F291206

General Info

Members Datasets Scaffolds Average Seq Length
189 84 189 245

Family's Representative Sequence

Representative Sequence 3300032133|Ga0316583_10027046|Ga0316583_100270463
Length 268
Sequence MASNSIVYGPGPAFPPSETARETNRESAMRQIVLDTETTGLDPGEGHRIIEIGCVEVADRRLTRNNFHQYLQPDREIDQGAAEVHGITNELLRDKPRFADIADDFIRYVKGAELIIHNAPFDVGFLDCELARCEGTTARIADLCVVTDTLVMARSLHPGQRNTLDALCKRYGVDNSQRDLHGALLDAEILADVYLAMTGGQVSLSLASRREAGRTPDRGGIRRLPADRPRLRVIRAADQELGAHQARLRAIEQASGGTCIWLQTGSEA

Samples

Sample ID Description Type Environment
1 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
2 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
5 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
6 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
7 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
8 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
9 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
10 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
11 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
12 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
13 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
14 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
15 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
16 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
17 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
18 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
19 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
20 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
21 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
22 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
35 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
36 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
37 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
38 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
39 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
40 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
41 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
42 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
43 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
44 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
45 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
46 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
47 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
48 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
49 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
50 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
51 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
52 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
53 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
54 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
55 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
56 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
57 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
58 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
59 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
60 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
61 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
62 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
63 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
64 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
65 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
66 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
67 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
68 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
69 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
70 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
71 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
72 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
73 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
74 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
75 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
76 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
77 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
81 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
82 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
83 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
84 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.48
Metatranscriptomes 9.52
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.59
Nodule 0
Rhizoplane 1.59
Rhizosphere 80.95
Stem 0
Stem Tuber 0
Unclassified 15.87

