F290284

General Info

Members Datasets Scaffolds Average Seq Length
189 150 378 371

Family's Representative Sequence

Representative Sequence 3300003323|rootH1_10000936|rootH1_1000093618
Length 425
Sequence MPNTNGLIADECWAWLPTRPDPTYATMRENLMLTQRLLLSDRGGMIVLGLVLITMILVPICNLLVPETSALHISTFTVTLLGKFLCYALLALSVDLIWGYCGILSLGHGAFFALGGYAMGMYLMRQIGPRGQYGDPILPDFMVFLNWKELPWYWQGFDMFWFALLMIIVVPGILAFVFGWLAFRSRVTGVYFSIITQALTYALLLAFFRNEMGFGGNNGLTDFKDILGFPIAASGTRISLFLASGFMLILAYIACRYIVTSRMGKVIVSIRDAETRTRFCGYKVESYKLWLFVFSAILAGIAGALYVPQVGIINPGEFSPLNSIELVVWVATGGRGTLFGAIVGAFTVNYGKTVFTSYSPETWLFALGALFVIVTLVLPKGLVGLFNRTKKAASKQNSVTPNMGTSTENFISAETPVIAAVKEPV

Samples

Sample ID Description Type Environment
1 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
2 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
7 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
8 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
9 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
10 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
11 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
12 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
13 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
14 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
15 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
16 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
17 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
18 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
19 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
20 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
21 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
22 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
23 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
24 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
25 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
26 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
27 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
28 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
29 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
30 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
31 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
41 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
42 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
44 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
45 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
46 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
47 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
48 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
49 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
50 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
51 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
52 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
53 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
54 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
55 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
56 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
57 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
58 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
59 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
60 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
61 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
62 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
63 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
64 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
65 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
66 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
67 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
68 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
69 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
70 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
71 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
72 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
73 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
74 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
75 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
76 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
77 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
78 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
79 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
80 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
81 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
82 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
83 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
84 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
85 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
86 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
87 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
88 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
89 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
90 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
91 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
92 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
93 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
94 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
95 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
96 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
97 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
103 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
104 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
105 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
106 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
107 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
108 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
109 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
110 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
111 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
112 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
113 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
114 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
115 3300053105 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 endosphere Metagenome Endosphere
116 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
117 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
118 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
119 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
120 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
121 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
122 2510461069 Rhizobium sp. PDO1-076 Isolate Rhizosphere
123 2513237087 Azorhizobium doebereinerae UFLA1-100 Isolate Nodule
124 2522572158 Azospirillum halopraeferens DSM 3675 Isolate Unclassified
125 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
126 2599185236 Rhizobium sp. NFR07 Isolate Rhizoplane
127 2600254933 Rhizobium sp. NFR12 Isolate Rhizoplane
128 2643221558 Rhizobium sp. Root149 Isolate Unclassified
129 2643221582 Rhizobium sp. Root651 Isolate Unclassified
130 2643221651 Afipia sp. Root123D2 Isolate Unclassified
131 2643221719 Rhizobium sp. Root274 Isolate Unclassified
132 2738541276 Cellvibrio sp. YR554 Isolate Unclassified
133 2775507049 Rhizobium sp. ACO-34A Isolate Unclassified
134 2821123053 Rhizobium cellulosilyticum 1193 Isolate Unclassified
135 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified
136 2828305725 Xanthobacter tagetidis DSM 11105 Isolate Unclassified
137 2838736955 Rhizobium cellulosilyticum SEMIA 448 Isolate Nodule
138 2841840854 Rhizobium cellulosilyticum SEMIA 444 Isolate Nodule
139 2842140634 Rhizobium cellulosilyticum SEMIA 452 Isolate Nodule
140 2844533157 Inquilinus sp. R-72501 v. 2 Isolate Unclassified
141 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
142 2848858292 Azospirillum brasilense Az39 Isolate Unclassified
143 2857531043 Neorhizobium sp. R-72160 Isolate Unclassified
144 2899803654 Agrobacterium sp. a22-2 Isolate Unclassified
145 2989776772 Rhizobium glycinendophyticum CL12 Isolate Unclassified
146 3000405567 Rhodobacteraceae bacterium LNNU 3342 Isolate Rhizosphere
147 8002745576 Marinomonas spartinae USM8 Isolate Rhizosphere
148 8005246636 Rhizobium wuzhouense W44 Isolate Rhizosphere
149 8018150411 Rhizobium straminoryzae SM12 Isolate Rhizosphere
150 8055431914 Allorhizobium sonneratiae BGMRC 0089 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 84.13
Metatranscriptomes 0.53
Isolates 15.34

