866 Rhizobium sp. CF097 Isolate Rhizosphere
7 2599185156 Rhizobium sp. NFR03 Isolate Rhizoplane
8 2599185352 Sinorhizobium sp. NFACC03 Isolate Rhizoplane
9 2606217733 Pseudomonas aeruginosa NFHH01 Isolate Rhizoplane
10 2617270742 Rhizobium miluonense HAMBI 2971 Isolate Nodule
11 2643221550 Mesorhizobium sp. Root552 Isolate Unclassified
12 2643221618 Ensifer sp. Root231 Isolate Unclassified
13 2643221626 Ensifer sp. Root31 Isolate Unclassified
14 2643221655 Ensifer sp. Root1252 Isolate Unclassified
15 2643221659 Ensifer sp. Root127 Isolate Unclassified
16 2643221693 Rhizobium sp. Root491 Isolate Unclassified
17 2643221712 Ensifer sp. Root258 Isolate Unclassified
18 2643221723 Ensifer sp. Root278 Isolate Unclassified
19 2693429783 Mesorhizobium sp. LCM 4577 Isolate Rhizosphere
20 2693429784 Mesorhizobium sp. LCM 4576 Isolate Rhizosphere
21 2724679232 Rhizobium leguminosarum Vaf12 Isolate Unclassified
22 2767802442 Phyllobacterium brassicacearum 29-15 Isolate Rhizoplane
23 2808606387 Rhizobium sp. SJZ105 Isolate Rhizosphere
24 2838042994 Rhizobium esperanzae SEMIA 4089 Isolate Nodule
25 2840764183 Phyllobacterium sophorae CCBAU 03422 Isolate Unclassified
26 2842395702 Rhizobium ecuadorense SEMIA 4029 Isolate Nodule
27 2842871566 Phyllobacterium sp. R-73111 Isolate Unclassified
28 2842922631 Pararhizobium sp. R-72066 Isolate Unclassified
29 2844163670 Ensifer sp. 1H6 Isolate Unclassified
30 2851182111 Bosea sp. Tri-44 Isolate Nodule
31 2856320880 Mesorhizobium sp. M8A.F.Ca.ET.165.01.1.1 Isolate Nodule
32 2856334872 Mesorhizobium sp. M7A.F.Ca.US.005.03.1.1 Isolate Nodule
33 2857367948 Mesorhizobium sp. M7A.F.Ca.US.002.01.1.1 Isolate Nodule
34 2869271264 Mesorhizobium sp. M7A.F.Ca.AU.002.06.1.1 Isolate Nodule
35 2869278585 Mesorhizobium sp. M8A.F.Ca.ET.198.01.1.1 Isolate Nodule
36 2874139085 Mesorhizobium sp. M8A.F.Ca.ET.207.01.1.1 Isolate Nodule
37 2874162495 Mesorhizobium sp. M7A.F.Ca.CA.002.11.2.1 Isolate Nodule
38 2876399893 Mesorhizobium sp. M7A.F.Ca.AU.002.03.1.1 Isolate Nodule
39 2878738818 Mesorhizobium sp. M8A.F.Ca.ET.218.01.1.1 Isolate Nodule
40 2878774303 Mesorhizobium sp. M7A.F.Ca.CA.002.15.1.1 Isolate Nodule
41 2888337043 Mesorhizobium sp. M8A.F.Ca.ET.057.01.1.1 Isolate Nodule
42 2894652903 Phyllobacterium sp. SYP-B3895 Isolate Rhizosphere
43 2899845264 Agrobacterium fabacearum CNPSo 675 Isolate Unclassified
44 2906408224 Mesorhizobium sp. M7A.F.Ca.CA.002.03.1.1 Isolate Nodule
45 2909042592 Labrys sp. LIt4 Isolate Nodule
46 2922172374 Mesorhizobium sp. M7A.F.Ca.CA.002.06.1.1 Isolate Nodule
47 2924718760 Mesorhizobium sp. M8A.F.Ca.ET.023.01.1.1 Isolate Nodule
48 2924733363 Mesorhizobium sp. M7A.F.Ca.US.011.01.1.1 Isolate Nodule
49 2924748358 Mesorhizobium sp. M7A.F.Ca.CA.002.14.1.2 Isolate Nodule
50 2924762789 Mesorhizobium sp. WSM4303 Isolate Unclassified
51 2924776078 Mesorhizobium sp. M8A.F.Ca.ET.213.01.1.1 Isolate Nodule
52 2926760298 Agrobacterium tumefaciens SLBN-170 Isolate Rhizosphere
53 2928521798 Phyllobacterium ifriqiyense 1451 Isolate Rhizosphere
54 2937848649 Mesorhizobium sp. WSM4310 Isolate Unclassified
55 2937877337 Mesorhizobium sp. M8A.F.Ca.ET.161.01.1.1 Isolate Nodule
56 2937972304 Mesorhizobium sp. M8A.F.Ca.ET.173.01.1.1 Isolate Nodule
57 2954011201 Phyllobacterium ifrigiyense W4I11 Isolate Rhizosphere
58 2958034702 Mesorhizobium sp. M8A.F.Ca.ET.202.01.1.1 Isolate Nodule
59 2958041894 Mesorhizobium sp. M00.F.Ca.ET.149.01.1.1 Isolate Nodule
60 2958064165 Mesorhizobium sp. SARCC-RB16n Isolate Unclassified
61 2958084443 Mesorhizobium sp. M8A.F.Ca.ET.142.01.1.1 Isolate Nodule
62 2958092219 Mesorhizobium sp. M8A.F.Ca.ET.059.01.1.1 Isolate Nodule
63 2958122699 Mesorhizobium sp. M7A.F.Ca.US.001.04.2.1 Isolate Nodule
64 2958137437 Mesorhizobium sp. M7A.F.Ca.CA.002.04.1.1 Isolate Nodule
65 2958144490 Mesorhizobium sp. M8A.F.Ca.ET.021.01.1.1 Isolate Nodule
66 2961136820 Mesorhizobium sp. M7A.F.Ca.AU.001.01.1.1 Isolate Nodule
67 2965025482 Mesorhizobium sp. Primo-A Isolate Nodule
68 2965047637 Mesorhizobium sp. M7A.F.Ca.US.014.04.1.1 Isolate Nodule
69 2965110997 Mesorhizobium sp. M7A.F.Ca.US.003.02.2.1 Isolate Nodule
70 2968016561 Mesorhizobium sp. M8A.F.Ca.ET.182.01.1.1 Isolate Nodule
71 2970469710 Mesorhizobium sp. M8A.F.Ca.ET.181.01.1.1 Isolate Nodule
72 2970489779 Mesorhizobium sp. M7A.F.Ca.US.008.03.1.1 Isolate Nodule
73 2970547951 Mesorhizobium sp. M7A.F.Ca.AU.002.04.1.1 Isolate Nodule
74 2970593180 Mesorhizobium sp. M8A.F.Ca.ET.197.01.1.1 Isolate Nodule
75 2977872689 Mesorhizobium sp. M7A.F.Ca.US.001.04.1.1 Isolate Nodule
76 2977922695 Mesorhizobium sp. WSM4305 Isolate Unclassified
77 2977935797 Mesorhizobium sp. M7A.F.Ca.CA.002.12.1.1 Isolate Nodule
78 2977957713 Mesorhizobium sp. M7A.F.Ca.US.001.02.1.1 Isolate Nodule
79 2979089926 Agrobacterium sp. SORGH_AS 745 Isolate Unclassified
80 2979095461 Agrobacterium tumefaciens SORGH_AS 749 Isolate Unclassified
81 2979793036 Mesorhizobium sp. M7A.F.Ca.US.007.01.1.1 Isolate Nodule
82 2987645492 Mesorhizobium sp. M7A.F.Ca.CA.002.10.1.1 Isolate Nodule
83 2987666974 Mesorhizobium sp. WSM4306 Isolate Unclassified
84 2987673487 Mesorhizobium sp. M7A.F.Ca.US.003.02.1.1 Isolate Nodule
85 2996348954 Mesorhizobium sp. M8A.F.Ca.ET.167.01.1.1 Isolate Nodule
86 3000135777 Unclassified bacterium M00.F.Ca.ET.205.01.1.1 Isolate Unclassified
87 3004211236 Mesorhizobium sp. WSM4307 Isolate Unclassified
88 3004218560 Mesorhizobium sp. WSM4315 Isolate Unclassified
89 3004239961 Mesorhizobium sp. M7A.F.Ca.US.005.03.2.1 Isolate Nodule