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070683_100061809 3300005329 Bacteria 3482
2 Ga0070666_10124259 3300005335 Bacteria 1790
3 Ga0070680_100002512 3300005336 Bacteria 13592
4 Ga0070667_100092115 3300005367 Bacteria 2607
5 Ga0070713_100597863 3300005436 Bacteria 1048
6 Ga0070681_10349199 3300005458 Bacteria 1389
7 Ga0070679_100077779 3300005530 Bacteria 3307
8 Ga0070679_100174817 3300005530 Bacteria 2120
9 Ga0070665_100231251 3300005548 Bacteria 1849
10 Ga0070665_100285163 3300005548 Bacteria 1653
11 Ga0068855_100297218 3300005563 Bacteria 1789
12 Ga0068852_100588972 3300005616 Bacteria 1116
13 Ga0068860_100191301 3300005843 Bacteria 1980
14 Ga0068860_100274420 3300005843 Bacteria 1646
15 Ga0105240_10017945 3300009093 Bacteria 9517
16 Ga0105237_10035860 3300009545 Bacteria 5017
17 Ga0105237_10038375 3300009545 Bacteria 4836
18 Ga0105249_10008436 3300009553 Bacteria 8976
19 Ga0157370_10262534 3300013104 Bacteria 1596
20 Ga0157369_10962689 3300013105 Bacteria 874
21 Ga0157372_10294480 3300013307 Bacteria 1887
22 Ga0163163_10587354 3300014325 Bacteria 1177
23 Ga0157380_10821894 3300014326 Bacteria 948
24 Ga0157379_10134162 3300014968 Bacteria 2230
25 Ga0157379_10169833 3300014968 Bacteria 1969
26 Ga0157376_10578549 3300014969 Bacteria 1115
27 Ga0207695_10026081 3300025913 Bacteria 6528
28 Ga0207695_10052464 3300025913 Bacteria 4272
29 Ga0207695_10076739 3300025913 Bacteria 3396
30 Ga0207695_10456768 3300025913 Bacteria 1160
31 Ga0207671_10147801 3300025914 Bacteria 1814
32 Ga0207671_10311111 3300025914 Bacteria 1245
33 Ga0207652_10058476 3300025921 Bacteria 3322
34 Ga0207652_10141415 3300025921 Bacteria 2152
35 Ga0207644_10001632 3300025931 Bacteria 14446
36 Ga0207661_10013656 3300025944 Bacteria 5930
37 Ga0207667_10311889 3300025949 Bacteria 1607
38 Ga0207712_10023948 3300025961 Bacteria 4035
39 Ga0207658_10262896 3300025986 Bacteria 1471
40 Ga0207641_10592436 3300026088 Bacteria 1085
41 Ga0207648_10300387 3300026089 Bacteria 1440
42 Ga0268266_10106591 3300028379 Bacteria 2477
43 Ga0268266_10724071 3300028379 Bacteria 959
44 Ga0268264_10147211 3300028381 Bacteria 2107
45 Ga0268264_10290322 3300028381 Bacteria 1536
46 Ga0265334_10011087 3300028573 Bacteria 3799
47 Ga0265334_10064676 3300028573 Bacteria 1373
48 Ga0265331_10003317 3300031250 Bacteria 10459
49 Ga0265331_10037867 3300031250 Bacteria 2360
50 Ga0265327_10000214 3300031251 Bacteria 120181
51 Ga0265327_10021276 3300031251 Bacteria 3918
52 Ga0307513_10267737 3300031456 Bacteria 1494
53 Ga0316575_10071073 3300031665 Bacteria 1398
54 Ga0316575_10102050 3300031665 Bacteria 1167
55 Ga0316579_10002696 3300031691 Bacteria 6754
56 Ga0316579_10004449 3300031691 Bacteria 5563
57 Ga0316579_10010772 3300031691 Bacteria 3872
58 Ga0316579_10057351 3300031691 Bacteria 1829
59 Ga0316579_10084604 3300031691 Bacteria 1513
60 Ga0316579_10128256 3300031691 Bacteria 1221
61 Ga0316576_10001053 3300031727 Bacteria 14312
62 Ga0316576_10001586 3300031727 Bacteria 12375
