F291118

General Info

Members Datasets Scaffolds Average Seq Length
189 121 378 153

Family's Representative Sequence

Representative Sequence 3300026121|Ga0207683_10031068|Ga0207683_100310682
Length 184
Sequence MKLSLRGEYALRALLVLGLNVDRNVVRIQEISEHQNIPKRFLEQILNDLKSGGFVLSKRGVAGGYRLALPPDEIRLAAVIRHMEGALAPVSCVSERFYEKCSCPDESRCAIRSVMGEVREAIVRVAEDALQVGFGERAGIHDEARVATHEPRVRAPQREGARVVGGDEADVVLVIRAPCKQLVL

Samples

Sample ID Description Type Environment
1 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
3 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
4 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
5 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
6 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
13 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
14 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
15 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
16 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
21 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
22 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
23 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
24 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
25 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
26 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
27 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
31 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
32 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
33 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
35 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
36 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
39 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
42 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
43 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
44 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
47 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
48 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
49 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
50 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
51 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
52 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
53 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
81 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
82 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
83 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
84 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
85 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
86 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
87 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
88 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
89 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
90 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
91 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
92 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
93 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
94 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
95 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
96 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
97 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
98 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
99 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
100 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
101 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
102 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
103 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
104 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
105 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
106 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
107 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
108 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
109 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
110 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
111 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
112 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
113 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
114 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
115 3300049519 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C22_B_7_drought Metagenome Rhizosphere
116 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049674 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_A_3_drought Metagenome Rhizosphere
118 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
119 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
120 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
121 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.53
Nodule 0
Rhizoplane 0.53
Rhizosphere 97.88
Stem 0
Stem Tuber 0
Unclassified 30.69