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.17
Nodule 2.65
Rhizoplane 1.59
Rhizosphere 64.55
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10000936 3300003323 Bacteria 32038
2 JGI25153J46596_10000105 3300003215 Bacteria 95783
3 rootH2_10175675 3300003320 Bacteria 6822
4 rootH1_10008698 3300003323 Bacteria 22564
5 Ga0055531_10029073 3300003794 Bacteria 1891
6 Ga0070680_100068045 3300005336 Bacteria 2922
7 Ga0070675_100113503 3300005354 Bacteria 2295
8 Ga0070659_100186455 3300005366 Bacteria 1704
9 Ga0070713_100030273 3300005436 Bacteria 4297
10 Ga0070713_100039065 3300005436 Bacteria 3849
11 Ga0070679_100354944 3300005530 Bacteria 1414
12 Ga0068859_100009668 3300005617 Bacteria 9734
13 Ga0068863_100343228 3300005841 Bacteria 1453
14 Ga0081455_10000142 3300005937 Bacteria 84680
15 Ga0081455_10106095 3300005937 Bacteria 2243
16 Ga0075367_10016000 3300006178 Bacteria 4090
17 Ga0097621_100110895 3300006237 Bacteria 2318
18 Ga0068871_100014693 3300006358 Bacteria 5842
19 Ga0075428_100495825 3300006844 Bacteria 1307
20 Ga0075430_100186768 3300006846 Bacteria 1723
21 Ga0097620_100009668 3300006931 Bacteria 9734
22 Ga0105240_10012548 3300009093 Bacteria 11690
23 Ga0105248_10122593 3300009177 Bacteria 2932
24 Ga0105237_10042115 3300009545 Bacteria 4605
25 Ga0105237_10082646 3300009545 Bacteria 3202
26 Ga0105238_10368552 3300009551 Bacteria 1426
27 Ga0105239_10180406 3300010375 Bacteria 2362
28 Ga0163162_10330769 3300013306 Bacteria 1656
29 Ga0163163_10225659 3300014325 Bacteria 1922
30 Ga0182008_10120623 3300014497 Bacteria 1303
31 Ga0163161_10219168 3300017792 Bacteria 1473
32 Ga0209758_1000279 3300025297 Bacteria 101326
33 Ga0209758_1015539 3300025297 Bacteria 3930
34 Ga0209050_1010650 3300025298 Bacteria 4495
35 Ga0209257_1000296 3300025304 Bacteria 109517
36 Ga0207695_10059998 3300025913 Bacteria 3941
37 Ga0207671_10300702 3300025914 Bacteria 1268
38 Ga0207693_10111189 3300025915 Bacteria 2149
39 Ga0207659_10167000 3300025926 Bacteria 1733
40 Ga0207700_10089980 3300025928 Bacteria 2421
41 Ga0207664_10016909 3300025929 Bacteria 5334
42 Ga0207664_10310563 3300025929 Bacteria 1389
43 Ga0207711_10049178 3300025941 Bacteria 3609
44 Ga0207702_10270989 3300026078 Bacteria 1601
45 Ga0207641_10132532 3300026088 Bacteria 2239
46 Ga0209281_1000068 3300027111 Bacteria 280238
47 Ga0209813_10004366 3300027866 Bacteria 3376
48 Ga0268266_10000234 3300028379 Bacteria 94817
49 Ga0265334_10000063 3300028573 Bacteria 78589
50 Ga0265338_10014895 3300028800 Bacteria 8600
51 Ga0265340_10006190 3300031247 Bacteria 6597
52 Ga0307408_100000394 3300031548 Bacteria 39710
53 Ga0307408_100005603 3300031548 Bacteria 8394
54 Ga0316575_10018773 3300031665 Bacteria 2639
55 Ga0316575_10021727 3300031665 Bacteria 2473
56 Ga0316579_10002335 3300031691 Bacteria 7166
57 Ga0316579_10014078 3300031691 Bacteria 3450
58 Ga0316579_10036534 3300031691 Bacteria 2266
59 Ga0316576_10000449 3300031727 Bacteria 19221
60 Ga0316576_10037004 3300031727 Bacteria 3491
61 Ga0316576_10063531 3300031727 Bacteria 2710
62 Ga0316576_10254995 3300031727 Bacteria 1316
63 Ga0316578_10005586 3300031728 Bacteria 6116
64 Ga0316578_10007822 3300031728 Bacteria 5397
65 Ga0316578_10016759 3300031728 Bacteria 3973
66 Ga0316578_10156446 3300031728 Bacteria 1374