90 3004275668 Mesorhizobium sp. M8A.F.Ca.ET.208.01.1.1 Isolate Nodule
91 3004289098 Mesorhizobium sp. M8A.F.Ca.ET.023.02.2.1 Isolate Nodule
92 3004334049 Mesorhizobium huakuii 583 Isolate Unclassified
93 3005409236 Rhizobium sp. P32RR-XVIII Isolate Rhizosphere
94 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
95 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
96 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
97 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
98 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
99 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
100 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
101 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
102 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
103 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
104 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
105 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
106 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
107 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
108 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
109 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
110 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
111 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
112 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
113 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
114 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
115 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
116 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
117 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
118 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
119 3300013249 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.3_F06 Metagenome Rhizosphere
120 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
121 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
122 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
123 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
124 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
125 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
126 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
127 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
128 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
129 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
130 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
131 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
132 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
133 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
134 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
135 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
136 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
137 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
138 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
139 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
140 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
141 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
142 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
143 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
144 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
145 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
146 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
147 3300041503 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_8 MetaG Metagenome Unclassified
148 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
149 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
150 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
151 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
152 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
153 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
154 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
155 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
156 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
157 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
158 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
159 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
160 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
161 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
162 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
163 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
164 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
165 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
166 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
167 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
168 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
169 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
170 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
171 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
172 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
173 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
174 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
175 649633066 Mesorhizobium ciceri bv. biserrulae WSM1271 Isolate Nodule
176 650716007 Agrobacterium fabacearum H13-3 Isolate Rhizosphere
177 8003570095 Agrobacterium rhizogenes GBBC3284 Isolate Unclassified
178 8004300914 Mesorhizobium sp. M7A.F.Ca.CA.002.07.1.1 Isolate Nodule
179 8005246636 Rhizobium wuzhouense W44 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 48.15
Metatranscriptomes 0
Isolates 51.85