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207683_10031068 3300026121 Bacteria 4634
2 Ga0070690_100523222 3300005330 Bacteria 890
3 Ga0068869_100789456 3300005334 Unclassified 815
4 Ga0070689_100034571 3300005340 Bacteria 3856
5 Ga0070689_100757342 3300005340 Bacteria 851
6 Ga0070691_10054384 3300005341 Unclassified 1916
7 Ga0070675_100631535 3300005354 Bacteria 973
8 Ga0070671_100657092 3300005355 Bacteria 908
9 Ga0070674_100325705 3300005356 Bacteria 1233
10 Ga0070714_100015012 3300005435 Bacteria 6226
11 Ga0070678_100833613 3300005456 Unclassified 839
12 Ga0070681_10117788 3300005458 Bacteria 2592
13 Ga0070681_10246052 3300005458 Unclassified 1701
14 Ga0070681_10472592 3300005458 Unclassified 1166
15 Ga0070681_10683629 3300005458 Unclassified 942
16 Ga0070685_10186407 3300005466 Bacteria 1339
17 Ga0070698_101065542 3300005471 Unclassified 756
18 Ga0068853_100543387 3300005539 Unclassified 1100
19 Ga0070686_100034301 3300005544 Bacteria 3126
20 Ga0070695_101037406 3300005545 Bacteria 668
21 Ga0070695_101313906 3300005545 Unclassified 598
22 Ga0068855_100030636 3300005563 Bacteria 6432
23 Ga0068855_100084488 3300005563 Bacteria 3674
24 Ga0068855_100683217 3300005563 Bacteria 1100
25 Ga0068855_101405302 3300005563 Unclassified 719
26 Ga0068857_101208402 3300005577 Bacteria 732
27 Ga0068856_100080191 3300005614 Bacteria 3237
28 Ga0068856_100611169 3300005614 Bacteria 1111
29 Ga0070702_100242583 3300005615 Bacteria 1217
30 Ga0068852_100354098 3300005616 Bacteria 1434
31 Ga0068859_100070837 3300005617 Unclassified 3522
32 Ga0068859_100480275 3300005617 Bacteria 1338
33 Ga0068864_100251336 3300005618 Bacteria 1642
34 Ga0068864_100292108 3300005618 Bacteria 1524
35 Ga0068864_100469635 3300005618 Bacteria 1206
36 Ga0068864_101508162 3300005618 Unclassified 675
37 Ga0068864_101898593 3300005618 Unclassified 601
38 Ga0068861_100288467 3300005719 Bacteria 1416
39 Ga0068863_100009826 3300005841 Bacteria 9322
40 Ga0068863_100511406 3300005841 Bacteria 1183
41 Ga0068863_101682711 3300005841 Bacteria 644
42 Ga0068862_100433731 3300005844 Bacteria 1235
43 Ga0097621_100426056 3300006237 Bacteria 1192
44 Ga0068871_100005530 3300006358 Bacteria 8862
45 Ga0068871_100739558 3300006358 Bacteria 903
46 Ga0075428_100272505 3300006844 Unclassified 1821
47 Ga0075431_100234062 3300006847 Bacteria 1871
48 Ga0075429_100210461 3300006880 Bacteria 1704
49 Ga0075429_100793785 3300006880 Unclassified 829
50 Ga0075436_100056442 3300006914 Bacteria 2712
51 Ga0097620_100070838 3300006931 Unclassified 3522
52 Ga0097620_100356374 3300006931 Unclassified 1558
53 Ga0097620_100480275 3300006931 Bacteria 1338
54 Ga0099794_10152652 3300007265 Bacteria 1172
55 Ga0105240_10034310 3300009093 Bacteria 6546
56 Ga0105240_10086634 3300009093 Bacteria 3836
57 Ga0105240_10123723 3300009093 Bacteria 3111
58 Ga0105240_10439206 3300009093 Bacteria 1463
59 Ga0105240_11081038 3300009093 Unclassified 854
60 Ga0111539_10007972 3300009094 Bacteria 13507
61 Ga0111539_10983228 3300009094 Bacteria 981
62 Ga0111539_11079383 3300009094 Bacteria 933
63 Ga0114129_12051378 3300009147 Bacteria 691
64 Ga0105241_10276727 3300009174 Bacteria 1432
65 Ga0105242_10157564 3300009176 Bacteria 1985
66 Ga0105248_10400045 3300009177 Bacteria 1546
67 Ga0105248_11673603 3300009177 Unclassified 721
68 Ga0105237_10511881 3300009545 Bacteria 1207
69 Ga0105238_10028026 3300009551 Bacteria 5739
70 Ga0105238_10294400 3300009551 Bacteria 1606
71 Ga0105238_12032893 3300009551 Unclassified 608
72 Ga0105246_10522728 3300011119 Bacteria 1012
73 Ga0157370_10322148 3300013104 Unclassified 1425
74 Ga0157369_10145312 3300013105 Unclassified 2508
75 Ga0157374_10099321 3300013296 Bacteria 2788
76 Ga0157374_10764987 3300013296 Bacteria 981
77 Ga0157378_10323903 3300013297 Bacteria 1498
78 Ga0157378_10642457 3300013297 Bacteria 1076
79 Ga0157378_11698987 3300013297 Unclassified 678
80 Ga0163162_10265129 3300013306 Bacteria 1849
81 Ga0163162_10520758 3300013306 Unclassified 1319
82 Ga0163162_10835405 3300013306 Bacteria 1037
83 Ga0163162_12520364 3300013306 Bacteria 591
84 Ga0157372_10045969 3300013307 Bacteria 4844
85 Ga0157372_10644191 3300013307 Unclassified 1234
86 Ga0163163_10000050 3300014325 Bacteria 128713
87 Ga0163163_10514273 3300014325 Unclassified 1259
88 Ga0157379_11934855 3300014968 Unclassified 582
89 Ga0157376_10991928 3300014969 Bacteria 862
90 Ga0157376_11054107 3300014969 Bacteria 837
91 Ga0207705_10352588 3300025909 Unclassified 1134
92 Ga0207654_10333298 3300025911 Bacteria 1040
93 Ga0207707_10242847 3300025912 Unclassified 1565
