F290010

General Info

Members Datasets Scaffolds Average Seq Length
188 119 376 121

Family's Representative Sequence

Representative Sequence 3300049577|Ga0501041_0539707|Ga0501041_0539707_274_672
Length 132
Sequence MASRGTARARVSRELVERADETAARAYAPYSRYLVGAVVRARDGTEFEGVNVENAAYPLGICAEKTAIAAAVTAGYHPGDLAAIGITASPCGGCRQWLHEFRIDEVSYRDADGEIRTTTPAALLPDTWDLPG

Samples

Sample ID Description Type Environment
1 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
6 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
7 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
8 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
9 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
10 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
11 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
12 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
13 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
14 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
15 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
19 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
20 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
21 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
22 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
23 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
24 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
25 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
26 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
27 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
32 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
33 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
34 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
50 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
52 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
53 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
54 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
55 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
56 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
57 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
58 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
59 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
60 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
61 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
62 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
63 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
64 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
65 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
66 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
67 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
68 3300038996 Genetically engineered switchgrass root microbial communities from Knoxville, USA - plot19 Metagenome Rhizosphere
69 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
70 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
71 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
72 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
73 3300042437 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z081617_5554 Metagenome Rhizosphere
74 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
75 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
76 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
77 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
78 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
79 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
80 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
81 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
82 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
83 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
84 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
85 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
86 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
87 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
88 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
89 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
90 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
91 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
92 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
97 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
98 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
99 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
100 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
101 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
102 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
103 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
105 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
106 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
107 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
108 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
109 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
110 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
111 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
112 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
113 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
114 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
115 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
116 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
117 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
118 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
119 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.6
Nodule 0
Rhizoplane 6.91
Rhizosphere 91.49
Stem 0
Stem Tuber 0
Unclassified 1.6