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.05
Nodule 28.57
Rhizoplane 2.65
Rhizosphere 24.87
Stem 0
Stem Tuber 0
Unclassified 24.87

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25159J45721_1002438 3300002987 Bacteria 7070
2 JGI25151J46595_10002810 3300003187 Bacteria 10060
3 JGI25165J46597_1000254 3300003214 Bacteria 71635
4 JGI25160J50197_1003454 3300003354 Bacteria 7070
5 JGI25161J50226_1002515 3300003374 Bacteria 4652
6 Ga0055526_1007572 3300003771 Bacteria 5608
7 Ga0055524_1003052 3300003775 Bacteria 8289
8 Ga0055536_1002572 3300003781 Bacteria 10107
9 Ga0055531_10005399 3300003794 Bacteria 7490
10 Ga0055543_1002080 3300004625 Bacteria 6976
11 Ga0065165_1005475 3300005262 Bacteria 7108
12 Ga0068853_100047484 3300005539 Bacteria 3684
13 Ga0070665_100009802 3300005548 Bacteria 9686
14 Ga0070665_100060561 3300005548 Bacteria 3795
15 Ga0068855_100267286 3300005563 Bacteria 1903
16 Ga0068857_100231801 3300005577 Bacteria 1689
17 Ga0075432_10002331 3300006058 Bacteria 6322
18 Ga0075362_10021110 3300006177 Bacteria 2728
19 Ga0105240_10140765 3300009093 Bacteria 2885
20 Ga0105243_10025350 3300009148 Bacteria 4530
21 Ga0105237_10090575 3300009545 Bacteria 3047
22 Ga0105239_10011913 3300010375 Bacteria 9701
23 Ga0105239_10125926 3300010375 Bacteria 2847
24 Ga0105246_10204186 3300011119 Bacteria 1538
25 Ga0157373_10020561 3300013100 Bacteria 4796
26 Ga0157371_10000205 3300013102 Bacteria 86623
27 Ga0157370_10089671 3300013104 Bacteria 2888
28 Ga0171463_1012 3300013249 Bacteria 176554
29 Ga0182008_10008602 3300014497 Bacteria 5561
30 Ga0182006_1025766 3300015261 Bacteria 2413
31 Ga0209436_102708 3300025208 Bacteria 5122
32 Ga0209233_1000028 3300025261 Bacteria 642062
33 Ga0209130_1000242 3300025284 Bacteria 69580
34 Ga0209676_1005089 3300025292 Bacteria 7019
35 Ga0209025_1002213 3300025294 Bacteria 21457
36 Ga0209025_1030271 3300025294 Bacteria 2595
37 Ga0209564_1000117 3300025295 Bacteria 207096
38 Ga0209050_1002771 3300025298 Bacteria 14067
39 Ga0209256_1003289 3300025299 Bacteria 11527
40 Ga0209256_1005004 3300025299 Bacteria 7922
41 Ga0207426_1003360 3300025302 Bacteria 8784
42 Ga0209051_1009232 3300025303 Bacteria 5104
43 Ga0209257_1002235 3300025304 Bacteria 19878
