F290013

General Info

Members Datasets Scaffolds Average Seq Length
188 148 131 358

Family's Representative Sequence

Representative Sequence 3300049581|Ga0501047_0025199|Ga0501047_0025199_1002_2177
Length 391
Sequence VSESLVDQAGTAPEAVTVRGDAPYDVLIGRHLLGELPRVLGPDVRRVLVVHQPSLTASAEVVRDDLEASGYQAFLAEVPDAEEAKSAQVAAFLWGVLGQADFTRSDAIVGVGGGATTDLAGFVAATWLRGIRVVHVPTTLLAMVDAAVGGKTGINTAEGKNLVGAFYPPAGVLADLATLESLPRFEFVAGLAEVVKTGFIADPRILELVEAHAAELRDWGSWEATGGEPSAELRAVVAELVRRSVAVKAAVVGEDLKESGLREILNSGHTLGHAIELAERYGWRHGAAVSVGMVFAAELSRLAGKLDDDVVDRHRSILSSLGLPTTYRGDRWDQLLGAMRRDKKTRGDLLRFVVLDDVARPTRLEGPDPALLQAAYAEISADAPSSRTISL

Samples

Sample ID Description Type Environment
1 2527291627 Frankia casuarinae Thr Isolate Nodule
2 2527291629 Frankia sp. BMG5.23 Isolate Nodule
3 2546825537 Frankia sp. CcI6 Isolate Rhizoplane
4 2576861822 Frankia sp. CeD Isolate Nodule
5 2579778521 Frankia torreyi CpI1-S Isolate Unclassified
6 2619618881 Frankia sp. ACN1ag Isolate Unclassified
7 2619619003 Frankia sp. CpI1-P Isolate Nodule
8 2626541554 Frankia sp. AvcI.1 Isolate Nodule
9 2643221549 Agromyces sp. Root1464 Isolate Unclassified
10 2643221575 Microbacterium sp. Root61 Isolate Unclassified
11 2643221613 Oerskovia sp. Root22 Isolate Unclassified
12 2643221721 Oerskovia sp. Root918 Isolate Unclassified
13 2710264753 Frankia sp. KB5 Isolate Nodule
14 2728369276 Kineococcus rhizosphaerae DSM 19711 Isolate Rhizosphere
15 2738541272 Promicromonospora sp. AC04 Isolate Unclassified
16 2738543027 Promicromonospora sp. CF082 Isolate Unclassified
17 2739367654 Promicromonospora sp. YR516 Isolate Unclassified
18 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
19 2758568522 Promicromonospora thailandica SAI-039 Isolate Unclassified
20 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
21 2773857924 Frankia sp. CgIS1 Isolate Nodule
22 2808606394 Promicromonospora sp. C35 Isolate Unclassified
23 2835188231 Isoptericola variabilis JZ7 Isolate Unclassified
24 2839986021 Cellulosimicrobium cellulans JZ5 Isolate Unclassified
25 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
26 2844852863 Herbiconiux flava DSM 26474 Isolate Rhizosphere
27 2852643534 Leifsonia sp. AK011 Isolate Rhizosphere
28 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
29 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
30 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
31 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
32 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
33 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
34 2908674828 Curtobacterium sp. 1517 Isolate Rhizosphere
35 2909074476 Curtobacterium sp. 1310 Isolate Rhizosphere
36 2919039151 Curtobacterium sp. 260 Isolate Rhizosphere
37 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
38 2919446982 Phycicoccus sp. 3266 Isolate Rhizosphere
39 2928153084 Leifsonia sp. 563 Isolate Unclassified
40 2928500415 Curtobacterium oceanosedimentum 1257 Isolate Rhizosphere
41 2932431166 Cellulosimicrobium sp. 4261 Isolate Rhizosphere
42 2935890801 Oerskovia enterophila 3230 Isolate Rhizosphere
43 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
44 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
45 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
46 2966921586 Rathayibacter agropyri 617 Isolate Rhizosphere
47 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
48 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
49 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
50 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
51 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
52 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
53 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
54 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
55 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
56 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
57 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
58 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
59 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
60 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
61 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
62 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
63 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
64 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
65 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
66 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
67 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
68 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
69 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
70 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
75 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
77 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
78 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
83 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
84 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
85 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
86 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
87 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
88 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
89 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
90 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
91 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
92 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
93 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
94 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
95 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
96 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
97 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
98 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
99 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
100 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
101 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
102 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
103 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
104 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
105 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
106 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
107 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
108 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
109 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
110 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
111 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
112 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
121 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
122 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
123 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
124 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
126 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
127 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
128 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
129 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
130 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
131 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
132 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
133 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
134 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
135 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
136 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
137 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
138 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
139 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
140 637000116 Frankia casuarinae CcI3 Isolate Nodule
141 8002811521 Leucobacter chinensis NC76-1 Isolate Rhizosphere
142 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
143 8046352972 Agromyces mangrovi NBRC 112812 Isolate Rhizosphere
144 8054913762 Frankia gtarii Agncl-10 Isolate Nodule
145 8054920844 Frankia tisae Agncl-8 Isolate Nodule
146 8055157932 Frankia umida Ag45/Mut15 Isolate Nodule
147 8056037122 Herbiconiux gentiana CPCC 205716 Isolate Rhizosphere
148 8056579771 Promicromonospora iranensis UTMC 00792 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 68.09
Metatranscriptomes 1.6
Isolates 30.32