63 Ga0316576_10004188 3300031727 Bacteria 8612
64 Ga0316576_10005561 3300031727 Bacteria 7717
65 Ga0316576_10005824 3300031727 Bacteria 7600
66 Ga0316576_10097232 3300031727 Bacteria 2198
67 Ga0316576_10223142 3300031727 Bacteria 1417
68 Ga0316576_10287877 3300031727 Bacteria 1229
69 Ga0316578_10000289 3300031728 Bacteria 15279
70 Ga0316578_10002568 3300031728 Bacteria 8027
71 Ga0316578_10003317 3300031728 Bacteria 7334
72 Ga0316578_10004424 3300031728 Bacteria 6635
73 Ga0316578_10014396 3300031728 Bacteria 4225
74 Ga0316578_10016563 3300031728 Bacteria 3992
75 Ga0316578_10034408 3300031728 Bacteria 2909
76 Ga0316578_10051417 3300031728 Bacteria 2413
77 Ga0316578_10100628 3300031728 Bacteria 1732
78 Ga0316578_10236744 3300031728 Bacteria 1096
79 Ga0316578_10366713 3300031728 Bacteria 856
80 Ga0307405_10079966 3300031731 Bacteria 2133
81 Ga0316577_10003299 3300031733 Bacteria 8132
82 Ga0316577_10007188 3300031733 Bacteria 5925
83 Ga0316577_10028183 3300031733 Bacteria 3132
84 Ga0316577_10038207 3300031733 Bacteria 2684
85 Ga0307409_100118658 3300031995 Bacteria 2235
86 Ga0316583_10012906 3300032133 Bacteria 3013
87 Ga0316583_10022241 3300032133 Bacteria 2271
88 Ga0316583_10027046 3300032133 Bacteria 2048
89 Ga0316585_10003070 3300032137 Bacteria 4556
90 Ga0316585_10006149 3300032137 Bacteria 3423
91 Ga0316585_10051575 3300032137 Bacteria 1321
92 Ga0316580_10000338 3300032139 Bacteria 10298
93 Ga0316580_10005337 3300032139 Bacteria 3747
94 Ga0316580_10028206 3300032139 Bacteria 1735
95 Ga0316593_10006103 3300032168 Bacteria 3233
96 Ga0316593_10010235 3300032168 Bacteria 2682
97 Ga0316593_10010326 3300032168 Bacteria 2673
98 Ga0316593_10026679 3300032168 Bacteria 1848
99 Ga0307510_10000007 3300033180 Bacteria 558582
100 Ga0316592_1002861 3300033524 Bacteria 3037
101 Ga0316592_1003707 3300033524 Bacteria 2781
102 Ga0316592_1005522 3300033524 Bacteria 2405
103 Ga0316592_1017922 3300033524 Bacteria 1489
104 Ga0316588_1000132 3300033528 Bacteria 7724
105 Ga0316588_1001676 3300033528 Bacteria 3704
106 Ga0316588_1024052 3300033528 Bacteria 1400
107 Ga0316587_1000128 3300033529 Bacteria 5824
108 Ga0316587_1030879 3300033529 Bacteria 946
109 Ga0316596_1003088 3300033541 Bacteria 3620
110 Ga0316596_1004100 3300033541 Bacteria 3238
111 Ga0316596_1009380 3300033541 Bacteria 2348
112 Ga0316596_1010076 3300033541 Bacteria 2280
113 Ga0316596_1010676 3300033541 Bacteria 2230
114 Ga0316574_0000325 3300035398 Bacteria 18288
115 Ga0316574_0000838 3300035398 Bacteria 13430
116 Ga0316574_0001509 3300035398 Bacteria 11092
117 Ga0316574_0004718 3300035398 Bacteria 7191
118 Ga0316574_0011916 3300035398 Bacteria 4957
119 Ga0316574_0013939 3300035398 Bacteria 4633
120 Ga0316574_0034732 3300035398 Bacteria 3076
121 Ga0316574_0037813 3300035398 Bacteria 2961
122 Ga0316574_0050941 3300035398 Bacteria 2579
123 Ga0316574_0063809 3300035398 Bacteria 2317
124 Ga0316574_0115626 3300035398 Bacteria 1720
125 Ga0316574_0137435 3300035398 Bacteria 1574
126 Ga0316574_0311018 3300035398 Bacteria 1001