44 Ga0207671_10053798 3300025914 Bacteria 2983
45 Ga0207709_10015330 3300025935 Bacteria 4250
46 Ga0268266_10026574 3300028379 Bacteria 4926
47 Ga0268266_10036139 3300028379 Bacteria 4203
48 Ga0307515_10000068 3300028794 Bacteria 242305
49 Ga0307515_10089616 3300028794 Bacteria 3870
50 Ga0307513_10007057 3300031456 Bacteria 14604
51 Ga0307408_100102107 3300031548 Bacteria 2187
52 Ga0307510_10120905 3300033180 Bacteria 2324
53 Ga0395900_0007844 3300037418 Bacteria 11004
54 Ga0395898_0185798 3300037466 Bacteria 1986
55 Ga0395905_0071962 3300037471 Bacteria 3241
56 Ga0395901_0008486 3300038443 Bacteria 10384
57 Ga0451833_0339001 3300041491 Bacteria 14396
58 Ga0451839_0731668 3300041496 Bacteria 10168
59 Ga0451841_0586496 3300041498 Bacteria 13968
60 Ga0451847_0264828 3300041503 Bacteria 5148
61 Ga0451849_1378462 3300041505 Bacteria 6253
62 Ga0451851_0488019 3300041507 Bacteria 8129
63 Ga0451843_0128525 3300041509 Bacteria 18171
64 Ga0451576_0013779 3300045051 Bacteria 9034
65 Ga0451576_0071941 3300045051 Bacteria 3598
66 Ga0495610_0047205 3300046512 Bacteria 2120
67 Ga0495625_0015051 3300046660 Bacteria 6143
68 Ga0495625_0066631 3300046660 Bacteria 2536
69 Ga0496113_0140143 3300048916 Bacteria 1902
70 Ga0496117_0000002 3300048920 Bacteria 2483758
71 Ga0496118_0000501 3300048921 Bacteria 64803
72 Ga0496119_0034091 3300048922 Bacteria 3361
73 Ga0496120_0000093 3300048923 Bacteria 146905
74 Ga0496122_0000004 3300048925 Bacteria 645283
75 Ga0496123_0000007 3300048926 Bacteria 645283
76 Ga0496124_0023305 3300048927 Bacteria 5653
77 Ga0496126_0000243 3300048929 Bacteria 117685
78 Ga0496126_0100515 3300048929 Bacteria 2531
79 Ga0496126_0122240 3300048929 Bacteria 2256
80 Ga0501073_0002822 3300049589 Bacteria 13009
81 nmdc:mga03683_12460_c1 3300050489 Bacteria 3107
82 nmdc:mga00v17_1745_c1 3300050491 Bacteria 11304
83 nmdc:mga0yw44_17660_c1 3300050492 Bacteria 3888
84 nmdc:mga04h51_17214_c1 3300050495 Bacteria 2111
85 nmdc:mga0sz30_193_c1 3300050516 Bacteria 22669
86 Ga0500560_000177 3300053107 Bacteria 7435
87 Ga0500572_004811 3300053111 Bacteria 3060
88 Ga0500561_0000226 3300053137 Bacteria 10199
89 Ga0500604_0031719 3300053151 Bacteria 1553
90 Ga0500627_0008358 3300053158 Bacteria 3671
91 Ga0500636_0037218 3300053177 Bacteria 2879