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501041_0539707 3300049577 Bacteria 743
2 Ga0070683_100201506 3300005329 Bacteria 1890
3 Ga0070660_100931578 3300005339 Bacteria 733
4 Ga0070668_100811404 3300005347 Bacteria 832
5 Ga0070714_100886558 3300005435 Bacteria 866
6 Ga0070713_102015097 3300005436 Bacteria 560
7 Ga0070711_100027032 3300005439 Bacteria 3763
8 Ga0070711_101713925 3300005439 Unclassified 551
9 Ga0070708_100133641 3300005445 Bacteria 2297
10 Ga0070678_102070628 3300005456 Bacteria 539
11 Ga0070706_100211387 3300005467 Bacteria 1812
12 Ga0070707_100008980 3300005468 Bacteria 9270
13 Ga0070707_100171122 3300005468 Bacteria 2117
14 Ga0070707_100792049 3300005468 Bacteria 912
15 Ga0070698_100929203 3300005471 Bacteria 816
16 Ga0070699_100088279 3300005518 Bacteria 2708
17 Ga0070699_100486189 3300005518 Bacteria 1121
18 Ga0070684_100067255 3300005535 Unclassified 3147
19 Ga0070686_100614453 3300005544 Bacteria 858
20 Ga0068855_100033066 3300005563 Bacteria 6174
21 Ga0068856_101270601 3300005614 Bacteria 752
22 Ga0068862_100666343 3300005844 Bacteria 1005
23 Ga0068862_101958862 3300005844 Bacteria 596
24 Ga0075365_10322714 3300006038 Bacteria 1087
25 Ga0075364_10529430 3300006051 Bacteria 806
26 Ga0070716_100094013 3300006173 Bacteria 1821
27 Ga0070716_100362528 3300006173 Bacteria 1030
28 Ga0075428_100011198 3300006844 Bacteria 9982
29 Ga0075431_100144283 3300006847 Bacteria 2453
30 Ga0075433_10020322 3300006852 Bacteria 5549
31 Ga0075433_11308738 3300006852 Bacteria 628
32 Ga0075434_100034415 3300006871 Bacteria 5002
33 Ga0075434_100062017 3300006871 Bacteria 3721
34 Ga0075436_100025562 3300006914 Bacteria 4064
35 Ga0075436_100072800 3300006914 Bacteria 2378
36 Ga0075436_101328796 3300006914 Bacteria 544
37 Ga0075435_100009801 3300007076 Bacteria 6971
38 Ga0105240_10359642 3300009093 Bacteria 1649
39 Ga0111539_10009811 3300009094 Bacteria 12084
40 Ga0111539_11434656 3300009094 Bacteria 801
41 Ga0114129_10004975 3300009147 Bacteria 18726
42 Ga0157370_10142380 3300013104 Bacteria 2234
43 Ga0157369_10139170 3300013105 Bacteria 2569
44 Ga0157369_11547474 3300013105 Bacteria 674
45 Ga0157378_10599106 3300013297 Bacteria 1113
46 Ga0207684_10047096 3300025910 Bacteria 3658
47 Ga0207684_10468807 3300025910 Bacteria 1081
48 Ga0207695_10961212 3300025913 Bacteria 734
49 Ga0207693_10000839 3300025915 Bacteria 27394
50 Ga0207663_10112613 3300025916 Bacteria 1849
51 Ga0207663_10142257 3300025916 Bacteria 1672
52 Ga0207657_11269312 3300025919 Bacteria 557
53 Ga0207646_10095570 3300025922 Bacteria 2662
54 Ga0207646_10424222 3300025922 Bacteria 1200
55 Ga0207646_10890120 3300025922 Bacteria 790
56 Ga0207687_10812912 3300025927 Bacteria 798
57 Ga0207664_10558842 3300025929 Bacteria 1027
58 Ga0207706_11530850 3300025933 Bacteria 543
59 Ga0207665_10005560 3300025939 Bacteria 8404
60 Ga0207661_10074316 3300025944 Bacteria 2786
61 Ga0207667_10125088 3300025949 Bacteria 2648
62 Ga0207677_10639553 3300026023 Bacteria 938
63 Ga0207708_10170576 3300026075 Bacteria 1723
64 Ga0207683_10592471 3300026121 Bacteria 1026
65 Ga0207428_10009259 3300027907 Bacteria 8843
66 Ga0268265_10778677 3300028380 Bacteria 931
67 Ga0265338_10097884 3300028800 Bacteria 2402
68 Ga0265338_10195699 3300028800 Bacteria 1528
69 Ga0265327_10005943 3300031251 Bacteria 9948