127 Ga0316582_0005079 3300036647 Bacteria 6731
128 Ga0316582_0031776 3300036647 Bacteria 3230
129 Ga0316582_0041223 3300036647 Bacteria 2884
130 Ga0316582_0070205 3300036647 Bacteria 2266
131 Ga0316582_0075389 3300036647 Bacteria 2191
132 Ga0316582_0211281 3300036647 Bacteria 1326
133 Ga0316584_0000917 3300036712 Bacteria 16795
134 Ga0316584_0001823 3300036712 Bacteria 13173
135 Ga0316584_0003101 3300036712 Bacteria 10726
136 Ga0316584_0026236 3300036712 Bacteria 4281
137 Ga0316584_0039473 3300036712 Bacteria 3514
138 Ga0316584_0045664 3300036712 Bacteria 3270
139 Ga0316584_0056506 3300036712 Bacteria 2938
140 Ga0316584_0076411 3300036712 Bacteria 2510
141 Ga0316584_0093464 3300036712 Bacteria 2252
142 Ga0316584_0109565 3300036712 Bacteria 2066
143 Ga0316584_0157107 3300036712 Bacteria 1691
144 Ga0316581_0003915 3300037588 Bacteria 3753
145 Ga0400490_50161 3300038726 Bacteria 1168
146 Ga0400483_045121 3300039062 Unclassified 1216
147 Ga0400483_048790 3300039062 Bacteria 2753
148 Ga0400483_049829 3300039062 Bacteria 2345
149 Ga0400483_050903 3300039062 Bacteria 24509
150 Ga0400483_077040 3300039062 Bacteria 2871
151 Ga0400483_183781 3300039062 Bacteria 2145
152 Ga0400483_187531 3300039062 Bacteria 1009
153 Ga0400483_211912 3300039062 Bacteria 25918
154 Ga0400483_229068 3300039062 Unclassified 1833
155 Ga0451793_0926207 3300041452 Bacteria 954
156 Ga0466969_0009737 3300044656 Bacteria 5094
157 Ga0466959_0016173 3300045049 Bacteria 5447
158 Ga0466959_0045652 3300045049 Bacteria 3227
159 Ga0495606_0320323 3300046507 Bacteria 833
160 Ga0495625_0044496 3300046660 Bacteria 3214
161 Ga0495649_0004534 3300046694 Bacteria 9068
162 Ga0496102_0009318 3300048905 Bacteria 8431
163 Ga0496112_0089190 3300048915 Bacteria 3052
164 Ga0496116_0007473 3300048919 Bacteria 9681
165 Ga0496117_0000209 3300048920 Bacteria 113908
166 Ga0496118_0000019 3300048921 Bacteria 489649
167 Ga0496119_0000413 3300048922 Bacteria 58691
168 Ga0496119_0000609 3300048922 Bacteria 48363
169 Ga0496119_0011523 3300048922 Bacteria 7306
170 Ga0496120_0000649 3300048923 Bacteria 51212
171 Ga0496120_0009821 3300048923 Bacteria 6742
172 Ga0496120_0012032 3300048923 Bacteria 5912
173 Ga0496121_0038803 3300048924 Bacteria 4209
174 Ga0496124_0023711 3300048927 Bacteria 5595
175 Ga0496124_0024747 3300048927 Bacteria 5452
176 Ga0496124_0333885 3300048927 Bacteria 1080
177 Ga0496125_0005268 3300048928 Bacteria 14480
178 Ga0496126_0003870 3300048929 Bacteria 18453
179 Ga0496126_0008429 3300048929 Bacteria 11116
180 Ga0496126_0197514 3300048929 Bacteria 1700
181 Ga0496126_0318579 3300048929 Bacteria 1279
182 Ga0501037_0008912 3300049573 Bacteria 7347
183 Ga0501042_0109716 3300049578 Bacteria 1987
184 Ga0501046_0044360 3300049580 Bacteria 3536
185 Ga0501070_0047625 3300049586 Bacteria 3562
186 Ga0501075_0050333 3300049591 Bacteria 3132
187 Ga0500619_062715 3300053154 Bacteria 1226
188 Ga0500622_0015558 3300053156 Bacteria 4072
189 Ga0500661_009852 3300055283 Bacteria 1743

