F290148

General Info

Members Datasets Scaffolds Average Seq Length
188 118 376 291

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2721755763|2723878146
Length 339
Sequence HHHDHARGAPHDHEHGAHGHAGHGHTGHSHAGHSHAGHDHLHGVADQRRIGWAFVIIAAFMCVEVAGGLLSGSLALLADAGHMVSDAAALGFSWLAIHYGRRPATAQLSYGYKRLEILAAFVNGCALFVIAAWIVIEAIQRFAAPVPVVGKTMLIVALVGLAANIGAFLVLHAGNRENLNLRGAWLHVMGDMLGSAAAIVAAGVILATGWTPIDPLLSIFVAVIILKSAWGIVKSSAHILLEGTPEGMSLADIKADLERHVPEVADAHHIHAWSITGERHLLTLHVHPAPGAPSREVVAAVRRRLTERFNIEHVTVQVEEDACLDASTGEAGQAGKKCH

Samples

Sample ID Description Type Environment
1 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
2 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
3 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
4 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
5 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
6 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
7 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
8 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
9 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
10 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
11 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
12 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
13 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
14 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
15 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
16 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
17 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
18 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
19 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
20 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
21 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
22 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
23 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
24 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
25 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
26 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
27 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
28 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
29 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
30 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
31 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
32 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
39 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
40 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
41 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
42 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
43 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
44 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
45 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
46 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
47 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
48 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
49 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
50 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
51 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
52 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
53 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
54 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
55 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
56 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
57 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
58 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
59 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
60 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
61 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
62 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
63 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
64 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
65 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
66 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
67 3300044659 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2E Metagenome Unclassified
68 3300044666 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1E Metagenome Unclassified
69 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
70 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
71 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
72 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
73 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
74 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
75 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
76 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
77 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
78 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
79 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
80 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
81 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
95 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
96 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
97 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
98 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
99 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
100 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
101 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
102 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
103 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
104 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
107 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
108 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
109 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
110 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
111 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
112 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
113 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
114 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
115 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
116 2721755763 Pandoraea thiooxydans ATSB16 Isolate Rhizosphere
117 2600255067 Paraburkholderia kururiensis thiooxydans NBRC 107107 Isolate Unclassified
118 2881101125 Ramlibacter rhizophilus CCTCC AB2015357 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.81
Metatranscriptomes 1.6
Isolates 1.6

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.66
Nodule 0
Rhizoplane 0
Rhizosphere 94.68
Stem 0
Stem Tuber 0
Unclassified 1.6