67 Ga0316577_10010833 3300031733 Bacteria 4929
68 Ga0316577_10036334 3300031733 Bacteria 2755
69 Ga0307406_10001502 3300031901 Bacteria 12882
70 Ga0316583_10007052 3300032133 Bacteria 4043
71 Ga0316583_10011732 3300032133 Bacteria 3160
72 Ga0316585_10009490 3300032137 Bacteria 2841
73 Ga0316585_10021456 3300032137 Bacteria 1984
74 Ga0316585_10024351 3300032137 Bacteria 1872
75 Ga0316596_1000806 3300033541 Bacteria 5811
76 Ga0373923_0058415 3300035111 Bacteria 1633
77 Ga0373953_0051204 3300035117 Bacteria 1669
78 Ga0373953_0057386 3300035117 Bacteria 1585
79 Ga0373954_0100625 3300035118 Bacteria 1394
80 Ga0373943_0092762 3300035170 Bacteria 1567
81 Ga0373946_0085467 3300035171 Bacteria 1389
82 Ga0373955_0022779 3300035172 Bacteria 3182
83 Ga0373955_0030059 3300035172 Bacteria 2832
84 Ga0373935_0017161 3300035692 Bacteria 4387
85 Ga0373933_0005565 3300035724 Bacteria 6862
86 Ga0373937_0005604 3300036401 Bacteria 10779
87 Ga0373937_0011947 3300036401 Bacteria 7622
88 Ga0373937_0026584 3300036401 Bacteria 5229
89 Ga0373937_0033417 3300036401 Bacteria 4671
90 Ga0373937_0049854 3300036401 Bacteria 3834
91 Ga0316582_0003935 3300036647 Bacteria 7412
92 Ga0316582_0056179 3300036647 Bacteria 2510
93 Ga0316582_0121441 3300036647 Bacteria 1748
94 Ga0316582_0202548 3300036647 Bacteria 1354
95 Ga0316584_0070951 3300036712 Bacteria 2610
96 Ga0316584_0234553 3300036712 Bacteria 1344
97 Ga0373925_0284569 3300037068 Bacteria 1332
98 Ga0395900_0224959 3300037418 Bacteria 1889
99 Ga0316581_0007355 3300037588 Bacteria 2951
100 Ga0436364_0305089 3300037853 Bacteria 1726
101 Ga0436364_0907487 3300037853 Bacteria 1430
102 Ga0395901_0009197 3300038443 Bacteria 10010
103 Ga0400483_063017 3300039062 Bacteria 43797
104 Ga0400483_064632 3300039062 Bacteria 149376
105 Ga0400483_082903 3300039062 Bacteria 3141
106 Ga0400483_090901 3300039062 Bacteria 1542
107 Ga0400483_185206 3300039062 Bacteria 144624
108 Ga0400483_219768 3300039062 Bacteria 36553
109 Ga0436365_0773070 3300039437 Bacteria 1724
110 Ga0436361_0636959 3300039447 Bacteria 3183
111 Ga0495603_0009790 3300046455 Bacteria 5799
112 Ga0495651_0015341 3300046462 Bacteria 5924
113 Ga0495608_0178503 3300046511 Bacteria 1344
114 Ga0495630_0232011 3300046517 Bacteria 1410
115 Ga0495652_0111714 3300046529 Bacteria 2197
116 Ga0495640_0154108 3300046533 Bacteria 1475
117 Ga0495587_0011204 3300046536 Bacteria 5685
118 Ga0495645_0003453 3300046543 Bacteria 10720
119 Ga0495622_0017764 3300046557 Bacteria 3311
120 Ga0495622_0058631 3300046557 Bacteria 1783
121 Ga0495667_0010391 3300046559 Bacteria 6300
122 Ga0495599_0153172 3300046678 Bacteria 1427
123 Ga0495658_0028727 3300046683 Bacteria 3004
124 Ga0495604_0095417 3300047317 Bacteria 2197
125 Ga0495675_0001625 3300047444 Bacteria 13518
126 Ga0495602_0001294 3300048088 Bacteria 24672
127 Ga0496111_0004762 3300048914 Bacteria 8612
128 Ga0496118_0007115 3300048921 Bacteria 12006
129 Ga0496119_0005206 3300048922 Bacteria 12563
130 Ga0496121_0003418 3300048924 Bacteria 22706
131 Ga0496122_0103212 3300048925 Bacteria 1898
132 Ga0496125_0182554 3300048928 Bacteria 1396
133 Ga0496126_0253445 3300048929 Bacteria 1466
134 Ga0501033_0022239 3300049570 Bacteria 4784
135 Ga0501034_0002376 3300049571 Bacteria 22856