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300033180 Ga0307510_10120905 Ga0307510_101209052 441
2 3300045051 Ga0451576_0071941 Ga0451576_0071941_584_2023 445
3 3300003214 JGI25165J46597_1000254 JGI25165J46597_100025461 447
4 3300025261 Ga0209233_1000028 Ga0209233_1000028607 447
5 3300041491 Ga0451833_0339001 Ga0451833_0339001_2998_4419 447
6 3300041496 Ga0451839_0731668 Ga0451839_0731668_1425_2846 447
7 3300041498 Ga0451841_0586496 Ga0451841_0586496_4596_6017 447
8 3300041503 Ga0451847_0264828 Ga0451847_0264828_2929_4350 447
9 3300041505 Ga0451849_1378462 Ga0451849_1378462_1541_2962 447
10 3300041507 Ga0451851_0488019 Ga0451851_0488019_3080_4501 447
11 3300041509 Ga0451843_0128525 Ga0451843_0128525_5294_6715 447
12 3300028794 Ga0307515_10000068 Ga0307515_1000006865 451
13 3300005577 Ga0068857_100231801 Ga0068857_1002318011 452
14 iso_pu_bacteria 2511231027 2511390420 452
15 iso_pu_bacteria 2842871566 2842875952 452
16 iso_pu_bacteria 2928521798 2928525821 452
17 iso_pu_bacteria 2954011201 2954012090 452
18 3300046660 Ga0495625_0015051 Ga0495625_0015051_3301_4827 455
19 3300053158 Ga0500627_0008358 Ga0500627_0008358_1558_3084 455
20 iso_pu_bacteria 2693429783 2694631465 455
21 iso_pu_bacteria 2693429784 2694640143 455
22 3300011119 Ga0105246_10204186 Ga0105246_102041861 456
23 iso_pu_bacteria 2599185156 2599334891 456
24 iso_pu_bacteria 2606217733 2608380280 456
25 iso_pu_bacteria 2767802442 2770195837 456
26 iso_pu_bacteria 2840764183 2840770166 456
27 iso_pu_bacteria 2842922631 2842926071 456
28 iso_pu_bacteria 2894652903 2894656690 456
29 3300025294 Ga0209025_1030271 Ga0209025_10302712 457
30 3300045051 Ga0451576_0013779 Ga0451576_0013779_7006_8385 458
31 iso_pu_bacteria 2924762789 2924769091 458
32 iso_pu_bacteria 3005409236 3005412291 458
33 iso_pu_bacteria 650716007 650741004 458
34 3300037466 Ga0395898_0185798 Ga0395898_0185798_117_1604 460
35 3300037471 Ga0395905_0071962 Ga0395905_0071962_545_2032 460
36 iso_pu_bacteria 8005246636 8005248294 461
37 3300006058 Ga0075432_10002331 Ga0075432_100023315 463
38 3300046660 Ga0495625_0066631 Ga0495625_0066631_1076_2470 463
39 3300005539 Ga0068853_100047484 Ga0068853_1000474843 464
40 3300005548 Ga0070665_100060561 Ga0070665_1000605612 464
41 3300009545 Ga0105237_10090575 Ga0105237_100905753 464
42 3300010375 Ga0105239_10125926 Ga0105239_101259263 464
43 3300025914 Ga0207671_10053798 Ga0207671_100537983 464
44 3300028379 Ga0268266_10036139 Ga0268266_100361394 464
45 3300028794 Ga0307515_10089616 Ga0307515_100896163 464
46 3300048929 Ga0496126_0100515 Ga0496126_0100515_927_2381 464
47 3300005548 Ga0070665_100009802 Ga0070665_1000098022 465
48 3300006177 Ga0075362_10021110 Ga0075362_100211102 465
49 3300009148 Ga0105243_10025350 Ga0105243_100253505 465
50 3300013100 Ga0157373_10020561 Ga0157373_100205612 465
51 3300013102 Ga0157371_10000205 Ga0157371_1000020573 465
52 3300013104 Ga0157370_10089671 Ga0157370_100896712 465
53 3300025935 Ga0207709_10015330 Ga0207709_100153303 465
54 3300028379 Ga0268266_10026574 Ga0268266_100265745 465
55 3300031456 Ga0307513_10007057 Ga0307513_100070573 465
56 3300031548 Ga0307408_100102107 Ga0307408_1001021072 465
57 3300037418 Ga0395900_0007844 Ga0395900_0007844_5521_7008 465
58 3300038443 Ga0395901_0008486 Ga0395901_0008486_885_2372 465
59 3300048916 Ga0496113_0140143 Ga0496113_0140143_407_1828 465