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300039062 Ga0400483_187531 Ga0400483_187531_42_758 220
2 3300031727 Ga0316576_10004188 Ga0316576_100041887 224
3 3300035398 Ga0316574_0004718 Ga0316574_0004718_864_1586 224
4 3300036712 Ga0316584_0056506 Ga0316584_0056506_1380_2102 224
5 3300036712 Ga0316584_0045664 Ga0316584_0045664_1305_2021 228
6 3300053154 Ga0500619_062715 Ga0500619_062715_488_1186 231
7 3300031995 Ga0307409_100118658 Ga0307409_1001186582 233
8 3300046507 Ga0495606_0320323 Ga0495606_0320323_30_743 233
9 3300031251 Ga0265327_10021276 Ga0265327_100212762 235
10 3300031727 Ga0316576_10005561 Ga0316576_100055616 235
11 3300031728 Ga0316578_10016563 Ga0316578_100165634 235
12 3300033528 Ga0316588_1024052 Ga0316588_10240521 235
13 3300036647 Ga0316582_0211281 Ga0316582_0211281_196_912 235
14 3300036712 Ga0316584_0039473 Ga0316584_0039473_1897_2643 235
15 3300048927 Ga0496124_0024747 Ga0496124_0024747_1237_1950 235
16 3300031250 Ga0265331_10037867 Ga0265331_100378672 236
17 3300031251 Ga0265327_10000214 Ga0265327_1000021492 236
18 3300031665 Ga0316575_10102050 Ga0316575_101020502 236
19 3300031727 Ga0316576_10005824 Ga0316576_100058245 236
20 3300031728 Ga0316578_10002568 Ga0316578_100025688 236
21 3300031728 Ga0316578_10236744 Ga0316578_102367442 236
22 3300031733 Ga0316577_10007188 Ga0316577_100071882 236
23 3300032139 Ga0316580_10028206 Ga0316580_100282061 236
24 3300035398 Ga0316574_0001509 Ga0316574_0001509_8685_9401 236
25 3300035398 Ga0316574_0037813 Ga0316574_0037813_678_1394 236
26 3300036647 Ga0316582_0031776 Ga0316582_0031776_2044_2760 236
27 3300036647 Ga0316582_0070205 Ga0316582_0070205_292_1011 236
28 3300036712 Ga0316584_0000917 Ga0316584_0000917_3503_4222 236
29 3300036712 Ga0316584_0093464 Ga0316584_0093464_1144_1860 236
30 3300036712 Ga0316584_0109565 Ga0316584_0109565_1011_1727 236
31 3300038726 Ga0400490_50161 Ga0400490_50161_152_868 236
32 3300039062 Ga0400483_045121 Ga0400483_045121_431_1147 236
33 3300039062 Ga0400483_049829 Ga0400483_049829_193_909 236
34 3300039062 Ga0400483_077040 Ga0400483_077040_1169_1885 236
35 3300039062 Ga0400483_183781 Ga0400483_183781_963_1679 236
36 3300039062 Ga0400483_229068 Ga0400483_229068_568_1284 236
37 3300046660 Ga0495625_0044496 Ga0495625_0044496_1557_2267 236
38 3300055283 Ga0500661_009852 Ga0500661_009852_582_1301 236
39 3300031691 Ga0316579_10002696 Ga0316579_100026963 237
40 3300031691 Ga0316579_10057351 Ga0316579_100573512 237
41 3300031691 Ga0316579_10084604 Ga0316579_100846042 237
42 3300031691 Ga0316579_10128256 Ga0316579_101282561 237
43 3300031728 Ga0316578_10100628 Ga0316578_101006281 237
44 3300031728 Ga0316578_10366713 Ga0316578_103667131 237
45 3300031733 Ga0316577_10038207 Ga0316577_100382072 237
46 3300032133 Ga0316583_10012906 Ga0316583_100129062 237
47 3300032139 Ga0316580_10005337 Ga0316580_100053372 237
48 3300032168 Ga0316593_10006103 Ga0316593_100061034 237
49 3300032168 Ga0316593_10010235 Ga0316593_100102353 237
50 3300033524 Ga0316592_1017922 Ga0316592_10179222 237
51 3300033528 Ga0316588_1000132 Ga0316588_10001325 237
52 3300033529 Ga0316587_1000128 Ga0316587_10001283 237
53 3300033541 Ga0316596_1010676 Ga0316596_10106762 237
54 3300035398 Ga0316574_0013939 Ga0316574_0013939_1850_2566 237
55 3300035398 Ga0316574_0115626 Ga0316574_0115626_222_938 237
56 3300036647 Ga0316582_0041223 Ga0316582_0041223_2008_2724 237
57 3300036712 Ga0316584_0076411 Ga0316584_0076411_1355_2077 237
58 3300039062 Ga0400483_048790 Ga0400483_048790_273_1001 237
59 3300031727 Ga0316576_10097232 Ga0316576_100972322 238
60 3300031728 Ga0316578_10051417 Ga0316578_100514172 238
61 3300032133 Ga0316583_10027046 Ga0316583_100270463 238
62 3300032168 Ga0316593_10026679 Ga0316593_100266792 238
63 3300033524 Ga0316592_1005522 Ga0316592_10055222 238