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 20.74
Nodule 5.85
Rhizoplane 4.26
Rhizosphere 48.4
Stem 0
Stem Tuber 0
Unclassified 20.74

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10002346 3300002067 Bacteria 6599
2 Ga0006562J51391_1083570 3300003578 Bacteria 3480
3 Ga0006562J51391_1083572 3300003578 Bacteria 2924
4 Ga0055539_1000008 3300003752 Bacteria 537665
5 Ga0055533_1000001 3300003756 Bacteria 1863437
6 Ga0055525_1000800 3300003759 Bacteria 9895
7 Ga0055527_1000001 3300003760 Bacteria 850044
8 Ga0055529_1000018 3300003763 Bacteria 344344
9 Ga0055541_1001492 3300003841 Bacteria 5041
10 Ga0065714_10088637 3300005288 Bacteria 2009
11 Ga0070682_100146391 3300005337 Bacteria 1616
12 Ga0070667_100046011 3300005367 Bacteria 3670
13 Ga0070710_10015993 3300005437 Bacteria 3808
14 Ga0070696_100026566 3300005546 Bacteria 3938
15 Ga0075364_10011930 3300006051 Bacteria 5296
16 Ga0105251_10074254 3300009011 Bacteria 1579
17 Ga0105247_10000164 3300009101 Bacteria 64953
18 Ga0105248_10016800 3300009177 Bacteria 8057
19 Ga0157370_10245215 3300013104 Bacteria 1657
20 Ga0157369_10010710 3300013105 Bacteria 10436
21 Ga0157369_10017568 3300013105 Bacteria 8039
22 Ga0157369_10205447 3300013105 Bacteria 2066
23 Ga0157369_10442071 3300013105 Bacteria 1347
24 Ga0157372_10407616 3300013307 Bacteria 1584
25 Ga0157379_10041960 3300014968 Bacteria 4083
26 Ga0206354_11338255 3300020081 Bacteria 2338
27 Ga0209566_100050 3300025225 Bacteria 234653
28 Ga0209674_100001 3300025226 Bacteria 4013750
29 Ga0209672_100006 3300025228 Bacteria 1004497
30 Ga0209147_100486 3300025229 Bacteria 23814
31 Ga0209563_100001 3300025230 Bacteria 4013775
32 Ga0209258_101984 3300025242 Bacteria 5937
33 Ga0209677_100001 3300025253 Bacteria 4013787
34 Ga0209677_100187 3300025253 Bacteria 50389
35 Ga0209148_1000015 3300025254 Bacteria 850103
36 Ga0209455_1000013 3300025272 Bacteria 850103
37 Ga0209455_1006667 3300025272 Bacteria 3379
38 Ga0207710_10000178 3300025900 Bacteria 64962
39 Ga0207705_10237601 3300025909 Bacteria 1387
40 Ga0207711_10053307 3300025941 Bacteria 3469
41 Ga0307514_10005788 3300031649 Bacteria 10919
42 Ga0307410_10001269 3300031852 Bacteria 11227
43 Ga0307409_100005618 3300031995 Bacteria 7253
44 Ga0307409_100453089 3300031995 Bacteria 1239
45 Ga0395899_0008073 3300037312 Bacteria 8106
46 Ga0395899_0016290 3300037312 Bacteria 5666
47 Ga0395900_0024033 3300037418 Bacteria 6235
48 Ga0395901_0018977 3300038443 Bacteria 7031
49 Ga0466965_0000005 3300044683 Bacteria 185168
50 Ga0466966_0100464 3300044684 Bacteria 1789
51 Ga0466961_0038827 3300044693 Bacteria 3053
52 Ga0466971_0037566 3300044719 Bacteria 2171
53 Ga0466968_0018110 3300044735 Bacteria 2823
54 Ga0466968_0084451 3300044735 Bacteria 1399
55 Ga0466970_0002817 3300044765 Bacteria 8394
56 Ga0466970_0012124 3300044765 Bacteria 4401
57 Ga0466970_0025384 3300044765 Bacteria 3102
58 Ga0466970_0027387 3300044765 Bacteria 2991
59 Ga0466970_0042255 3300044765 Bacteria 2424
60 Ga0466957_0044986 3300044842 Bacteria 2676
61 Ga0466960_0063297 3300044901 Bacteria 1820
62 Ga0495672_0006618 3300047320 Bacteria 8920
63 Ga0495672_0033314 3300047320 Bacteria 3192
64 Ga0496101_0043514 3300048904 Bacteria 3209