60 3300048920 Ga0496117_0000002 Ga0496117_0000002_3242_4663 465
61 3300048921 Ga0496118_0000501 Ga0496118_0000501_2884_4305 465
62 3300048922 Ga0496119_0034091 Ga0496119_0034091_1904_3325 465
63 3300048923 Ga0496120_0000093 Ga0496120_0000093_142555_143976 465
64 3300048925 Ga0496122_0000004 Ga0496122_0000004_641013_642434 465
65 3300048926 Ga0496123_0000007 Ga0496123_0000007_641013_642434 465
66 3300048927 Ga0496124_0023305 Ga0496124_0023305_3390_4811 465
67 3300048929 Ga0496126_0000243 Ga0496126_0000243_106228_107628 465
68 3300048929 Ga0496126_0122240 Ga0496126_0122240_793_2214 465
69 3300050489 nmdc:mga03683_12460_c1 nmdc:mga03683_12460_c1_316_1737 465
70 3300050491 nmdc:mga00v17_1745_c1 nmdc:mga00v17_1745_c1_2928_4349 465
71 3300050495 nmdc:mga04h51_17214_c1 nmdc:mga04h51_17214_c1_45_1466 465
72 3300050516 nmdc:mga0sz30_193_c1 nmdc:mga0sz30_193_c1_18316_19737 465
73 3300053107 Ga0500560_000177 Ga0500560_000177_5261_6682 465
74 3300053111 Ga0500572_004811 Ga0500572_004811_910_2316 465
75 3300053137 Ga0500561_0000226 Ga0500561_0000226_5525_6946 465
76 3300053151 Ga0500604_0031719 Ga0500604_0031719_30_1451 465
77 3300053177 Ga0500636_0037218 Ga0500636_0037218_641_2062 465
78 iso_pu_bacteria 2515154114 2515645142 465
79 iso_pu_bacteria 2534681796 2535518655 465
80 iso_pu_bacteria 2554235003 2554248705 465
81 iso_pu_bacteria 2558860242 2559295793 465
82 iso_pu_bacteria 2582581866 2585393711 465
83 iso_pu_bacteria 2617270742 2617385240 465
84 iso_pu_bacteria 2643221618 2644106775 465
85 iso_pu_bacteria 2643221626 2644149284 465
86 iso_pu_bacteria 2643221655 2644309847 465
87 iso_pu_bacteria 2643221659 2644337128 465
88 iso_pu_bacteria 2643221693 2644523240 465
89 iso_pu_bacteria 2643221712 2644616298 465
90 iso_pu_bacteria 2724679232 2725946960 465
91 iso_pu_bacteria 2808606387 2808987473 465
92 iso_pu_bacteria 2842395702 2842396909 465
93 iso_pu_bacteria 2844163670 2844168632 465
94 iso_pu_bacteria 2899845264 2899848987 465
95 iso_pu_bacteria 2926760298 2926762356 465
96 iso_pu_bacteria 2937848649 2937848785 465
97 iso_pu_bacteria 2977922695 2977928365 465
98 iso_pu_bacteria 2979089926 2979092374 465
99 iso_pu_bacteria 2979095461 2979100236 465
100 iso_pu_bacteria 2987666974 2987672943 465
101 iso_pu_bacteria 3004211236 3004215628 465
102 iso_pu_bacteria 3004218560 3004222068 465
103 iso_pu_bacteria 8003570095 8003574202 465
104 3300003775 Ga0055524_1003052 Ga0055524_10030527 467
105 3300025299 Ga0209256_1003289 Ga0209256_10032892 467
106 3300049589 Ga0501073_0002822 Ga0501073_0002822_877_2292 467
107 iso_pu_bacteria 2643221550 2643772214 467
108 iso_pu_bacteria 2851182111 2851185377 468
109 3300005563 Ga0068855_100267286 Ga0068855_1002672862 469
110 3300009093 Ga0105240_10140765 Ga0105240_101407652 469
111 3300010375 Ga0105239_10011913 Ga0105239_100119132 469
112 3300013249 Ga0171463_1012 Ga0171463_1012103 469
113 3300014497 Ga0182008_10008602 Ga0182008_100086025 469
114 3300015261 Ga0182006_1025766 Ga0182006_10257663 469
115 3300046512 Ga0495610_0047205 Ga0495610_0047205_219_1715 469
116 iso_pu_bacteria 2869278585 2869282063 469
117 iso_pu_bacteria 2909042592 2909043759 469
118 iso_pu_bacteria 2958034702 2958037858 469
119 iso_pu_bacteria 2958041894 2958048797 469
120 iso_pu_bacteria 2970593180 2970596666 469
121 iso_pu_bacteria 3000135777 3000136941 469
122 iso_pu_bacteria 3004334049 3004338552 469