64 3300035398 Ga0316574_0000325 Ga0316574_0000325_3171_3935 238
65 3300035398 Ga0316574_0311018 Ga0316574_0311018_141_869 238
66 3300036712 Ga0316584_0157107 Ga0316584_0157107_404_1129 238
67 3300041452 Ga0451793_0926207 Ga0451793_0926207_108_830 238
68 3300049573 Ga0501037_0008912 Ga0501037_0008912_6307_7032 238
69 3300049580 Ga0501046_0044360 Ga0501046_0044360_1016_1741 238
70 3300049586 Ga0501070_0047625 Ga0501070_0047625_1515_2240 238
71 3300049591 Ga0501075_0050333 Ga0501075_0050333_1004_1729 238
72 3300031665 Ga0316575_10071073 Ga0316575_100710732 239
73 3300031691 Ga0316579_10004449 Ga0316579_100044493 239
74 3300031727 Ga0316576_10223142 Ga0316576_102231421 239
75 3300031728 Ga0316578_10034408 Ga0316578_100344084 239
76 3300032137 Ga0316585_10003070 Ga0316585_100030703 239
77 3300033541 Ga0316596_1009380 Ga0316596_10093802 239
78 3300035398 Ga0316574_0137435 Ga0316574_0137435_178_906 239
79 3300036647 Ga0316582_0075389 Ga0316582_0075389_1286_2014 239
80 3300036712 Ga0316584_0026236 Ga0316584_0026236_1116_1844 239
81 3300037588 Ga0316581_0003915 Ga0316581_0003915_1493_2221 239
82 3300039062 Ga0400483_050903 Ga0400483_050903_2657_3394 239
83 3300039062 Ga0400483_211912 Ga0400483_211912_24476_25213 239
84 3300046694 Ga0495649_0004534 Ga0495649_0004534_8259_8984 239
85 3300014326 Ga0157380_10821894 Ga0157380_108218942 240
86 3300031728 Ga0316578_10014396 Ga0316578_100143962 240
87 3300035398 Ga0316574_0063809 Ga0316574_0063809_78_809 240
88 3300026089 Ga0207648_10300387 Ga0207648_103003872 241
89 3300035398 Ga0316574_0034732 Ga0316574_0034732_1446_2180 241
90 3300031728 Ga0316578_10003317 Ga0316578_100033177 242
91 3300033524 Ga0316592_1003707 Ga0316592_10037073 242
92 3300033529 Ga0316587_1030879 Ga0316587_10308791 242
93 3300033541 Ga0316596_1010076 Ga0316596_10100764 242
94 3300035398 Ga0316574_0011916 Ga0316574_0011916_1347_2087 242
95 3300005843 Ga0068860_100191301 Ga0068860_1001913012 243
96 3300026088 Ga0207641_10592436 Ga0207641_105924362 243
97 3300028381 Ga0268264_10147211 Ga0268264_101472112 243
98 3300031727 Ga0316576_10001053 Ga0316576_1000105313 243
99 3300031727 Ga0316576_10287877 Ga0316576_102878772 243
100 3300031728 Ga0316578_10000289 Ga0316578_1000028911 243
101 3300031733 Ga0316577_10028183 Ga0316577_100281834 243
102 3300032137 Ga0316585_10051575 Ga0316585_100515752 243
103 3300033541 Ga0316596_1003088 Ga0316596_10030883 243
104 3300035398 Ga0316574_0050941 Ga0316574_0050941_1546_2286 243
105 3300036712 Ga0316584_0003101 Ga0316584_0003101_8504_9247 243
106 3300053156 Ga0500622_0015558 Ga0500622_0015558_18_797 243
107 3300031731 Ga0307405_10079966 Ga0307405_100799662 244
108 3300045049 Ga0466959_0045652 Ga0466959_0045652_192_953 244
109 3300005530 Ga0070679_100077779 Ga0070679_1000777793 245
110 3300025913 Ga0207695_10076739 Ga0207695_100767393 245
111 3300025921 Ga0207652_10058476 Ga0207652_100584763 245
112 3300049578 Ga0501042_0109716 Ga0501042_0109716_994_1740 246
113 3300031691 Ga0316579_10010772 Ga0316579_100107724 247
114 3300031727 Ga0316576_10001586 Ga0316576_100015869 247
115 3300031728 Ga0316578_10004424 Ga0316578_100044243 247
116 3300031733 Ga0316577_10003299 Ga0316577_100032993 247
117 3300032133 Ga0316583_10022241 Ga0316583_100222412 247
118 3300032137 Ga0316585_10006149 Ga0316585_100061493 247
119 3300032139 Ga0316580_10000338 Ga0316580_1000033811 247
120 3300032168 Ga0316593_10010326 Ga0316593_100103262 247
121 3300033180 Ga0307510_10000007 Ga0307510_10000007407 247
122 3300033524 Ga0316592_1002861 Ga0316592_10028613 247
123 3300033528 Ga0316588_1001676 Ga0316588_10016763 247
124 3300033541 Ga0316596_1004100 Ga0316596_10041003 247
125 3300035398 Ga0316574_0000838 Ga0316574_0000838_9530_10285 247
126 3300036647 Ga0316582_0005079 Ga0316582_0005079_407_1162 247
127 3300036712 Ga0316584_0001823 Ga0316584_0001823_1080_1835 247