94 Ga0207707_11129091 3300025912 Unclassified 637
95 Ga0207695_10043248 3300025913 Bacteria 4801
96 Ga0207695_10072015 3300025913 Bacteria 3528
97 Ga0207695_10107977 3300025913 Bacteria 2768
98 Ga0207695_10108235 3300025913 Bacteria 2764
99 Ga0207695_10257811 3300025913 Bacteria 1642
100 Ga0207695_10749862 3300025913 Unclassified 857
101 Ga0207660_10372819 3300025917 Bacteria 1146
102 Ga0207660_11188768 3300025917 Unclassified 621
103 Ga0207657_10606531 3300025919 Unclassified 854
104 Ga0207652_10903192 3300025921 Bacteria 780
105 Ga0207694_10724207 3300025924 Unclassified 839
106 Ga0207664_10001478 3300025929 Bacteria 15421
107 Ga0207664_10612642 3300025929 Bacteria 978
108 Ga0207644_11167919 3300025931 Unclassified 647
109 Ga0207686_10111506 3300025934 Bacteria 1846
110 Ga0207670_10005824 3300025936 Bacteria 6803
111 Ga0207670_10140408 3300025936 Bacteria 1781
112 Ga0207670_10599748 3300025936 Bacteria 904
113 Ga0207670_10815786 3300025936 Unclassified 778
114 Ga0207669_10181691 3300025937 Bacteria 1509
115 Ga0207704_10562378 3300025938 Bacteria 928
116 Ga0207661_10302484 3300025944 Unclassified 1434
117 Ga0207667_10030363 3300025949 Bacteria 5848
118 Ga0207667_10197692 3300025949 Bacteria 2063
119 Ga0207667_11154131 3300025949 Unclassified 756
120 Ga0207640_10275048 3300025981 Bacteria 1320
121 Ga0207677_10621710 3300026023 Bacteria 950
122 Ga0207639_10474741 3300026041 Unclassified 1139
123 Ga0207708_10108328 3300026075 Bacteria 2155
124 Ga0207702_10139367 3300026078 Bacteria 2193
125 Ga0207641_10037400 3300026088 Bacteria 4053
126 Ga0207676_10222917 3300026095 Bacteria 1680
127 Ga0207674_10105341 3300026116 Unclassified 2798
128 Ga0268266_11874775 3300028379 Bacteria 574
129 Ga0268265_10281654 3300028380 Bacteria 1488
130 Ga0268264_10679112 3300028381 Bacteria 1021
131 Ga0265337_1003712 3300028556 Bacteria 6527
132 Ga0265338_10009566 3300028800 Bacteria 11530
133 Ga0265338_10114609 3300028800 Bacteria 2162
134 Ga0265338_10156289 3300028800 Unclassified 1766
135 Ga0265324_10076256 3300029957 Bacteria 1141
136 Ga0265320_10033268 3300031240 Bacteria 2633
137 Ga0265320_10039174 3300031240 Unclassified 2372
138 Ga0265329_10001803 3300031242 Bacteria 10191
139 Ga0307513_10492409 3300031456 Bacteria 944
140 Ga0307408_100248782 3300031548 Bacteria 1465
141 Ga0265314_10000206 3300031711 Bacteria 87046
142 Ga0265314_10030691 3300031711 Unclassified 3976
143 Ga0265314_10462554 3300031711 Bacteria 674
144 Ga0307405_10142467 3300031731 Bacteria 1674
145 Ga0307410_10810034 3300031852 Unclassified 797
146 Ga0307412_11053596 3300031911 Bacteria 721
147 Ga0307409_100171745 3300031995 Bacteria 1909
148 Ga0307416_101296486 3300032002 Unclassified 834
149 Ga0307411_10752054 3300032005 Bacteria 854
150 Ga0373935_0667837 3300035692 Bacteria 763
151 Ga0373937_0101393 3300036401 Bacteria 2672
152 Ga0395900_0046449 3300037418 Bacteria 4472
153 Ga0395905_0050292 3300037471 Bacteria 3905
154 Ga0395905_0771481 3300037471 Unclassified 864
155 Ga0451839_1319656 3300041496 Unclassified 597
156 Ga0451577_0002845 3300042876 Bacteria 19906
157 Ga0453683_0962247 3300044673 Unclassified 566
158 Ga0453684_0030068 3300044712 Bacteria 7686
159 Ga0451576_0157084 3300045051 Bacteria 2373
160 Ga0451576_0267830 3300045051 Bacteria 1786
161 Ga0451576_0611913 3300045051 Bacteria 1145
162 Ga0451576_0974653 3300045051 Unclassified 889
163 Ga0451576_1546172 3300045051 Unclassified 689
164 Ga0495592_0000098 3300046454 Bacteria 77430
165 Ga0495653_0751259 3300046463 Bacteria 589
166 Ga0495662_0032584 3300046476 Bacteria 2518
167 Ga0495630_0086732 3300046517 Bacteria 2364
168 Ga0495630_0381857 3300046517 Bacteria 1079
169 Ga0495630_0958192 3300046517 Unclassified 651
170 Ga0495586_0000230 3300046535 Bacteria 37141
171 Ga0495586_0242822 3300046535 Bacteria 1027
172 Ga0495645_0930611 3300046543 Bacteria 514
173 Ga0495634_0683817 3300046642 Bacteria 591
174 Ga0495635_0194103 3300046663 Bacteria 1378
175 Ga0495599_0009989 3300046678 Bacteria 5810
176 Ga0495599_0018706 3300046678 Unclassified 4317
177 Ga0495669_0101450 3300046684 Bacteria 1337
178 Ga0495675_0230234 3300047444 Bacteria 1119
179 Ga0496115_0019715 3300048918 Bacteria 5193
180 Ga0501296_023008 3300049519 Unclassified 806
181 Ga0501033_0416920 3300049570 Unclassified 935
182 Ga0501242_052577 3300049674 Unclassified 602
183 nmdc:mga06r32_248287_c1 3300050510 Bacteria 1767
184 nmdc:mga08y16_1486574_c1 3300050511 Unclassified 638
185 nmdc:mga08y16_7173_c1 3300050511 Bacteria 11695
186 nmdc:mga08y16_887933_c1 3300050511 Unclassified 878