136 Ga0501037_0010598 3300049573 Bacteria 6772
137 Ga0501038_0001224 3300049574 Bacteria 23265
138 Ga0501043_0010497 3300049579 Bacteria 7252
139 Ga0501073_0001803 3300049589 Bacteria 15940
140 Ga0501080_0019751 3300049742 Bacteria 6239
141 Ga0501083_0017537 3300049744 Bacteria 4991
142 Ga0501044_0001571 3300049823 Bacteria 26728
143 nmdc:mga03n38_75264_c1 3300050490 Bacteria 1572
144 nmdc:mga06z11_53106_c1 3300050494 Bacteria 2083
145 nmdc:mga06z11_6651_c1 3300050494 Bacteria 4723
146 nmdc:mga06z11_88131_c1 3300050494 Bacteria 1680
147 nmdc:mga04h51_24855_c1 3300050495 Bacteria 1839
148 Ga0495601_0063677 3300053077 Bacteria 2344
149 Ga0495612_0005914 3300053078 Bacteria 5045
150 Ga0500635_0045095 3300053080 Bacteria 1490
151 Ga0495595_0053597 3300053084 Bacteria 1874
152 Ga0500647_0081689 3300053091 Bacteria 1550
153 Ga0500641_0001564 3300053096 Bacteria 8155
154 Ga0500557_000032 3300053105 Bacteria 74032
155 Ga0500642_0009362 3300053130 Bacteria 3395
156 Ga0500588_0052278 3300053146 Bacteria 1278
157 Ga0500604_0034432 3300053151 Bacteria 1502
158 Ga0500616_0000666 3300053153 Bacteria 40719
159 Ga0500636_0000443 3300053177 Bacteria 22859
160 Ga0500637_0012399 3300053178 Bacteria 4439
161 2510839304 2510461069 Bacteria 5505000
162 2513589609 2513237087 Bacteria 5817514
163 2523104520 2522572158 Bacteria 6514390
164 2599105566 2597490356 Bacteria 7030811
165 2599722275 2599185236 Bacteria 6875203
166 2600373980 2600254933 Bacteria 4750527
167 2643811079 2643221558 Bacteria 5460675
168 2643920041 2643221582 Bacteria 5804683
169 2644290458 2643221651 Bacteria 4798932
170 2644657262 2643221719 Bacteria 4568197
171 2738716122 2738541276 Bacteria 4690596
172 2776914344 2775507049 Bacteria 6284736
173 2821125927 2821123053 Bacteria 7836056
174 2821444340 2821443989 Bacteria 7658172
175 2828305885 2828305725 Bacteria 4916900
176 2838737596 2838736955 Bacteria 5760694
177 2841842035 2841840854 Bacteria 5761912
178 2842141814 2842140634 Bacteria 5759631
179 2844538192 2844533157 Bacteria 7517899
180 2846954748 2846952575 Bacteria 6587527
181 2848858984 2848858292 Bacteria 7391279
182 2857532489 2857531043 Bacteria 6754041
183 2899806679 2899803654 Bacteria 5577784
184 2989779606 2989776772 Bacteria 4843317
185 3000406414 3000405567 Bacteria 3779330
186 8002745792 8002745576 Bacteria 4840272
187 8005249780 8005246636 Bacteria 4933972
188 8018154069 8018150411 Bacteria 5549903
189 8055432233 8055431914 Bacteria 4551896
190 rootH1_10000936
191 JGI25153J46596_10000105
192 rootH2_10175675
193 rootH1_10008698
194 Ga0055531_10029073
195 Ga0070680_100068045
196 Ga0070675_100113503
197 Ga0070659_100186455
198 Ga0070713_100030273
199 Ga0070713_100039065
200 Ga0070679_100354944
201 Ga0068859_100009668
202 Ga0068863_100343228
203 Ga0081455_10000142
204 Ga0081455_10106095
205 Ga0075367_10016000
206 Ga0097621_100110895
207 Ga0068871_100014693
208 Ga0075428_100495825
209 Ga0075430_100186768
210 Ga0097620_100009668
211 Ga0105240_10012548
212 Ga0105248_10122593
213 Ga0105237_10042115
214 Ga0105237_10082646
215 Ga0105238_10368552
216 Ga0105239_10180406
217 Ga0163162_10330769
218 Ga0163163_10225659
219 Ga0182008_10120623
220 Ga0163161_10219168
221 Ga0209758_1000279
222 Ga0209758_1015539
223 Ga0209050_1010650
224 Ga0209257_1000296