70 Ga0265316_10203762 3300031344 Bacteria 1466
71 Ga0307408_101422950 3300031548 Bacteria 653
72 Ga0307408_102414272 3300031548 Bacteria 510
73 Ga0307405_11064790 3300031731 Bacteria 693
74 Ga0307406_11359609 3300031901 Bacteria 621
75 Ga0307407_10716717 3300031903 Bacteria 755
76 Ga0307412_10375395 3300031911 Bacteria 1149
77 Ga0307409_100058750 3300031995 Bacteria 2989
78 Ga0307416_100045533 3300032002 Bacteria 3455
79 Ga0307416_102341144 3300032002 Bacteria 634
80 Ga0307415_100377523 3300032126 Bacteria 1202
81 Ga0373925_0073230 3300037068 Bacteria 2593
82 Ga0395899_0008087 3300037312 Bacteria 8099
83 Ga0395899_0066034 3300037312 Bacteria 2657
84 Ga0395899_0108366 3300037312 Bacteria 1999
85 Ga0395899_0314589 3300037312 Bacteria 1056
86 Ga0395900_0011833 3300037418 Bacteria 8924
87 Ga0395900_0011878 3300037418 Bacteria 8906
88 Ga0395900_0036190 3300037418 Bacteria 5087
89 Ga0395900_0053243 3300037418 Bacteria 4165
90 Ga0395900_0223996 3300037418 Bacteria 1894
91 Ga0395900_0467528 3300037418 Bacteria 1215
92 Ga0395900_0560734 3300037418 Bacteria 1086
93 Ga0395900_0915866 3300037418 Bacteria 799
94 Ga0395900_1228682 3300037418 Bacteria 664
95 Ga0395900_1798190 3300037418 Bacteria 523
96 Ga0395898_0003460 3300037466 Bacteria 17643
97 Ga0395898_0003701 3300037466 Bacteria 16979
98 Ga0395898_0017858 3300037466 Bacteria 7236
99 Ga0395898_0073604 3300037466 Bacteria 3301
100 Ga0395898_0476985 3300037466 Bacteria 1187
101 Ga0395898_0525975 3300037466 Bacteria 1124
102 Ga0395898_0885300 3300037466 Bacteria 831
103 Ga0395898_0932809 3300037466 Bacteria 806
104 Ga0395905_0072248 3300037471 Bacteria 3235
105 Ga0395905_0113433 3300037471 Bacteria 2546
106 Ga0395905_0298020 3300037471 Bacteria 1499
107 Ga0395905_0426048 3300037471 Bacteria 1223
108 Ga0395905_0611057 3300037471 Bacteria 992
109 Ga0395901_0003134 3300038443 Bacteria 16607
110 Ga0395901_0003321 3300038443 Bacteria 16211
111 Ga0395901_0027326 3300038443 Bacteria 5861
112 Ga0395901_0032207 3300038443 Bacteria 5410
113 Ga0395901_0107516 3300038443 Bacteria 2928
114 Ga0395901_0113439 3300038443 Bacteria 2846
115 Ga0395901_0241483 3300038443 Bacteria 1884
116 Ga0395901_0415741 3300038443 Bacteria 1380
117 Ga0395901_0533197 3300038443 Bacteria 1191
118 Ga0242420_011657 3300038996 Bacteria 1478
119 Ga0439466_0138267 3300041411 Bacteria 748
120 Ga0439465_0140985 3300041413 Bacteria 856
121 Ga0439446_0156838 3300042156 Bacteria 751
122 Ga0439434_0070793 3300042435 Bacteria 1098
123 Ga0439434_0273638 3300042435 Bacteria 580
124 Ga0439444_0049783 3300042437 Bacteria 848
125 Ga0466963_0381498 3300044694 Bacteria 994
126 Ga0466960_0284849 3300044901 Bacteria 927
127 Ga0466967_0054410 3300045976 Bacteria 3522
128 Ga0466967_1028591 3300045976 Bacteria 820
129 Ga0495653_0525628 3300046463 Bacteria 735
130 Ga0495618_0176797 3300046514 Bacteria 1357
131 Ga0495630_0191815 3300046517 Bacteria 1559
132 Ga0495630_0272242 3300046517 Bacteria 1294
133 Ga0495652_0660993 3300046529 Bacteria 707
134 Ga0495586_0364254 3300046535 Bacteria 831
135 Ga0495598_0266606 3300046537 Bacteria 639
136 Ga0495636_0415800 3300047318 Unclassified 642
137 Ga0496104_1449813 3300048907 Bacteria 589
138 Ga0496104_1813586 3300048907 Bacteria 512
139 Ga0496105_0045380 3300048908 Bacteria 3626
140 Ga0496106_0232021 3300048909 Bacteria 1474