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10069346 3300003316 Bacteria 17361
2 Ga0055529_1000842 3300003763 Bacteria 18017
3 Ga0070694_100205560 3300005444 Bacteria 1470
4 Ga0070679_100031237 3300005530 Bacteria 5260
5 Ga0070679_100533518 3300005530 Bacteria 1117
6 Ga0070665_100000048 3300005548 Bacteria 265077
7 Ga0070665_100441784 3300005548 Bacteria 1310
8 Ga0068856_100139175 3300005614 Bacteria 2434
9 Ga0068863_100010794 3300005841 Bacteria 8858
10 Ga0068858_100005691 3300005842 Bacteria 12182
11 Ga0068858_100014734 3300005842 Bacteria 7358
12 Ga0068858_100077831 3300005842 Bacteria 3081
13 Ga0081539_10135616 3300005985 Bacteria 1203
14 Ga0097621_100230350 3300006237 Bacteria 1617
15 Ga0068871_100202531 3300006358 Bacteria 1714
16 Ga0075428_100055735 3300006844 Bacteria 4331
17 Ga0075434_100048116 3300006871 Bacteria 4232
18 Ga0075436_100000944 3300006914 Bacteria 19444
19 Ga0105240_10009952 3300009093 Bacteria 13403
20 Ga0105240_10010826 3300009093 Bacteria 12773
21 Ga0105240_10116167 3300009093 Bacteria 3229
22 Ga0111539_10922839 3300009094 Bacteria 1015
23 Ga0105241_10071203 3300009174 Bacteria 2699
24 Ga0105242_10004156 3300009176 Bacteria 11273
25 Ga0105242_10161342 3300009176 Bacteria 1963
26 Ga0105248_10241290 3300009177 Bacteria 2034
27 Ga0157370_10008111 3300013104 Bacteria 11365
28 Ga0157369_10000138 3300013105 Bacteria 102776
29 Ga0157369_10010648 3300013105 Bacteria 10469
30 Ga0157374_10000148 3300013296 Bacteria 63753
31 Ga0163162_10306942 3300013306 Bacteria 1719
32 Ga0163162_10542630 3300013306 Bacteria 1291
33 Ga0157372_10006536 3300013307 Bacteria 12404
34 Ga0157375_10117116 3300013308 Bacteria 2769
35 Ga0182008_10077151 3300014497 Bacteria 1640
36 Ga0182006_1027116 3300015261 Bacteria 2340
37 Ga0206353_10716477 3300020082 Bacteria 5556
38 Ga0224712_10000170 3300022467 Bacteria 11208
39 Ga0209672_100589 3300025228 Bacteria 19308
40 Ga0209672_105915 3300025228 Bacteria 2048
41 Ga0209455_1000359 3300025272 Bacteria 42537
42 Ga0207695_10090011 3300025913 Bacteria 3084
43 Ga0207709_10257693 3300025935 Bacteria 1277
44 Ga0207711_10174957 3300025941 Bacteria 1949
45 Ga0207703_10003928 3300026035 Bacteria 12333
46 Ga0207641_10007852 3300026088 Bacteria 8857
47 Ga0268266_10000358 3300028379 Bacteria 70786
48 Ga0265334_10000837 3300028573 Bacteria 15365
49 Ga0265338_10006586 3300028800 Bacteria 14732
50 Ga0265330_10039058 3300031235 Bacteria 2109
51 Ga0265332_10011409 3300031238 Bacteria 3950
52 Ga0265328_10019610 3300031239 Bacteria 2595
53 Ga0265320_10108727 3300031240 Bacteria 1271
54 Ga0265316_10006662 3300031344 Bacteria 11001
55 Ga0307509_10000422 3300031507 Bacteria 71328
56 Ga0265313_10004620 3300031595 Bacteria 10444
57 Ga0316579_10000978 3300031691 Bacteria 10008
58 Ga0265342_10002161 3300031712 Bacteria 17328
59 Ga0316576_10038425 3300031727 Bacteria 3432
60 Ga0316577_10059402 3300031733 Bacteria 2134
61 Ga0307413_10129967 3300031824 Bacteria 1722
62 Ga0307410_10307647 3300031852 Bacteria 1253
63 Ga0316593_10028331 3300032168 Bacteria 1804
64 Ga0316574_0035872 3300035398 Bacteria 3033
65 Ga0316574_0084652 3300035398 Bacteria 2017
66 Ga0316582_0017898 3300036647 Bacteria 4110
67 Ga0316582_0049465 3300036647 Bacteria 2659
68 Ga0316582_0281248 3300036647 Bacteria 1142
69 Ga0316584_0006249 3300036712 Bacteria 8070
