F287933

General Info

Members Datasets Scaffolds Average Seq Length
187 148 374 523

Family's Representative Sequence

Representative Sequence 3300031995|Ga0307409_100115191|Ga0307409_1001151911
Length 615
Sequence MSLALARKYRPKNFASVAVQSHVSNTLKGAIARGRVAHGYLLCGPRGTGKTTLARVLAMALNCERRPRTEAELTGREESAGRAAGADPTTGEGSAPCGECISCVRIWSGAASLDVVEIDAASNRGVDDARELRERAMYAPSGEGRYKVYIVDEAHMLTREAWNALLKVLEEPPPRVVFVFATTEPQKIAQAAAPVLSRLQRFDLKRIGPAEIRDRLAAVLTAEGVPFEGDALAMIARAADGGLRDALSLTDQVLSLGAASEATAERVREALGLVAEDEYIALLDLIAERRAGDVFASVGRLADQGIDFGALLTGLADVLRAQLAVALGGTADGVSERGRAALAERRDRLAPGDLLRMLHALGELEPRFRKSSQQQLLLETLLVRFALLDRTVDIEDVLRRLTGDGSSEGAPPAGHRASAVEAGPAPRADGGSGDRFSDWDSARAALAPPSAPTRPTLSRLNDSGPTAAARPVDLGGAAAVGLAERPAATALNVLVERWDEVVAHVRGAGRAILAAALDRAVPVAVSSAGTVTVEVEDEASGPVVEAGQGDVTAALQATFGVANRVIVRRSGASSTPPAALRVTHESVKTERVATLRKRDAVLGAAIDALDLDLVD