141 Ga0496108_0284575 3300048911 Bacteria 1439
142 Ga0496109_0657132 3300048912 Bacteria 985
143 Ga0496109_0761294 3300048912 Bacteria 906
144 Ga0496110_0552337 3300048913 Bacteria 1047
145 Ga0496110_0800732 3300048913 Bacteria 847
146 Ga0496110_1267373 3300048913 Bacteria 646
147 Ga0496111_0104470 3300048914 Bacteria 2084
148 Ga0496111_0825500 3300048914 Bacteria 670
149 Ga0496112_0016321 3300048915 Bacteria 6954
150 Ga0501036_0131969 3300049572 Bacteria 2109
151 Ga0501041_0525953 3300049577 Bacteria 753
152 Ga0501042_0887602 3300049578 Bacteria 649
153 Ga0501046_0265863 3300049580 Bacteria 1259
154 Ga0501047_0328651 3300049581 Bacteria 1367
155 Ga0501068_0179084 3300049584 Bacteria 1340
156 Ga0501072_0988387 3300049588 Bacteria 656
157 Ga0501075_0150239 3300049591 Bacteria 1776
158 Ga0501076_0112296 3300049592 Bacteria 2204
159 Ga0501077_0039181 3300049593 Bacteria 3018
160 Ga0501080_0054253 3300049742 Bacteria 3732
161 Ga0501080_0505727 3300049742 Bacteria 1079
162 Ga0501081_0015343 3300049743 Bacteria 5054
163 Ga0501035_0969015 3300049822 Bacteria 670
164 Ga0501044_0856075 3300049823 Bacteria 786
165 Ga0501044_1527673 3300049823 Bacteria 533
166 nmdc:mga00v17_277282_c1 3300050491 Bacteria 1088
167 nmdc:mga05p37_36326_c1 3300050507 Bacteria 6045
168 nmdc:mga06r32_351745_c1 3300050510 Bacteria 1458
169 nmdc:mga08y16_1373888_c1 3300050511 Bacteria 670
170 nmdc:mga08y16_24373_c1 3300050511 Bacteria 6385
171 nmdc:mga0n895_35185_c1 3300050512 Bacteria 4827
172 nmdc:mga0rr50_18698_c1 3300050513 Bacteria 4661
173 nmdc:mga0rr50_33055_c1 3300050513 Bacteria 3693
174 nmdc:mga08x19_19995_c1 3300050514 Bacteria 4119
175 nmdc:mga08x19_71061_c1 3300050514 Bacteria 2269
176 nmdc:mga0a205_3707_c1 3300050515 Bacteria 13673
177 Ga0495601_1085476 3300053077 Bacteria 501
178 Ga0495612_0578151 3300053078 Bacteria 518
179 Ga0495619_0888726 3300053085 Bacteria 600
180 Ga0501084_0487448 3300054114 Bacteria 1042
181 Ga0501084_0652573 3300054114 Bacteria 888
182 Ga0501082_0171179 3300060353 Bacteria 1888
183 Ga0501082_0986172 3300060353 Bacteria 737
184 Ga0501082_1229249 3300060353 Bacteria 655
185 Ga0501082_1291105 3300060353 Bacteria 638
186 Ga0466962_0261942 3300061719 Bacteria 851
187 Ga0530510_0166080 3300061734 Bacteria 1634
188 Ga0530510_1478732 3300061734 Bacteria 522
189 Ga0501041_0539707
190 Ga0070683_100201506
191 Ga0070660_100931578
192 Ga0070668_100811404
193 Ga0070714_100886558
194 Ga0070713_102015097
195 Ga0070711_100027032
196 Ga0070711_101713925
197 Ga0070708_100133641
198 Ga0070678_102070628
199 Ga0070706_100211387
200 Ga0070707_100008980
201 Ga0070707_100171122
202 Ga0070707_100792049
203 Ga0070698_100929203
204 Ga0070699_100088279
205 Ga0070699_100486189
206 Ga0070684_100067255
207 Ga0070686_100614453
208 Ga0068855_100033066
209 Ga0068856_101270601
210 Ga0068862_100666343
211 Ga0068862_101958862
212 Ga0075365_10322714
213 Ga0075364_10529430
214 Ga0070716_100094013
215 Ga0070716_100362528
216 Ga0075428_100011198
217 Ga0075431_100144283
218 Ga0075433_10020322
219 Ga0075433_11308738
220 Ga0075434_100034415
221 Ga0075434_100062017
222 Ga0075436_100025562
223 Ga0075436_100072800
224 Ga0075436_101328796
225 Ga0075435_100009801
226 Ga0105240_10359642
227 Ga0111539_10009811
228 Ga0111539_11434656
229 Ga0114129_10004975
230 Ga0157370_10142380
231 Ga0157369_10139170