225 Ga0207695_10059998
226 Ga0207671_10300702
227 Ga0207693_10111189
228 Ga0207659_10167000
229 Ga0207700_10089980
230 Ga0207664_10016909
231 Ga0207664_10310563
232 Ga0207711_10049178
233 Ga0207702_10270989
234 Ga0207641_10132532
235 Ga0209281_1000068
236 Ga0209813_10004366
237 Ga0268266_10000234
238 Ga0265334_10000063
239 Ga0265338_10014895
240 Ga0265340_10006190
241 Ga0307408_100000394
242 Ga0307408_100005603
243 Ga0316575_10018773
244 Ga0316575_10021727
245 Ga0316579_10002335
246 Ga0316579_10014078
247 Ga0316579_10036534
248 Ga0316576_10000449
249 Ga0316576_10037004
250 Ga0316576_10063531
251 Ga0316576_10254995
252 Ga0316578_10005586
253 Ga0316578_10007822
254 Ga0316578_10016759
255 Ga0316578_10156446
256 Ga0316577_10010833
257 Ga0316577_10036334
258 Ga0307406_10001502
259 Ga0316583_10007052
260 Ga0316583_10011732
261 Ga0316585_10009490
262 Ga0316585_10021456
263 Ga0316585_10024351
264 Ga0316596_1000806
265 Ga0373923_0058415
266 Ga0373953_0051204
267 Ga0373953_0057386
268 Ga0373954_0100625
269 Ga0373943_0092762
270 Ga0373946_0085467
271 Ga0373955_0022779
272 Ga0373955_0030059
273 Ga0373935_0017161
274 Ga0373933_0005565
275 Ga0373937_0005604
276 Ga0373937_0011947
277 Ga0373937_0026584
278 Ga0373937_0033417
279 Ga0373937_0049854
280 Ga0316582_0003935
281 Ga0316582_0056179
282 Ga0316582_0121441
283 Ga0316582_0202548
284 Ga0316584_0070951
285 Ga0316584_0234553
286 Ga0373925_0284569
287 Ga0395900_0224959
288 Ga0316581_0007355
289 Ga0436364_0305089
290 Ga0436364_0907487
291 Ga0395901_0009197
292 Ga0400483_063017
293 Ga0400483_064632
294 Ga0400483_082903
295 Ga0400483_090901
296 Ga0400483_185206
297 Ga0400483_219768
298 Ga0436365_0773070
299 Ga0436361_0636959
300 Ga0495603_0009790
301 Ga0495651_0015341
302 Ga0495608_0178503
303 Ga0495630_0232011
304 Ga0495652_0111714
305 Ga0495640_0154108
306 Ga0495587_0011204
307 Ga0495645_0003453
308 Ga0495622_0017764
309 Ga0495622_0058631
310 Ga0495667_0010391
311 Ga0495599_0153172
312 Ga0495658_0028727
313 Ga0495604_0095417
314 Ga0495675_0001625
315 Ga0495602_0001294
316 Ga0496111_0004762
317 Ga0496118_0007115
318 Ga0496119_0005206
319 Ga0496121_0003418
320 Ga0496122_0103212
321 Ga0496125_0182554
322 Ga0496126_0253445
323 Ga0501033_0022239
324 Ga0501034_0002376
325 Ga0501037_0010598
326 Ga0501038_0001224
327 Ga0501043_0010497
328 Ga0501073_0001803
329 Ga0501080_0019751
330 Ga0501083_0017537
331 Ga0501044_0001571
332 nmdc:mga03n38_75264_c1
333 nmdc:mga06z11_53106_c1
334 nmdc:mga06z11_6651_c1
335 nmdc:mga06z11_88131_c1
336 nmdc:mga04h51_24855_c1
337 Ga0495601_0063677
338 Ga0495612_0005914
339 Ga0500635_0045095
340 Ga0495595_0053597
341 Ga0500647_0081689
342 Ga0500641_0001564
343 Ga0500557_000032
344 Ga0500642_0009362
345 Ga0500588_0052278
346 Ga0500604_0034432
347 Ga0500616_0000666
348 Ga0500636_0000443
349 Ga0500637_0012399
350 2510839304
351 2513589609
352 2523104520
353 2599105566
354 2599722275
355 2600373980
356 2643811079
357 2643920041
358 2644290458
359 2644657262
360 2738716122
361 2776914344
362 2821125927
363 2821444340
364 2828305885
365 2838737596
366 2841842035
367 2842141814
368 2844538192
369 2846954748
370 2848858984
371 2857532489
372 2899806679
373 2989779606
374 3000406414
375 8002745792
376 8005249780
377 8018154069
378 8055432233