123 iso_pu_bacteria 2838042994 2838044510 474
124 iso_pu_bacteria 2965110997 2965111144 474
125 iso_pu_bacteria 2937877337 2937878900 475
126 iso_pu_bacteria 2958084443 2958087360 475
127 3300050492 nmdc:mga0yw44_17660_c1 nmdc:mga0yw44_17660_c1_1229_2755 476
128 iso_pu_bacteria 2856320880 2856324021 476
129 iso_pu_bacteria 2856334872 2856338027 476
130 iso_pu_bacteria 2857367948 2857372440 476
131 iso_pu_bacteria 2869271264 2869276116 476
132 iso_pu_bacteria 2874139085 2874144832 476
133 iso_pu_bacteria 2874162495 2874165018 476
134 iso_pu_bacteria 2876399893 2876405042 476
135 iso_pu_bacteria 2878738818 2878739766 476
136 iso_pu_bacteria 2878774303 2878777981 476
137 iso_pu_bacteria 2888337043 2888342246 476
138 iso_pu_bacteria 2906408224 2906411173 476
139 iso_pu_bacteria 2922172374 2922178477 476
140 iso_pu_bacteria 2924718760 2924722290 476
141 iso_pu_bacteria 2924733363 2924733377 476
142 iso_pu_bacteria 2924748358 2924750788 476
143 iso_pu_bacteria 2924776078 2924777384 476
144 iso_pu_bacteria 2937972304 2937975898 476
145 iso_pu_bacteria 2958064165 2958068468 476
146 iso_pu_bacteria 2958092219 2958096608 476
147 iso_pu_bacteria 2958122699 2958128735 476
148 iso_pu_bacteria 2958137437 2958141278 476
149 iso_pu_bacteria 2958144490 2958150044 476
150 iso_pu_bacteria 2961136820 2961137583 476
151 iso_pu_bacteria 2965025482 2965025928 476
152 iso_pu_bacteria 2965047637 2965054683 476
153 iso_pu_bacteria 2968016561 2968021777 476
154 iso_pu_bacteria 2970469710 2970474367 476
155 iso_pu_bacteria 2970489779 2970492206 476
156 iso_pu_bacteria 2970547951 2970551622 476
157 iso_pu_bacteria 2977872689 2977873240 476
158 iso_pu_bacteria 2977935797 2977942019 476
159 iso_pu_bacteria 2977957713 2977961831 476
160 iso_pu_bacteria 2979793036 2979799067 476
161 iso_pu_bacteria 2987645492 2987647712 476
162 iso_pu_bacteria 2987673487 2987677033 476
163 iso_pu_bacteria 2996348954 2996353777 476
164 iso_pu_bacteria 3004239961 3004246639 476
165 iso_pu_bacteria 3004275668 3004280445 476
166 iso_pu_bacteria 3004289098 3004295022 476
167 iso_pu_bacteria 649633066 649872462 476
168 iso_pu_bacteria 8004300914 8004307243 476
169 iso_pu_bacteria 2599185352 2600197900 478
170 iso_pu_bacteria 2643221723 2644675298 478
171 3300002987 JGI25159J45721_1002438 JGI25159J45721_10024382 482
172 3300003187 JGI25151J46595_10002810 JGI25151J46595_100028103 482
173 3300003354 JGI25160J50197_1003454 JGI25160J50197_10034542 482
174 3300003374 JGI25161J50226_1002515 JGI25161J50226_10025152 482
175 3300003771 Ga0055526_1007572 Ga0055526_10075725 482
176 3300003781 Ga0055536_1002572 Ga0055536_100257210 482
177 3300003794 Ga0055531_10005399 Ga0055531_100053992 482
178 3300004625 Ga0055543_1002080 Ga0055543_10020802 482
179 3300005262 Ga0065165_1005475 Ga0065165_10054752 482
180 3300025208 Ga0209436_102708 Ga0209436_1027085 482
181 3300025284 Ga0209130_1000242 Ga0209130_10002428 482
182 3300025292 Ga0209676_1005089 Ga0209676_10050897 482
183 3300025294 Ga0209025_1002213 Ga0209025_10022133 482
184 3300025295 Ga0209564_1000117 Ga0209564_100011726 482
185 3300025298 Ga0209050_1002771 Ga0209050_10027719 482
186 3300025299 Ga0209256_1005004 Ga0209256_10050048 482
187 3300025302 Ga0207426_1003360 Ga0207426_10033603 482
188 3300025303 Ga0209051_1009232 Ga0209051_10092323 482
189 3300025304 Ga0209257_1002235 Ga0209257_10022359 482