232 Ga0157369_11547474
233 Ga0157378_10599106
234 Ga0207684_10047096
235 Ga0207684_10468807
236 Ga0207695_10961212
237 Ga0207693_10000839
238 Ga0207663_10112613
239 Ga0207663_10142257
240 Ga0207657_11269312
241 Ga0207646_10095570
242 Ga0207646_10424222
243 Ga0207646_10890120
244 Ga0207687_10812912
245 Ga0207664_10558842
246 Ga0207706_11530850
247 Ga0207665_10005560
248 Ga0207661_10074316
249 Ga0207667_10125088
250 Ga0207677_10639553
251 Ga0207708_10170576
252 Ga0207683_10592471
253 Ga0207428_10009259
254 Ga0268265_10778677
255 Ga0265338_10097884
256 Ga0265338_10195699
257 Ga0265327_10005943
258 Ga0265316_10203762
259 Ga0307408_101422950
260 Ga0307408_102414272
261 Ga0307405_11064790
262 Ga0307406_11359609
263 Ga0307407_10716717
264 Ga0307412_10375395
265 Ga0307409_100058750
266 Ga0307416_100045533
267 Ga0307416_102341144
268 Ga0307415_100377523
269 Ga0373925_0073230
270 Ga0395899_0008087
271 Ga0395899_0066034
272 Ga0395899_0108366
273 Ga0395899_0314589
274 Ga0395900_0011833
275 Ga0395900_0011878
276 Ga0395900_0036190
277 Ga0395900_0053243
278 Ga0395900_0223996
279 Ga0395900_0467528
280 Ga0395900_0560734
281 Ga0395900_0915866
282 Ga0395900_1228682
283 Ga0395900_1798190
284 Ga0395898_0003460
285 Ga0395898_0003701
286 Ga0395898_0017858
287 Ga0395898_0073604
288 Ga0395898_0476985
289 Ga0395898_0525975
290 Ga0395898_0885300
291 Ga0395898_0932809
292 Ga0395905_0072248
293 Ga0395905_0113433
294 Ga0395905_0298020
295 Ga0395905_0426048
296 Ga0395905_0611057
297 Ga0395901_0003134
298 Ga0395901_0003321
299 Ga0395901_0027326
300 Ga0395901_0032207
301 Ga0395901_0107516
302 Ga0395901_0113439
303 Ga0395901_0241483
304 Ga0395901_0415741
305 Ga0395901_0533197
306 Ga0242420_011657
307 Ga0439466_0138267
308 Ga0439465_0140985
309 Ga0439446_0156838
310 Ga0439434_0070793
311 Ga0439434_0273638
312 Ga0439444_0049783
313 Ga0466963_0381498
314 Ga0466960_0284849
315 Ga0466967_0054410
316 Ga0466967_1028591
317 Ga0495653_0525628
318 Ga0495618_0176797
319 Ga0495630_0191815
320 Ga0495630_0272242
321 Ga0495652_0660993
322 Ga0495586_0364254
323 Ga0495598_0266606
324 Ga0495636_0415800
325 Ga0496104_1449813
326 Ga0496104_1813586
327 Ga0496105_0045380
328 Ga0496106_0232021
329 Ga0496108_0284575
330 Ga0496109_0657132
331 Ga0496109_0761294
332 Ga0496110_0552337
333 Ga0496110_0800732
334 Ga0496110_1267373
335 Ga0496111_0104470
336 Ga0496111_0825500
337 Ga0496112_0016321
338 Ga0501036_0131969
339 Ga0501041_0525953
340 Ga0501042_0887602
341 Ga0501046_0265863
342 Ga0501047_0328651
343 Ga0501068_0179084
344 Ga0501072_0988387
345 Ga0501075_0150239
346 Ga0501076_0112296
347 Ga0501077_0039181
348 Ga0501080_0054253
349 Ga0501080_0505727
350 Ga0501081_0015343
351 Ga0501035_0969015
352 Ga0501044_0856075
353 Ga0501044_1527673
354 nmdc:mga00v17_277282_c1
355 nmdc:mga05p37_36326_c1
356 nmdc:mga06r32_351745_c1
357 nmdc:mga08y16_1373888_c1
358 nmdc:mga08y16_24373_c1
359 nmdc:mga0n895_35185_c1
360 nmdc:mga0rr50_18698_c1
361 nmdc:mga0rr50_33055_c1
362 nmdc:mga08x19_19995_c1
363 nmdc:mga08x19_71061_c1
364 nmdc:mga0a205_3707_c1
365 Ga0495601_1085476
366 Ga0495612_0578151
367 Ga0495619_0888726
368 Ga0501084_0487448
369 Ga0501084_0652573
370 Ga0501082_0171179
371 Ga0501082_0986172
372 Ga0501082_1229249
373 Ga0501082_1291105
374 Ga0466962_0261942
375 Ga0530510_0166080
376 Ga0530510_1478732