70 Ga0316584_0070595 3300036712 Bacteria 2618
71 Ga0316584_0144006 3300036712 Bacteria 1776
72 Ga0395899_0091457 3300037312 Bacteria 2205
73 Ga0395900_0000167 3300037418 Bacteria 106898
74 Ga0395900_0048567 3300037418 Bacteria 4372
75 Ga0395900_0117711 3300037418 Bacteria 2726
76 Ga0395900_0294348 3300037418 Bacteria 1611
77 Ga0395898_0042267 3300037466 Bacteria 4498
78 Ga0316581_0025886 3300037588 Bacteria 1747
79 Ga0395901_0000087 3300038443 Bacteria 125110
80 Ga0395901_0000347 3300038443 Bacteria 56485
81 Ga0395901_0210946 3300038443 Bacteria 2033
82 Ga0436360_0123616 3300039438 Bacteria 2931
83 Ga0450906_015800 3300042145 Unclassified 1371
84 Ga0451577_0125464 3300042876 Bacteria 2300
85 Ga0466969_0009109 3300044656 Bacteria 5263
86 Ga0466969_0025319 3300044656 Bacteria 3051
87 Ga0466969_0028290 3300044656 Bacteria 2866
88 Ga0466972_0007400 3300044658 Bacteria 5518
89 Ga0466973_0005562 3300044659 Bacteria 10902
90 Ga0466977_0000069 3300044666 Bacteria 19753
91 Ga0466965_0011074 3300044683 Bacteria 4217
92 Ga0466966_0000712 3300044684 Bacteria 21100
93 Ga0466966_0003621 3300044684 Bacteria 10194
94 Ga0466966_0099324 3300044684 Bacteria 1801
95 Ga0466961_0000327 3300044693 Bacteria 31367
96 Ga0466961_0008659 3300044693 Bacteria 6485
97 Ga0466963_0000069 3300044694 Bacteria 35701
98 Ga0466963_0017440 3300044694 Bacteria 4476
99 Ga0466963_0346203 3300044694 Bacteria 1046
100 Ga0466964_0072158 3300044706 Bacteria 1462
101 Ga0466964_0131806 3300044706 Bacteria 1139
102 Ga0466968_0026623 3300044735 Bacteria 2375
103 Ga0466968_0105697 3300044735 Bacteria 1261
104 Ga0466970_0003995 3300044765 Bacteria 7236
105 Ga0466957_0003344 3300044842 Bacteria 8793
106 Ga0466957_0010295 3300044842 Bacteria 5360
107 Ga0466957_0012268 3300044842 Bacteria 4961
108 Ga0466959_0012802 3300045049 Bacteria 6068
109 Ga0466959_0072891 3300045049 Bacteria 2484
110 Ga0451576_0000402 3300045051 Bacteria 100964
111 Ga0451576_0488411 3300045051 Bacteria 1293
112 Ga0466958_0107313 3300045836 Bacteria 1741
113 Ga0495672_0033949 3300047320 Bacteria 3157
114 Ga0501031_0156915 3300049568 Bacteria 1487
115 Ga0501033_0004777 3300049570 Bacteria 10825
116 Ga0501033_0010909 3300049570 Bacteria 6965
117 Ga0501033_0037113 3300049570 Bacteria 3648
118 Ga0501033_0042181 3300049570 Bacteria 3402
119 Ga0501034_0407791 3300049571 Bacteria 1281
120 Ga0501036_0000821 3300049572 Bacteria 23039
121 Ga0501036_0043180 3300049572 Bacteria 3817
122 Ga0501036_0043675 3300049572 Bacteria 3796
123 Ga0501038_0017477 3300049574 Bacteria 6483
124 Ga0501038_0021569 3300049574 Bacteria 5780
125 Ga0501038_0063383 3300049574 Bacteria 3155
126 Ga0501039_0003151 3300049575 Bacteria 12342
127 Ga0501039_0024969 3300049575 Bacteria 4590
128 Ga0501040_0000564 3300049576 Bacteria 22466
129 Ga0501040_0011342 3300049576 Bacteria 5832
130 Ga0501041_0000842 3300049577 Bacteria 16480
131 Ga0501041_0018973 3300049577 Bacteria 4098
132 Ga0501042_0008962 3300049578 Bacteria 6641
133 Ga0501042_0134065 3300049578 Bacteria 1785
134 Ga0501043_0003053 3300049579 Bacteria 13905
135 Ga0501043_0004710 3300049579 Bacteria 11059
136 Ga0501043_0062404 3300049579 Bacteria 2926
137 Ga0501046_0005432 3300049580 Bacteria 11389
138 Ga0501046_0012174 3300049580 Bacteria 7333