128 3300048905 Ga0496102_0009318 Ga0496102_0009318_4836_5582 247
129 3300048919 Ga0496116_0007473 Ga0496116_0007473_1906_2652 247
130 3300048920 Ga0496117_0000209 Ga0496117_0000209_15342_16088 247
131 3300048921 Ga0496118_0000019 Ga0496118_0000019_436746_437492 247
132 3300048922 Ga0496119_0011523 Ga0496119_0011523_848_1594 247
133 3300048923 Ga0496120_0012032 Ga0496120_0012032_126_872 247
134 3300048924 Ga0496121_0038803 Ga0496121_0038803_905_1651 247
135 3300048927 Ga0496124_0023711 Ga0496124_0023711_3342_4088 247
136 3300048929 Ga0496126_0008429 Ga0496126_0008429_6586_7332 247
137 3300048929 Ga0496126_0318579 Ga0496126_0318579_200_946 247
138 3300005436 Ga0070713_100597863 Ga0070713_1005978632 248
139 3300005548 Ga0070665_100285163 Ga0070665_1002851632 248
140 3300031456 Ga0307513_10267737 Ga0307513_102677371 248
141 3300048922 Ga0496119_0000413 Ga0496119_0000413_57242_57997 248
142 3300048922 Ga0496119_0000609 Ga0496119_0000609_21984_22736 248
143 3300048923 Ga0496120_0000649 Ga0496120_0000649_48975_49727 248
144 3300048923 Ga0496120_0009821 Ga0496120_0009821_5823_6578 248
145 3300048928 Ga0496125_0005268 Ga0496125_0005268_11927_12682 248
146 3300048929 Ga0496126_0197514 Ga0496126_0197514_344_1099 248
147 3300005329 Ga0070683_100061809 Ga0070683_1000618093 249
148 3300005335 Ga0070666_10124259 Ga0070666_101242592 249
149 3300005336 Ga0070680_100002512 Ga0070680_1000025127 249
150 3300005367 Ga0070667_100092115 Ga0070667_1000921153 249
151 3300005458 Ga0070681_10349199 Ga0070681_103491992 249
152 3300005530 Ga0070679_100174817 Ga0070679_1001748172 249
153 3300005548 Ga0070665_100231251 Ga0070665_1002312511 249
154 3300005563 Ga0068855_100297218 Ga0068855_1002972182 249
155 3300005616 Ga0068852_100588972 Ga0068852_1005889722 249
156 3300005843 Ga0068860_100274420 Ga0068860_1002744202 249
157 3300009093 Ga0105240_10017945 Ga0105240_100179453 249
158 3300009545 Ga0105237_10035860 Ga0105237_100358606 249
159 3300009545 Ga0105237_10038375 Ga0105237_100383754 249
160 3300009553 Ga0105249_10008436 Ga0105249_100084364 249
161 3300013104 Ga0157370_10262534 Ga0157370_102625342 249
162 3300013105 Ga0157369_10962689 Ga0157369_109626892 249
163 3300013307 Ga0157372_10294480 Ga0157372_102944801 249
164 3300014325 Ga0163163_10587354 Ga0163163_105873542 249
165 3300014968 Ga0157379_10134162 Ga0157379_101341622 249
166 3300014968 Ga0157379_10169833 Ga0157379_101698332 249
167 3300014969 Ga0157376_10578549 Ga0157376_105785492 249
168 3300025913 Ga0207695_10026081 Ga0207695_100260817 249
169 3300025913 Ga0207695_10052464 Ga0207695_100524641 249
170 3300025913 Ga0207695_10456768 Ga0207695_104567682 249
171 3300025914 Ga0207671_10147801 Ga0207671_101478012 249
172 3300025914 Ga0207671_10311111 Ga0207671_103111112 249
173 3300025921 Ga0207652_10141415 Ga0207652_101414152 249
174 3300025931 Ga0207644_10001632 Ga0207644_100016325 249
175 3300025944 Ga0207661_10013656 Ga0207661_100136564 249
176 3300025949 Ga0207667_10311889 Ga0207667_103118892 249
177 3300025961 Ga0207712_10023948 Ga0207712_100239484 249
178 3300025986 Ga0207658_10262896 Ga0207658_102628962 249
179 3300028379 Ga0268266_10106591 Ga0268266_101065913 249
180 3300028379 Ga0268266_10724071 Ga0268266_107240711 249
181 3300028381 Ga0268264_10290322 Ga0268264_102903222 249
182 3300028573 Ga0265334_10011087 Ga0265334_100110873 249
183 3300028573 Ga0265334_10064676 Ga0265334_100646762 249
184 3300031250 Ga0265331_10003317 Ga0265331_100033179 249
185 3300044656 Ga0466969_0009737 Ga0466969_0009737_97_852 249
186 3300045049 Ga0466959_0016173 Ga0466959_0016173_4188_4943 249
187 3300048915 Ga0496112_0089190 Ga0496112_0089190_2064_2816 249
188 3300048927 Ga0496124_0333885 Ga0496124_0333885_244_996 249
189 3300048929 Ga0496126_0003870 Ga0496126_0003870_1831_2586 249