187 nmdc:mga08x19_45542_c1 3300050514 Bacteria 2803
188 nmdc:mga08x19_728716_c1 3300050514 Unclassified 704
189 Ga0500595_094331 3300053119 Bacteria 863
190 Ga0207683_10031068
191 Ga0070690_100523222
192 Ga0068869_100789456
193 Ga0070689_100034571
194 Ga0070689_100757342
195 Ga0070691_10054384
196 Ga0070675_100631535
197 Ga0070671_100657092
198 Ga0070674_100325705
199 Ga0070714_100015012
200 Ga0070678_100833613
201 Ga0070681_10117788
202 Ga0070681_10246052
203 Ga0070681_10472592
204 Ga0070681_10683629
205 Ga0070685_10186407
206 Ga0070698_101065542
207 Ga0068853_100543387
208 Ga0070686_100034301
209 Ga0070695_101037406
210 Ga0070695_101313906
211 Ga0068855_100030636
212 Ga0068855_100084488
213 Ga0068855_100683217
214 Ga0068855_101405302
215 Ga0068857_101208402
216 Ga0068856_100080191
217 Ga0068856_100611169
218 Ga0070702_100242583
219 Ga0068852_100354098
220 Ga0068859_100070837
221 Ga0068859_100480275
222 Ga0068864_100251336
223 Ga0068864_100292108
224 Ga0068864_100469635
225 Ga0068864_101508162
226 Ga0068864_101898593
227 Ga0068861_100288467
228 Ga0068863_100009826
229 Ga0068863_100511406
230 Ga0068863_101682711
231 Ga0068862_100433731
232 Ga0097621_100426056
233 Ga0068871_100005530
234 Ga0068871_100739558
235 Ga0075428_100272505
236 Ga0075431_100234062
237 Ga0075429_100210461
238 Ga0075429_100793785
239 Ga0075436_100056442
240 Ga0097620_100070838
241 Ga0097620_100356374
242 Ga0097620_100480275
243 Ga0099794_10152652
244 Ga0105240_10034310
245 Ga0105240_10086634
246 Ga0105240_10123723
247 Ga0105240_10439206
248 Ga0105240_11081038
249 Ga0111539_10007972
250 Ga0111539_10983228
251 Ga0111539_11079383
252 Ga0114129_12051378
253 Ga0105241_10276727
254 Ga0105242_10157564
255 Ga0105248_10400045
256 Ga0105248_11673603
257 Ga0105237_10511881
258 Ga0105238_10028026
259 Ga0105238_10294400
260 Ga0105238_12032893
261 Ga0105246_10522728
262 Ga0157370_10322148
263 Ga0157369_10145312
264 Ga0157374_10099321
265 Ga0157374_10764987
266 Ga0157378_10323903
267 Ga0157378_10642457
268 Ga0157378_11698987
269 Ga0163162_10265129
270 Ga0163162_10520758
271 Ga0163162_10835405
272 Ga0163162_12520364
273 Ga0157372_10045969
274 Ga0157372_10644191
275 Ga0163163_10000050
276 Ga0163163_10514273
277 Ga0157379_11934855
278 Ga0157376_10991928
279 Ga0157376_11054107
280 Ga0207705_10352588
281 Ga0207654_10333298
282 Ga0207707_10242847
283 Ga0207707_11129091
284 Ga0207695_10043248
285 Ga0207695_10072015
286 Ga0207695_10107977
287 Ga0207695_10108235
288 Ga0207695_10257811
289 Ga0207695_10749862
290 Ga0207660_10372819
291 Ga0207660_11188768
292 Ga0207657_10606531
293 Ga0207652_10903192
294 Ga0207694_10724207
295 Ga0207664_10001478
296 Ga0207664_10612642
297 Ga0207644_11167919
298 Ga0207686_10111506
299 Ga0207670_10005824
300 Ga0207670_10140408
301 Ga0207670_10599748
302 Ga0207670_10815786
303 Ga0207669_10181691
304 Ga0207704_10562378
305 Ga0207661_10302484
306 Ga0207667_10030363
307 Ga0207667_10197692
308 Ga0207667_11154131
309 Ga0207640_10275048
310 Ga0207677_10621710
311 Ga0207639_10474741
312 Ga0207708_10108328
313 Ga0207702_10139367
314 Ga0207641_10037400
315 Ga0207676_10222917
316 Ga0207674_10105341
317 Ga0268266_11874775
318 Ga0268265_10281654
319 Ga0268264_10679112
320 Ga0265337_1003712
321 Ga0265338_10009566
322 Ga0265338_10114609
323 Ga0265338_10156289
324 Ga0265324_10076256
325 Ga0265320_10033268
326 Ga0265320_10039174
327 Ga0265329_10001803
328 Ga0307513_10492409
329 Ga0307408_100248782
330 Ga0265314_10000206
331 Ga0265314_10030691
332 Ga0265314_10462554
333 Ga0307405_10142467
334 Ga0307410_10810034
335 Ga0307412_11053596
336 Ga0307409_100171745
337 Ga0307416_101296486
338 Ga0307411_10752054
339 Ga0373935_0667837
340 Ga0373937_0101393
341 Ga0395900_0046449
342 Ga0395905_0050292
343 Ga0395905_0771481
344 Ga0451839_1319656
345 Ga0451577_0002845
346 Ga0453683_0962247
347 Ga0453684_0030068
348 Ga0451576_0157084
349 Ga0451576_0267830
350 Ga0451576_0611913
351 Ga0451576_0974653
352 Ga0451576_1546172
353 Ga0495592_0000098
354 Ga0495653_0751259
355 Ga0495662_0032584
356 Ga0495630_0086732
357 Ga0495630_0381857
358 Ga0495630_0958192
359 Ga0495586_0000230
360 Ga0495586_0242822
361 Ga0495645_0930611
362 Ga0495634_0683817
363 Ga0495635_0194103
364 Ga0495599_0009989
365 Ga0495599_0018706
366 Ga0495669_0101450
367 Ga0495675_0230234
368 Ga0496115_0019715
369 Ga0501296_023008
370 Ga0501033_0416920
371 Ga0501242_052577
372 nmdc:mga06r32_248287_c1
373 nmdc:mga08y16_1486574_c1
374 nmdc:mga08y16_7173_c1
375 nmdc:mga08y16_887933_c1
376 nmdc:mga08x19_45542_c1
377 nmdc:mga08x19_728716_c1
378 Ga0500595_094331