139 Ga0501046_0058457 3300049580 Bacteria 3022
140 Ga0501047_0046982 3300049581 Bacteria 4171
141 Ga0501047_0225751 3300049581 Bacteria 1728
142 Ga0501048_0005511 3300049582 Bacteria 9632
143 Ga0501048_0019396 3300049582 Bacteria 4990
144 Ga0501048_0025269 3300049582 Bacteria 4329
145 Ga0501070_0271564 3300049586 Bacteria 1385
146 Ga0501071_0021103 3300049587 Bacteria 4535
147 Ga0501072_0001375 3300049588 Bacteria 18270
148 Ga0501072_0048021 3300049588 Bacteria 3361
149 Ga0501073_0097149 3300049589 Bacteria 2046
150 Ga0501075_0000231 3300049591 Bacteria 29873
151 Ga0501075_0027851 3300049591 Bacteria 4166
152 Ga0501075_0277028 3300049591 Unclassified 1278
153 Ga0501076_0000329 3300049592 Bacteria 29383
154 Ga0501076_0031726 3300049592 Bacteria 4123
155 Ga0501077_0004510 3300049593 Bacteria 8463
156 Ga0501077_0138443 3300049593 Bacteria 1543
157 Ga0501079_0002287 3300049741 Bacteria 13844
158 Ga0501079_0013434 3300049741 Bacteria 6245
159 Ga0501080_0003830 3300049742 Bacteria 13287
160 Ga0501080_0029800 3300049742 Bacteria 5079
161 Ga0501080_0091775 3300049742 Bacteria 2821
162 Ga0501081_0000192 3300049743 Bacteria 29549
163 Ga0501081_0008356 3300049743 Bacteria 6720
164 Ga0501035_0012629 3300049822 Bacteria 7804
165 Ga0501035_0012832 3300049822 Bacteria 7738
166 Ga0501035_0023527 3300049822 Bacteria 5652
167 Ga0501044_0000183 3300049823 Bacteria 77954
168 Ga0501044_0042200 3300049823 Bacteria 4746
169 Ga0501044_0178670 3300049823 Bacteria 2090
170 Ga0501045_0000827 3300049824 Bacteria 20036
171 Ga0501045_0040392 3300049824 Bacteria 3395
172 nmdc:mga06r32_697360_c1 3300050510 Bacteria 981
173 nmdc:mga0n895_48020_c1 3300050512 Bacteria 4176
174 nmdc:mga0rr50_258611_c1 3300050513 Bacteria 1448
175 nmdc:mga08x19_106948_c1 3300050514 Bacteria 1862
176 Ga0500622_0019254 3300053156 Bacteria 3626
177 Ga0501084_0000340 3300054114 Bacteria 35562
178 Ga0501084_0081323 3300054114 Bacteria 2717
179 Ga0501082_0001171 3300060353 Bacteria 23037
180 Ga0501082_0012735 3300060353 Bacteria 7228
181 Ga0501082_0133984 3300060353 Unclassified 2150
182 Ga0466962_0000474 3300061719 Bacteria 17440
183 Ga0466962_0010352 3300061719 Bacteria 4481
184 Ga0530510_0000793 3300061734 Bacteria 20595
185 Ga0530510_0013837 3300061734 Bacteria 5681
186 2723878146 2721755763 Bacteria 4464185
187 2600812378 2600255067 Bacteria 6795583
188 2881101733 2881101125 Bacteria 4590519
189 rootH1_10069346
190 Ga0055529_1000842
191 Ga0070694_100205560
192 Ga0070679_100031237
193 Ga0070679_100533518
194 Ga0070665_100000048
195 Ga0070665_100441784
196 Ga0068856_100139175
197 Ga0068863_100010794
198 Ga0068858_100005691
199 Ga0068858_100014734
200 Ga0068858_100077831
201 Ga0081539_10135616
202 Ga0097621_100230350
203 Ga0068871_100202531
204 Ga0075428_100055735
205 Ga0075434_100048116
206 Ga0075436_100000944
207 Ga0105240_10009952
208 Ga0105240_10010826
209 Ga0105240_10116167
210 Ga0111539_10922839
211 Ga0105241_10071203
212 Ga0105242_10004156
213 Ga0105242_10161342
214 Ga0105248_10241290
215 Ga0157370_10008111
216 Ga0157369_10000138
217 Ga0157369_10010648
218 Ga0157374_10000148
219 Ga0163162_10306942
220 Ga0163162_10542630
221 Ga0157372_10006536
222 Ga0157375_10117116
223 Ga0182008_10077151
224 Ga0182006_1027116
225 Ga0206353_10716477
226 Ga0224712_10000170
227 Ga0209672_100589
228 Ga0209672_105915