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01565

FAD_binding_4

FAD binding domain

105

243

0.98

PF02913

FAD-oxidase_C

FAD linked oxidases, C-terminal domain

280

526

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
3pm9-assembly1.cif.gz_A crystal structure of a putative dehydrogenase (rpa1076) from rhodopseudomonas palustris cga009 at 2.57 a resolution 0.9108 4 464
3pm9-assembly1.cif.gz_A crystal structure of a putative dehydrogenase (rpa1076) from rhodopseudomonas palustris cga009 at 2.57 a resolution 0.9014 4 464
6lpq-assembly1.cif.gz_A crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-malate (d-mal) 0.8945 1 466
7qh2-assembly1.cif.gz_F cryo-em structure of ldh-etfab complex from acetobacterium woodii 0.883 4 467
6lpq-assembly1.cif.gz_A crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-malate (d-mal) 0.8817 1 466
ID Description Score Start End Superfamily
af_K7K4A7_263_384_3.30.465.10 Alpha Beta;2-Layer Sandwich;Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3; 0.9813 95 216 3.30.465.10
3pm9F02 Alpha Beta;2-Layer Sandwich;Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3; 0.9772 95 216 3.30.465.10
af_Q4D224_129_228_3.30.465.10 Alpha Beta;2-Layer Sandwich;Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3; 0.9742 99 197 3.30.465.10
af_K7K4A7_263_384_3.30.465.10 Alpha Beta;2-Layer Sandwich;Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3; 0.9734 95 216 3.30.465.10
3pm9F02 Alpha Beta;2-Layer Sandwich;Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3; 0.9693 95 216 3.30.465.10
ID Description Score Start End GO Terms
AF-A0A4P7R8K1-F1-model_v4 FAD-binding oxidoreductase 0.9867 7 467 GO:0003824
GO:0022904
GO:0071949
AF-A0A4P7R8K1-F1-model_v4 FAD-binding oxidoreductase 0.9783 7 467 GO:0003824
GO:0022904
GO:0071949
AF-A0A0S7K9L2-F1-model_v4 deleted 0.9664 44 216
AF-A0A421BJ33-F1-model_v4 FAD-binding oxidoreductase 0.9655 7 467 GO:0003824
GO:0022904
GO:0071949
AF-A0A2W5RC30-F1-model_v4 deleted 0.9576 44 242

Feature Viewer

pLDDT pTM Quality
89.17 0.88 High
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Predicted Structure (AlphaFold2)

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