Samples

Sample ID Description Type Environment
1 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
2 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
8 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
11 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
12 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
15 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
16 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
17 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
18 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
19 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
20 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
21 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
22 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
23 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
24 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
25 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
26 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
27 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
28 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
29 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
30 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
31 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
32 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
33 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
34 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
35 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
36 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
37 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
38 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
39 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
40 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
41 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
42 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
43 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
45 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
47 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
48 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
49 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
50 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
51 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
52 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
53 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
54 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
55 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
56 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
57 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
81 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
82 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
83 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
84 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
85 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
86 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
87 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
88 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
89 3300034820 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 Metagenome Rhizosphere
90 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
91 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
92 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
93 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
94 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
95 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
96 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
97 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
98 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
99 3300038996 Genetically engineered switchgrass root microbial communities from Knoxville, USA - plot19 Metagenome Rhizosphere
100 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
101 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
102 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
103 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
104 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
105 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
106 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
107 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
108 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
109 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
110 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
111 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
112 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
113 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
114 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
115 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
116 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
117 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
118 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
119 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
120 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
121 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
122 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
123 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
124 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
125 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
126 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
127 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
128 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
129 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
130 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
131 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
132 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
133 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
134 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
135 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
136 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
137 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
138 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
139 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
140 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
141 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
142 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
143 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
144 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