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00929

RNase_T

Exonuclease

32

194

0.92

PF13482

RNase_H_2

RNase_H superfamily

32

186

0.73

Structural Annotation

Top 5 Hits

ID Description Score Start End
1j53-assembly1.cif.gz_A structure of the n-terminal exonuclease domain of the epsilon subunit of e.coli dna polymerase iii at ph 8.5 0.9857 3 171
2ido-assembly1.cif.gz_A structure of the e. coli pol iii epsilon-hot proofreading complex 0.9605 1 171
1j53-assembly1.cif.gz_A structure of the n-terminal exonuclease domain of the epsilon subunit of e.coli dna polymerase iii at ph 8.5 0.9521 3 171
2ido-assembly1.cif.gz_A structure of the e. coli pol iii epsilon-hot proofreading complex 0.9495 1 171
4hcc-assembly1.cif.gz_A the zinc ion bound form of crystal structure of e.coli exoi-ssdna complex 0.8669 2 173
ID Description Score Start End Superfamily
1j54A00 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9854 3 171 3.30.420.10
1j54A00 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9519 3 171 3.30.420.10
af_B0G161_292_467_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9395 2 166 3.30.420.10
af_Q2G1Z8_409_554_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9221 2 141 3.30.420.10
2p1jB01 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9189 4 144 3.30.420.10
ID Description Score Start End GO Terms
AF-A0A3D1EHY4-F1-model_v4 deleted 1.001 3 94
AF-A0A382PCW3-F1-model_v4 Exonuclease domain-containing protein 0.9978 1 81 GO:0003677
GO:0003887
GO:0005829
GO:0008408
GO:0045004
AF-K1Z9C3-F1-model_v4 Epsilon subunit, 3-5 exonucleolytic proofreading function 0.9976 2 91 GO:0003677
GO:0003887
GO:0005829
GO:0008408
GO:0045004
AF-E2XR20-F1-model_v4 deleted 0.9972 1 88
AF-A0A3C1SQ90-F1-model_v4 DNA polymerase III subunit epsilon 0.9971 2 93 GO:0003677
GO:0003887
GO:0005829
GO:0008408
GO:0045004

Feature Viewer

pLDDT pTM Quality
80.8 0.65 Medium
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Predicted Structure (AlphaFold2)

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