65 Ga0496104_0026280 3300048907 Bacteria 5373
66 Ga0496104_0263726 3300048907 Bacteria 1635
67 Ga0496105_0073518 3300048908 Bacteria 2824
68 Ga0496107_0111133 3300048910 Bacteria 2014
69 Ga0496114_0023550 3300048917 Bacteria 5025
70 Ga0496115_0060684 3300048918 Bacteria 3047
71 Ga0496117_0012164 3300048920 Bacteria 7621
72 Ga0496117_0018386 3300048920 Bacteria 5789
73 Ga0496118_0017452 3300048921 Bacteria 6533
74 Ga0496119_0000375 3300048922 Bacteria 61774
75 Ga0496120_0000453 3300048923 Bacteria 64868
76 Ga0496122_0000403 3300048925 Bacteria 91680
77 Ga0496122_0004129 3300048925 Bacteria 18364
78 Ga0496122_0004482 3300048925 Bacteria 17265
79 Ga0496123_0000510 3300048926 Bacteria 67563
80 Ga0496123_0004022 3300048926 Bacteria 15889
81 Ga0496123_0011292 3300048926 Bacteria 7762
82 Ga0496124_0000205 3300048927 Bacteria 116897
83 Ga0496124_0008033 3300048927 Bacteria 11096
84 Ga0496124_0039984 3300048927 Bacteria 4060
85 Ga0496125_0002017 3300048928 Bacteria 27504
86 Ga0496125_0019346 3300048928 Bacteria 6426
87 Ga0496126_0033783 3300048929 Bacteria 4811
88 Ga0501031_0030793 3300049568 Bacteria 3500
89 Ga0501032_0009098 3300049569 Bacteria 7210
90 Ga0501032_0016609 3300049569 Bacteria 5175
91 Ga0501032_0117982 3300049569 Bacteria 1755
92 Ga0501034_0016760 3300049571 Bacteria 7512
93 Ga0501034_0039791 3300049571 Bacteria 4761
94 Ga0501034_0050471 3300049571 Bacteria 4196
95 Ga0501034_0103525 3300049571 Bacteria 2840
96 Ga0501036_0075862 3300049572 Bacteria 2843
97 Ga0501037_0145264 3300049573 Bacteria 1697
98 Ga0501038_0003910 3300049574 Bacteria 13856
99 Ga0501039_0118042 3300049575 Bacteria 2078
100 Ga0501047_0025199 3300049581 Bacteria 5715
101 Ga0501070_0031788 3300049586 Bacteria 4422
102 Ga0501070_0044152 3300049586 Bacteria 3709
103 Ga0501073_0000029 3300049589 Bacteria 117147
104 Ga0501080_0075558 3300049742 Bacteria 3134
105 Ga0501035_0005688 3300049822 Bacteria 11765
106 Ga0501035_0038886 3300049822 Bacteria 4307
107 Ga0501044_0001379 3300049823 Bacteria 28508
108 Ga0501044_0224415 3300049823 Bacteria 1828
109 Ga0501045_0294010 3300049824 Bacteria 1209
110 nmdc:mga00v17_2023_c2 3300050491 Bacteria 10008
111 nmdc:mga0yw44_6589_c1 3300050492 Bacteria 5624
112 Ga0500635_0000012 3300053080 Bacteria 138781
113 Ga0500643_001145 3300053087 Bacteria 15845
114 Ga0500556_0000001 3300053104 Bacteria 1135060
115 Ga0500556_0000141 3300053104 Bacteria 59919
116 Ga0500562_001500 3300053108 Bacteria 5764
117 Ga0500593_001803 3300053117 Bacteria 7696
118 Ga0500559_0000194 3300053136 Bacteria 48792
119 Ga0500559_0000264 3300053136 Bacteria 40984
120 Ga0500568_0000006 3300053139 Bacteria 522235
121 Ga0500568_0000064 3300053139 Bacteria 106056
122 Ga0500573_0000017 3300053140 Bacteria 181426
123 Ga0500573_0010789 3300053140 Bacteria 5105
124 Ga0500573_0027275 3300053140 Bacteria 3284
125 Ga0500573_0031375 3300053140 Bacteria 3066
126 Ga0500573_0057901 3300053140 Bacteria 2222
127 Ga0500577_0005489 3300053142 Bacteria 3423
128 Ga0500577_0020102 3300053142 Bacteria 2178
129 Ga0500616_0026369 3300053153 Bacteria 3218
130 Ga0500645_005776 3300053730 Bacteria 4502
131 Ga0466962_0016187 3300061719 Bacteria 3597