229 Ga0209455_1000359
230 Ga0207695_10090011
231 Ga0207709_10257693
232 Ga0207711_10174957
233 Ga0207703_10003928
234 Ga0207641_10007852
235 Ga0268266_10000358
236 Ga0265334_10000837
237 Ga0265338_10006586
238 Ga0265330_10039058
239 Ga0265332_10011409
240 Ga0265328_10019610
241 Ga0265320_10108727
242 Ga0265316_10006662
243 Ga0307509_10000422
244 Ga0265313_10004620
245 Ga0316579_10000978
246 Ga0265342_10002161
247 Ga0316576_10038425
248 Ga0316577_10059402
249 Ga0307413_10129967
250 Ga0307410_10307647
251 Ga0316593_10028331
252 Ga0316574_0035872
253 Ga0316574_0084652
254 Ga0316582_0017898
255 Ga0316582_0049465
256 Ga0316582_0281248
257 Ga0316584_0006249
258 Ga0316584_0070595
259 Ga0316584_0144006
260 Ga0395899_0091457
261 Ga0395900_0000167
262 Ga0395900_0048567
263 Ga0395900_0117711
264 Ga0395900_0294348
265 Ga0395898_0042267
266 Ga0316581_0025886
267 Ga0395901_0000087
268 Ga0395901_0000347
269 Ga0395901_0210946
270 Ga0436360_0123616
271 Ga0450906_015800
272 Ga0451577_0125464
273 Ga0466969_0009109
274 Ga0466969_0025319
275 Ga0466969_0028290
276 Ga0466972_0007400
277 Ga0466973_0005562
278 Ga0466977_0000069
279 Ga0466965_0011074
280 Ga0466966_0000712
281 Ga0466966_0003621
282 Ga0466966_0099324
283 Ga0466961_0000327
284 Ga0466961_0008659
285 Ga0466963_0000069
286 Ga0466963_0017440
287 Ga0466963_0346203
288 Ga0466964_0072158
289 Ga0466964_0131806
290 Ga0466968_0026623
291 Ga0466968_0105697
292 Ga0466970_0003995
293 Ga0466957_0003344
294 Ga0466957_0010295
295 Ga0466957_0012268
296 Ga0466959_0012802
297 Ga0466959_0072891
298 Ga0451576_0000402
299 Ga0451576_0488411
300 Ga0466958_0107313
301 Ga0495672_0033949
302 Ga0501031_0156915
303 Ga0501033_0004777
304 Ga0501033_0010909
305 Ga0501033_0037113
306 Ga0501033_0042181
307 Ga0501034_0407791
308 Ga0501036_0000821
309 Ga0501036_0043180
310 Ga0501036_0043675
311 Ga0501038_0017477
312 Ga0501038_0021569
313 Ga0501038_0063383
314 Ga0501039_0003151
315 Ga0501039_0024969
316 Ga0501040_0000564
317 Ga0501040_0011342
318 Ga0501041_0000842
319 Ga0501041_0018973
320 Ga0501042_0008962
321 Ga0501042_0134065
322 Ga0501043_0003053
323 Ga0501043_0004710
324 Ga0501043_0062404
325 Ga0501046_0005432
326 Ga0501046_0012174
327 Ga0501046_0058457
328 Ga0501047_0046982
329 Ga0501047_0225751
330 Ga0501048_0005511
331 Ga0501048_0019396
332 Ga0501048_0025269
333 Ga0501070_0271564
334 Ga0501071_0021103
335 Ga0501072_0001375
336 Ga0501072_0048021
337 Ga0501073_0097149
338 Ga0501075_0000231
339 Ga0501075_0027851
340 Ga0501075_0277028
341 Ga0501076_0000329
342 Ga0501076_0031726
343 Ga0501077_0004510
344 Ga0501077_0138443
345 Ga0501079_0002287
346 Ga0501079_0013434
347 Ga0501080_0003830
348 Ga0501080_0029800
349 Ga0501080_0091775
350 Ga0501081_0000192
351 Ga0501081_0008356
352 Ga0501035_0012629
353 Ga0501035_0012832
354 Ga0501035_0023527
355 Ga0501044_0000183
356 Ga0501044_0042200
357 Ga0501044_0178670
358 Ga0501045_0000827
359 Ga0501045_0040392
360 nmdc:mga06r32_697360_c1
361 nmdc:mga0n895_48020_c1
362 nmdc:mga0rr50_258611_c1
363 nmdc:mga08x19_106948_c1
364 Ga0500622_0019254
365 Ga0501084_0000340
366 Ga0501084_0081323
367 Ga0501082_0001171
368 Ga0501082_0012735
369 Ga0501082_0133984
370 Ga0466962_0000474
371 Ga0466962_0010352
372 Ga0530510_0000793
373 Ga0530510_0013837
374 2723878146
375 2600812378
376 2881101733