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02082

Rrf2

Iron-dependent Transcriptional regulator

3

129

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
4hf2-assembly1.cif.gz_A crystal structure of e43a iscr mutant bound to its promoter 0.9176 1 134
3lwf-assembly1.cif.gz_A crystal structure of putative transcriptional regulator (np_470886.1) from listeria innocua at 2.06 a resolution 0.9134 1 134
5zup-assembly1.cif.gz_A crystal structure of bz junction in diverse sequence 0.9114 26 69
5zuo-assembly1.cif.gz_A crystal structure of bz junction in diverse sequence 0.9096 26 69
3f23-assembly1.cif.gz_A crystal structure of zalpha in complex with d(cggccg) 0.9077 4 67
ID Description Score Start End Superfamily
4hf2A00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9176 1 134 1.10.10.10
5zuoA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9096 26 69 1.10.10.10
3f22A00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9074 4 67 1.10.10.10
2y75D00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8993 1 135 1.10.10.10
af_P55265_129_209_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8975 5 69 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A660PGE3-F1-model_v4 Rrf2 family transcriptional regulator 0.9336 1 134 GO:0003700
GO:0005829
AF-A0A7V2NVM7-F1-model_v4 Rrf2 family transcriptional regulator 0.9321 1 135 GO:0003700
GO:0005829
AF-A0A1Q3MFK3-F1-model_v4 Transcriptional regulator 0.9316 2 153 GO:0003700
GO:0005829
AF-A0A1V5ZZS5-F1-model_v4 HTH-type transcriptional regulator CymR 0.9267 1 134 GO:0003700
GO:0005829
AF-A0A7C3RDP5-F1-model_v4 Rrf2 family transcriptional regulator 0.9263 1 136 GO:0003700
GO:0005829

Map