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300031995 Ga0307409_100453089 Ga0307409_1004530892 316
2 3300005546 Ga0070696_100026566 Ga0070696_1000265661 320
3 3300049572 Ga0501036_0075862 Ga0501036_0075862_1752_2768 328
4 iso_pu_bacteria 2527291629 2528215010 340
5 iso_pu_bacteria 2546825537 2546950290 340
6 iso_pu_bacteria 2773857924 2774866141 340
7 3300005288 Ga0065714_10088637 Ga0065714_100886372 341
8 3300013105 Ga0157369_10010710 Ga0157369_100107102 341
9 iso_pu_bacteria 2852677369 2852679349 341
10 3300013104 Ga0157370_10245215 Ga0157370_102452151 342
11 iso_pu_bacteria 2710264753 2710603772 342
12 iso_pu_bacteria 637000116 637880531 342
13 3300009011 Ga0105251_10074254 Ga0105251_100742541 343
14 3300009101 Ga0105247_10000164 Ga0105247_1000016442 343
15 3300009177 Ga0105248_10016800 Ga0105248_100168003 343
16 3300014968 Ga0157379_10041960 Ga0157379_100419603 343
17 3300025900 Ga0207710_10000178 Ga0207710_1000017843 343
18 3300025941 Ga0207711_10053307 Ga0207711_100533074 343
19 3300048907 Ga0496104_0263726 Ga0496104_0263726_480_1589 343
20 3300048922 Ga0496119_0000375 Ga0496119_0000375_12452_13561 343
21 3300048923 Ga0496120_0000453 Ga0496120_0000453_15546_16655 343
22 iso_pu_bacteria 2527291627 2528205930 343
23 iso_pu_bacteria 2576861822 2579750206 343
24 iso_pu_bacteria 2579778521 2579856431 343
25 iso_pu_bacteria 2619618881 2619858123 343
26 iso_pu_bacteria 2619619003 2620352572 343
27 iso_pu_bacteria 2626541554 2626639625 343
28 iso_pu_bacteria 8054913762 8054914761 343
29 iso_pu_bacteria 8054920844 8054923138 343
30 iso_pu_bacteria 8055157932 8055160861 343
31 iso_pu_bacteria 2643221575 2643885546 344
32 iso_pu_bacteria 2835188231 2835190044 344
33 iso_pu_bacteria 2852643534 2852645503 344
34 iso_pu_bacteria 2870622029 2870623590 344
35 iso_pu_bacteria 2906799679 2906802951 344
36 iso_pu_bacteria 2919446982 2919450639 344
37 iso_pu_bacteria 2939657138 2939658029 344
38 iso_pu_bacteria 2939660829 2939661101 344
39 iso_pu_bacteria 8002811521 8002811877 344
40 iso_pu_bacteria 8004212874 8004214214 344
41 3300031852 Ga0307410_10001269 Ga0307410_100012698 345
42 3300031995 Ga0307409_100005618 Ga0307409_1000056183 345
43 3300048920 Ga0496117_0018386 Ga0496117_0018386_4539_5624 345
44 3300048921 Ga0496118_0017452 Ga0496118_0017452_3410_4495 345
45 3300049569 Ga0501032_0117982 Ga0501032_0117982_462_1562 345
46 3300049586 Ga0501070_0044152 Ga0501070_0044152_261_1328 345
47 3300049824 Ga0501045_0294010 Ga0501045_0294010_81_1181 345
48 iso_pu_bacteria 2728369276 2729904909 345
49 iso_pu_bacteria 2844841374 2844842602 345
50 iso_pu_bacteria 2844852863 2844855535 345
51 iso_pu_bacteria 2919055335 2919058286 345
52 iso_pu_bacteria 2928153084 2928156417 345