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01545

Cation_efflux

Cation efflux family

52

241

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
6vd8-assembly1.cif.gz_B-2 metal-bound c-terminal domain of czcd transporter from pseudomonas aeruginosa 0.8622 199 274
6vd9-assembly2.cif.gz_B metal-bound c-terminal domain of the czcd transporter from cuprividus metallidurans 0.8537 199 270
6vd8-assembly1.cif.gz_B-2 metal-bound c-terminal domain of czcd transporter from pseudomonas aeruginosa 0.8331 199 274
6vd9-assembly2.cif.gz_B metal-bound c-terminal domain of the czcd transporter from cuprividus metallidurans 0.8331 199 270
6vd8-assembly1.cif.gz_A metal-bound c-terminal domain of czcd transporter from pseudomonas aeruginosa 0.818 191 274
ID Description Score Start End Superfamily
af_Q6DBM8_296_375_3.30.70.1350 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Cation efflux protein, cytoplasmic domain 0.9349 192 270 3.30.70.1350
af_Q4DAP4_369_464_3.30.70.1350 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Cation efflux protein, cytoplasmic domain 0.9075 192 270 3.30.70.1350
af_Q9VKA3_337_568_1.20.1510.10 Mainly Alpha;Up-down Bundle;Alpha-lytic protease prodomain-like;Cation efflux protein transmembrane domain 0.9037 15 174 1.20.1510.10
af_Q6DBM8_296_375_3.30.70.1350 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Cation efflux protein, cytoplasmic domain 0.9024 192 270 3.30.70.1350
af_Q9ZT63_320_398_3.30.70.1350 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Cation efflux protein, cytoplasmic domain 0.9024 192 270 3.30.70.1350
ID Description Score Start End GO Terms
AF-A0A356NAU6-F1-model_v4 Cation transporter 0.9242 6 173 GO:0008324
GO:0016020
AF-A0A2V7WW56-F1-model_v4 Cation transporter 0.9237 193 270 GO:0005385
GO:0005886
AF-A0A7Y2T5M2-F1-model_v4 Cation transporter 0.9228 1 176 GO:0008324
GO:0016020
AF-A0A2H0PKG2-F1-model_v4 Cation transporter 0.9226 15 176 GO:0008324
GO:0016020
AF-C3BIN8-F1-model_v4 deleted 0.9057 201 270

Map