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02653

BPD_transp_2

Branched-chain amino acid transport system / permease component

76

375

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
7kyo-assembly1.cif.gz_C-2 psabc from streptococcus pneumoniae in complex with fab 0.4657 35 341
7kyp-assembly4.cif.gz_N psabc from streptococcus pneumoniae in complex with fab 0.4643 40 351
7kyo-assembly1.cif.gz_C-2 psabc from streptococcus pneumoniae in complex with fab 0.4628 35 341
7kyp-assembly4.cif.gz_N psabc from streptococcus pneumoniae in complex with fab 0.4432 40 351
4g1u-assembly1.cif.gz_B x-ray structure of the bacterial heme transporter hmuuv from yersinia pestis 0.4244 5 353
ID Description Score Start End Superfamily
af_P39328_55_321_1.10.3470.10 Mainly Alpha;Orthogonal Bundle;ABC transporter involved in vitamin B12 uptake, BtuC;ABC transporter involved in vitamin B12 uptake, BtuC 0.754 35 335 1.10.3470.10
af_P77315_52_317_1.10.3470.10 Mainly Alpha;Orthogonal Bundle;ABC transporter involved in vitamin B12 uptake, BtuC;ABC transporter involved in vitamin B12 uptake, BtuC 0.7493 42 334 1.10.3470.10
af_P39328_55_321_1.10.3470.10 Mainly Alpha;Orthogonal Bundle;ABC transporter involved in vitamin B12 uptake, BtuC;ABC transporter involved in vitamin B12 uptake, BtuC 0.749 35 335 1.10.3470.10
af_P0AE26_50_315_1.10.3470.10 Mainly Alpha;Orthogonal Bundle;ABC transporter involved in vitamin B12 uptake, BtuC;ABC transporter involved in vitamin B12 uptake, BtuC 0.7463 40 333 1.10.3470.10
af_P0AGI1_45_314_1.10.3470.10 Mainly Alpha;Orthogonal Bundle;ABC transporter involved in vitamin B12 uptake, BtuC;ABC transporter involved in vitamin B12 uptake, BtuC 0.7456 38 334 1.10.3470.10
ID Description Score Start End GO Terms
AF-A0A536UCB9-F1-model_v4 Urea ABC transporter permease subunit UrtC 0.9542 46 353 GO:0005886
GO:0015658
AF-A0A4D4ISF7-F1-model_v4 deleted 0.9517 1 353
AF-A0A3B0ZFJ6-F1-model_v4 Urea ABC transporter, permease protein UrtC 0.9512 2 354 GO:0005886
GO:0015658
AF-A0A2T3NZT5-F1-model_v4 Urea ABC transporter permease subunit UrtC 0.9505 2 354 GO:0005886
GO:0015658
AF-A0A4Y8QDC9-F1-model_v4 deleted 0.9499 5 354

Map