53 iso_pu_bacteria 2966921586 2966923255 345
54 iso_pu_bacteria 8046352972 8046352990 345
55 iso_pu_bacteria 8046352972 8046356497 345
56 iso_pu_bacteria 8056037122 8056037471 345
57 3300044735 Ga0466968_0084451 Ga0466968_0084451_141_1220 346
58 3300044765 Ga0466970_0012124 Ga0466970_0012124_2785_3864 346
59 3300044765 Ga0466970_0027387 Ga0466970_0027387_735_1814 346
60 3300044842 Ga0466957_0044986 Ga0466957_0044986_660_1739 346
61 3300048908 Ga0496105_0073518 Ga0496105_0073518_951_2039 346
62 3300048918 Ga0496115_0060684 Ga0496115_0060684_1088_2176 346
63 3300048920 Ga0496117_0012164 Ga0496117_0012164_5886_6965 346
64 3300048925 Ga0496122_0004129 Ga0496122_0004129_5555_6625 346
65 3300048926 Ga0496123_0004022 Ga0496123_0004022_13489_14559 346
66 iso_pu_bacteria 2738541272 2738695668 346
67 iso_pu_bacteria 2738543027 2739326188 346
68 iso_pu_bacteria 2739367654 2739604969 346
69 iso_pu_bacteria 2758568522 2760308122 346
70 iso_pu_bacteria 2758568621 2760623286 346
71 iso_pu_bacteria 2808606394 2809028176 346
72 iso_pu_bacteria 8056579771 8056582209 346
73 3300005367 Ga0070667_100046011 Ga0070667_1000460113 347
74 3300038443 Ga0395901_0018977 Ga0395901_0018977_5661_6743 347
75 3300048925 Ga0496122_0000403 Ga0496122_0000403_9925_11046 347
76 3300048926 Ga0496123_0000510 Ga0496123_0000510_64653_65774 347
77 3300048927 Ga0496124_0000205 Ga0496124_0000205_52626_53747 347
78 3300048928 Ga0496125_0002017 Ga0496125_0002017_8062_9186 347
79 3300053136 Ga0500559_0000194 Ga0500559_0000194_15861_16934 347
80 3300053140 Ga0500573_0000017 Ga0500573_0000017_7650_8723 347
81 iso_pu_bacteria 2643221549 2643767828 347
82 3300005437 Ga0070710_10015993 Ga0070710_100159932 348
83 3300031649 Ga0307514_10005788 Ga0307514_100057883 348
84 3300044683 Ga0466965_0000005 Ga0466965_0000005_82988_84073 348
85 3300048925 Ga0496122_0004482 Ga0496122_0004482_9160_10236 348
86 3300048926 Ga0496123_0011292 Ga0496123_0011292_1884_2960 348
87 3300048928 Ga0496125_0019346 Ga0496125_0019346_4919_5995 348
88 3300049568 Ga0501031_0030793 Ga0501031_0030793_1613_2698 348
89 3300049569 Ga0501032_0009098 Ga0501032_0009098_5349_6434 348
90 3300049569 Ga0501032_0016609 Ga0501032_0016609_2585_3670 348
91 3300049571 Ga0501034_0050471 Ga0501034_0050471_2203_3288 348
92 3300049571 Ga0501034_0103525 Ga0501034_0103525_1598_2683 348
93 3300049573 Ga0501037_0145264 Ga0501037_0145264_178_1263 348
94 3300049574 Ga0501038_0003910 Ga0501038_0003910_12470_13555 348
95 3300049575 Ga0501039_0118042 Ga0501039_0118042_911_1996 348
96 3300049823 Ga0501044_0224415 Ga0501044_0224415_550_1635 348
97 3300053087 Ga0500643_001145 Ga0500643_001145_8525_9601 348
98 3300053104 Ga0500556_0000001 Ga0500556_0000001_305755_306831 348