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00383

dCMP_cyt_deam_1

Cytidine and deoxycytidylate deaminase zinc-binding region

10

109

0.91

PF08211

dCMP_cyt_deam_2

Cytidine and deoxycytidylate deaminase zinc-binding region

2

88

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
3dmo-assembly1.cif.gz_C 1.6 a crystal structure of cytidine deaminase from burkholderia pseudomallei 0.9041 1 118
2d30-assembly1.cif.gz_A crystal structure of cytidine deaminase cdd-2 (ba4525) from bacillus anthracis at 2.40a resolution 0.89 1 117
7zob-assembly2.cif.gz_E metagenomic cytidine deaminase cdd 0.8838 1 118
1r5t-assembly1.cif.gz_D the crystal structure of cytidine deaminase cdd1, an orphan c to u editase from yeast 0.8776 3 118
1mq0-assembly1.cif.gz_A crystal structure of human cytidine deaminase 0.8751 1 118
ID Description Score Start End Superfamily
af_Q2FY04_3_129_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.8832 7 119 3.40.140.10
1r5tD00 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.8776 3 118 3.40.140.10
3pjyA00 Mainly Beta;Sandwich;Jelly Rolls;Protein of unknown function DUF192 0.8759 25 40 2.60.120.1140
af_Q09190_1_133_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.8724 4 118 3.40.140.10
af_A0A1D8PMQ1_5_145_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.8703 3 118 3.40.140.10
ID Description Score Start End GO Terms
AF-A0A538D7I5-F1-model_v4 Cytidine deaminase (EC 3.5.4.5) 0.9631 1 82 GO:0004126
GO:0005829
GO:0008270
GO:0009972
AF-A0A838H0C5-F1-model_v4 Cytidine deaminase (EC 3.5.4.5) 0.958 2 76 GO:0004126
GO:0005829
GO:0008270
GO:0009972
AF-A0A353HWN1-F1-model_v4 Cytidine deaminase (EC 3.5.4.5) (Cytidine aminohydrolase) 0.9561 4 91 GO:0004126
GO:0005829
GO:0008270
GO:0009972
AF-A0A538D7I5-F1-model_v4 Cytidine deaminase (EC 3.5.4.5) 0.9518 1 82 GO:0004126
GO:0005829
GO:0008270
GO:0009972
AF-A0A7W0PZU2-F1-model_v4 Cytidine deaminase (EC 3.5.4.5) 0.9513 1 120 GO:0004126
GO:0005829
GO:0008270
GO:0009972
GO:0042802

Map