99 3300053139 Ga0500568_0000006 Ga0500568_0000006_428034_429110 348
100 3300053140 Ga0500573_0057901 Ga0500573_0057901_637_1728 348
101 3300053142 Ga0500577_0005489 Ga0500577_0005489_84_1160 348
102 3300053142 Ga0500577_0020102 Ga0500577_0020102_557_1633 348
103 iso_pu_bacteria 2862993130 2862996343 348
104 3300002067 JGI24735J21928_10002346 JGI24735J21928_100023465 349
105 3300003578 Ga0006562J51391_1083570 Ga0006562J51391_10835702 349
106 3300003578 Ga0006562J51391_1083572 Ga0006562J51391_10835724 349
107 3300003752 Ga0055539_1000008 Ga0055539_1000008134 349
108 3300003756 Ga0055533_1000001 Ga0055533_1000001937 349
109 3300003759 Ga0055525_1000800 Ga0055525_10008009 349
110 3300003760 Ga0055527_1000001 Ga0055527_1000001405 349
111 3300003763 Ga0055529_1000018 Ga0055529_100001891 349
112 3300003841 Ga0055541_1001492 Ga0055541_10014923 349
113 3300005337 Ga0070682_100146391 Ga0070682_1001463912 349
114 3300006051 Ga0075364_10011930 Ga0075364_100119302 349
115 3300013105 Ga0157369_10017568 Ga0157369_100175688 349
116 3300013105 Ga0157369_10205447 Ga0157369_102054471 349
117 3300013105 Ga0157369_10442071 Ga0157369_104420712 349
118 3300013307 Ga0157372_10407616 Ga0157372_104076162 349
119 3300020081 Ga0206354_11338255 Ga0206354_113382552 349
120 3300025225 Ga0209566_100050 Ga0209566_10005051 349
121 3300025226 Ga0209674_100001 Ga0209674_100001937 349
122 3300025228 Ga0209672_100006 Ga0209672_100006571 349
123 3300025229 Ga0209147_100486 Ga0209147_10048618 349
124 3300025230 Ga0209563_100001 Ga0209563_100001937 349
125 3300025242 Ga0209258_101984 Ga0209258_1019845 349
126 3300025253 Ga0209677_100001 Ga0209677_100001937 349
127 3300025253 Ga0209677_100187 Ga0209677_10018747 349
128 3300025254 Ga0209148_1000015 Ga0209148_1000015415 349
129 3300025272 Ga0209455_1000013 Ga0209455_1000013415 349
130 3300025272 Ga0209455_1006667 Ga0209455_10066673 349
131 3300025909 Ga0207705_10237601 Ga0207705_102376012 349
132 3300037312 Ga0395899_0008073 Ga0395899_0008073_5355_6434 349
133 3300037312 Ga0395899_0016290 Ga0395899_0016290_4045_5124 349
134 3300037418 Ga0395900_0024033 Ga0395900_0024033_5040_6140 349
135 3300044684 Ga0466966_0100464 Ga0466966_0100464_107_1186 349
136 3300044693 Ga0466961_0038827 Ga0466961_0038827_244_1323 349
137 3300044719 Ga0466971_0037566 Ga0466971_0037566_406_1485 349
138 3300044735 Ga0466968_0018110 Ga0466968_0018110_436_1515 349
139 3300044765 Ga0466970_0002817 Ga0466970_0002817_4249_5346 349
140 3300044765 Ga0466970_0025384 Ga0466970_0025384_1185_2264 349
141 3300044765 Ga0466970_0042255 Ga0466970_0042255_1225_2322 349
142 3300044901 Ga0466960_0063297 Ga0466960_0063297_71_1150 349
143 3300047320 Ga0495672_0006618 Ga0495672_0006618_6843_7931 349
144 3300047320 Ga0495672_0033314 Ga0495672_0033314_1306_2400 349
145 3300048904 Ga0496101_0043514 Ga0496101_0043514_180_1259 349
146 3300048907 Ga0496104_0026280 Ga0496104_0026280_2940_4019 349
147 3300048910 Ga0496107_0111133 Ga0496107_0111133_174_1253 349
148 3300048917 Ga0496114_0023550 Ga0496114_0023550_764_1843 349
149 3300048927 Ga0496124_0008033 Ga0496124_0008033_4679_5776 349
150 3300048927 Ga0496124_0039984 Ga0496124_0039984_1670_2833 349
151 3300048929 Ga0496126_0033783 Ga0496126_0033783_3017_4111 349
152 3300049571 Ga0501034_0016760 Ga0501034_0016760_3763_4842 349
153 3300049571 Ga0501034_0039791 Ga0501034_0039791_823_1920 349
154 3300049581 Ga0501047_0025199 Ga0501047_0025199_1002_2177 349
155 3300049586 Ga0501070_0031788 Ga0501070_0031788_2759_3844 349
156 3300049589 Ga0501073_0000029 Ga0501073_0000029_16287_17372 349
157 3300049742 Ga0501080_0075558 Ga0501080_0075558_1460_2563 349
158 3300049822 Ga0501035_0005688 Ga0501035_0005688_3518_4597 349
159 3300049822 Ga0501035_0038886 Ga0501035_0038886_615_1700 349
160 3300049823 Ga0501044_0001379 Ga0501044_0001379_12393_13478 349
161 3300050491 nmdc:mga00v17_2023_c2 nmdc:mga00v17_2023_c2_3714_4811 349
162 3300050492 nmdc:mga0yw44_6589_c1 nmdc:mga0yw44_6589_c1_913_2010 349
163 3300053080 Ga0500635_0000012 Ga0500635_0000012_102035_103129 349
164 3300053104 Ga0500556_0000141 Ga0500556_0000141_34169_35251 349
165 3300053108 Ga0500562_001500 Ga0500562_001500_753_1850 349
166 3300053117 Ga0500593_001803 Ga0500593_001803_5744_6826 349
167 3300053136 Ga0500559_0000264 Ga0500559_0000264_14612_15697 349
168 3300053139 Ga0500568_0000064 Ga0500568_0000064_22517_23596 349
169 3300053140 Ga0500573_0010789 Ga0500573_0010789_2467_3546 349
170 3300053140 Ga0500573_0027275 Ga0500573_0027275_1096_2193 349
171 3300053140 Ga0500573_0031375 Ga0500573_0031375_790_1872 349
172 3300053153 Ga0500616_0026369 Ga0500616_0026369_78_1175 349
173 3300053730 Ga0500645_005776 Ga0500645_005776_1321_2403 349
174 3300061719 Ga0466962_0016187 Ga0466962_0016187_1561_2640 349
175 iso_pu_bacteria 2643221613 2644083318 349
176 iso_pu_bacteria 2643221721 2644666398 349
177 iso_pu_bacteria 2751185788 2753302230 349
178 iso_pu_bacteria 2839986021 2839986717 349
179 iso_pu_bacteria 2904430863 2904432728 349
180 iso_pu_bacteria 2904501621 2904503174 349
181 iso_pu_bacteria 2908674828 2908675649 349
182 iso_pu_bacteria 2909074476 2909074696 349
183 iso_pu_bacteria 2919039151 2919040842 349
184 iso_pu_bacteria 2928500415 2928500633 349
185 iso_pu_bacteria 2932431166 2932431938 349
186 iso_pu_bacteria 2935890801 2935891012 349
187 iso_pu_bacteria 2964326757 2964329775 349
188 iso_pu_bacteria 2995726249 2995727908 349

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01761

DHQ_synthase

3-dehydroquinate synthase

75

189

0.97

PF24621

190

345

0.93

PF13685

Fe-ADH_2

Iron-containing alcohol dehydrogenase

27

183

0.68

Structural Annotation

Top 5 Hits

ID Description Score Start End
3qbe-assembly1.cif.gz_A crystal structure of the 3-dehydroquinate synthase (arob) from mycobacterium tuberculosis 0.9648 4 349
3qbe-assembly1.cif.gz_A crystal structure of the 3-dehydroquinate synthase (arob) from mycobacterium tuberculosis 0.9539 4 349
3qbd-assembly1.cif.gz_A 3-dehydroquinate synthase (arob) from mycobacterium tuberculosis in complex with nad 0.9433 4 349
3qbd-assembly1.cif.gz_B 3-dehydroquinate synthase (arob) from mycobacterium tuberculosis in complex with nad 0.9421 4 347
3qbd-assembly1.cif.gz_A 3-dehydroquinate synthase (arob) from mycobacterium tuberculosis in complex with nad 0.9406 4 349
ID Description Score Start End Superfamily
3qbdA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9654 4 172 3.40.50.1970
3qbdA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9599 4 172 3.40.50.1970
af_A0A0R0HLZ4_60_246_3.40.50.1970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9369 5 172 3.40.50.1970
1ujnB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9318 6 172 3.40.50.1970
2gruA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9304 6 169 3.40.50.1970
ID Description Score Start End GO Terms
AF-A0A3N0C3Q5-F1-model_v4 3-dehydroquinate synthase (DHQS) (EC 4.2.3.4) 0.9866 1 349 GO:0000166
GO:0003856
GO:0005737
GO:0008652
GO:0009073
GO:0009423
GO:0046872
AF-A0A358D5Q3-F1-model_v4 3-dehydroquinate synthase (EC 4.2.3.4) 0.9857 1 292 GO:0003856
GO:0005737
GO:0008652
GO:0009073
GO:0009423
AF-A0A1R1LEV7-F1-model_v4 3-dehydroquinate synthase (DHQS) (EC 4.2.3.4) 0.9855 1 349 GO:0000166
GO:0003856
GO:0005737
GO:0008652
GO:0009073
GO:0009423
GO:0046872
AF-A0A2S8M8B4-F1-model_v4 deleted 0.9854 106 349
AF-A0A7G5M0Z9-F1-model_v4 3-dehydroquinate synthase (DHQS) (EC 4.2.3.4) 0.9851 4 349 GO:0000166
GO:0003856
GO:0005737
GO:0008652
GO:0009073
GO:0009423
GO:0046872

Feature Viewer

pLDDT pTM Quality
93.24 0.92 High
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Predicted Structure (AlphaFold2)

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