145 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
146 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
147 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
148 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.53
Rhizosphere 98.4
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307409_100115191 3300031995 Bacteria 2263
2 Ga0065715_10137584 3300005293 Bacteria 1905
3 Ga0070676_10031814 3300005328 Bacteria 3019
4 Ga0070683_100041850 3300005329 Bacteria 4217
5 Ga0070683_100098634 3300005329 Bacteria 2750
6 Ga0070690_100054226 3300005330 Bacteria 2566
7 Ga0070680_100000354 3300005336 Bacteria 30834
8 Ga0070680_100067657 3300005336 Bacteria 2930
9 Ga0070682_100000492 3300005337 Bacteria 24800
10 Ga0068868_100015301 3300005338 Bacteria 5671
11 Ga0070660_100025154 3300005339 Bacteria 4423
12 Ga0070691_10006984 3300005341 Bacteria 5173
13 Ga0070675_100003160 3300005354 Bacteria 12455
14 Ga0070675_100013214 3300005354 Bacteria 6488
15 Ga0070674_100028333 3300005356 Bacteria 3678
16 Ga0070659_100080739 3300005366 Bacteria 2597
17 Ga0070709_10000686 3300005434 Bacteria 19213
18 Ga0070714_100001803 3300005435 Bacteria 15572
19 Ga0070714_100015751 3300005435 Bacteria 6090
20 Ga0070714_100068125 3300005435 Bacteria 3070
21 Ga0070710_10003188 3300005437 Bacteria 7777
22 Ga0070700_100088169 3300005441 Bacteria 2019
23 Ga0070694_100023678 3300005444 Bacteria 3953
24 Ga0070708_100059578 3300005445 Bacteria 3404
25 Ga0070678_100036095 3300005456 Bacteria 3457
26 Ga0070681_10001775 3300005458 Bacteria 19354
27 Ga0070681_10030999 3300005458 Bacteria 5368
28 Ga0070707_100025390 3300005468 Bacteria 5621
29 Ga0070698_100001204 3300005471 Bacteria 28711
30 Ga0070698_100021929 3300005471 Bacteria 6687
31 Ga0070698_100036051 3300005471 Bacteria 5112
32 Ga0070698_100054300 3300005471 Bacteria 4068
33 Ga0070679_100010648 3300005530 Bacteria 8726
34 Ga0070679_100011229 3300005530 Bacteria 8539
35 Ga0070679_100028912 3300005530 Bacteria 5467
36 Ga0070684_100035450 3300005535 Bacteria 4269
37 Ga0070684_100146086 3300005535 Bacteria 2141
38 Ga0070697_100052151 3300005536 Bacteria 3324
39 Ga0070697_100085230 3300005536 Bacteria 2606
40 Ga0070686_100010990 3300005544 Bacteria 5125
41 Ga0070695_100010600 3300005545 Bacteria 5508
42 Ga0070696_100000660 3300005546 Bacteria 22085
43 Ga0070696_100071504 3300005546 Bacteria 2441
44 Ga0070693_100002140 3300005547 Bacteria 9054
45 Ga0070693_100019501 3300005547 Bacteria 3556
46 Ga0070693_100081085 3300005547 Bacteria 1934
47 Ga0070665_100063897 3300005548 Bacteria 3691
48 Ga0068852_100022758 3300005616 Bacteria 5031
49 Ga0068864_100041227 3300005618 Bacteria 3949
50 Ga0068866_10014380 3300005718 Bacteria 3494
51 Ga0081539_10000650 3300005985 Bacteria 69879
52 Ga0070716_100003069 3300006173 Bacteria 7794
53 Ga0075430_100000259 3300006846 Bacteria 37106
54 Ga0075431_100010785 3300006847 Bacteria 9188
55 Ga0075431_100076438 3300006847 Bacteria 3455
56 Ga0075433_10007884 3300006852 Bacteria 8469
57 Ga0075434_100002446 3300006871 Bacteria 16346
58 Ga0075434_100028012 3300006871 Bacteria 5532
59 Ga0075436_100002597 3300006914 Bacteria 12409
60 Ga0105240_10124811 3300009093 Bacteria 3095
61 Ga0111539_10029424 3300009094 Bacteria 6690
62 Ga0111539_10038811 3300009094 Bacteria 5744
63 Ga0105245_10152606 3300009098 Bacteria 2185
64 Ga0114129_10021186 3300009147 Bacteria 9232
65 Ga0105241_10000580 3300009174 Bacteria 27577
66 Ga0105242_10002665 3300009176 Bacteria 13989
67 Ga0105248_10142931 3300009177 Bacteria 2699
68 Ga0105238_10068569 3300009551 Bacteria 3548
69 Ga0105249_10000154 3300009553 Bacteria 85161
70 Ga0157370_10059135 3300013104 Bacteria 3643
71 Ga0157378_10017905 3300013297 Bacteria 6218
72 Ga0157372_10205234 3300013307 Bacteria 2284
73 Ga0182008_10004396 3300014497 Bacteria 8243
74 Ga0157376_10001870 3300014969 Bacteria 14037
75 Ga0213876_10003242 3300021384 Bacteria 9334
76 Ga0207682_10005041 3300025893 Bacteria 5413
77 Ga0207692_10058384 3300025898 Bacteria 1987
78 Ga0207699_10016232 3300025906 Bacteria 3889
79 Ga0207699_10023865 3300025906 Bacteria 3335
80 Ga0207645_10013044 3300025907 Bacteria 5615
81 Ga0207707_10002464 3300025912 Bacteria 16657
82 Ga0207707_10010359 3300025912 Bacteria 8090
83 Ga0207707_10039756 3300025912 Bacteria 4111
84 Ga0207660_10005402 3300025917 Bacteria 8294
85 Ga0207657_10004832 3300025919 Bacteria 14195
86 Ga0207652_10070489 3300025921 Bacteria 3036
87 Ga0207652_10127407 3300025921 Bacteria 2268
88 Ga0207646_10006906 3300025922 Bacteria 11658
89 Ga0207646_10041910 3300025922 Bacteria 4113
90 Ga0207650_10018215 3300025925 Bacteria 4926
91 Ga0207664_10000562 3300025929 Bacteria 26011
92 Ga0207664_10090951 3300025929 Bacteria 2501
93 Ga0207706_10000649 3300025933 Bacteria 36724
94 Ga0207686_10011704 3300025934 Bacteria 4812
95 Ga0207669_10065952 3300025937 Bacteria 2249
96 Ga0207691_10000761 3300025940 Bacteria 31887
97 Ga0207661_10053070 3300025944 Bacteria 3242
98 Ga0207712_10000127 3300025961 Bacteria 80901
99 Ga0207677_10008591 3300026023 Bacteria 5714
100 Ga0207639_10050717 3300026041 Bacteria 3152
101 Ga0207639_10057615 3300026041 Bacteria 2984
102 Ga0207678_10123224 3300026067 Bacteria 2212
103 Ga0207683_10129719 3300026121 Bacteria 2267
104 Ga0207698_10137059 3300026142 Bacteria 2101
105 Ga0268266_10059916 3300028379 Bacteria 3280
106 Ga0268266_10060616 3300028379 Bacteria 3262
107 Ga0265332_10007559 3300031238 Bacteria 4912
108 Ga0307408_100023172 3300031548 Bacteria 4227
109 Ga0265314_10002966 3300031711 Bacteria 16817
110 Ga0307405_10000570 3300031731 Bacteria 14066
111 Ga0307406_10033933 3300031901 Bacteria 3127
112 Ga0307407_10003057 3300031903 Bacteria 6744
113 Ga0307412_10008406 3300031911 Bacteria 5890
114 Ga0307412_10010365 3300031911 Bacteria 5366
115 Ga0307416_100027850 3300032002 Bacteria 4192
116 Ga0307416_100030510 3300032002 Bacteria 4046
117 Ga0307416_100075497 3300032002 Bacteria 2821
118 Ga0307415_100003286 3300032126 Bacteria 8215
119 Ga0307415_100098409 3300032126 Bacteria 2138
120 Ga0373959_0005825 3300034820 Bacteria 2029
121 Ga0373934_0000672 3300035086 Bacteria 12117
122 Ga0373941_0003439 3300035115 Bacteria 3586
123 Ga0373954_0033684 3300035118 Bacteria 2370
124 Ga0373956_0001645 3300035119 Bacteria 9199
125 Ga0373955_0000659 3300035172 Bacteria 14679
126 Ga0373933_0008653 3300035724 Bacteria 5549
127 Ga0373937_0004323 3300036401 Bacteria 12053
128 Ga0395899_0023417 3300037312 Bacteria 4677
129 Ga0395905_0082237 3300037471 Bacteria 3018
130 Ga0242420_001884 3300038996 Bacteria 2903
131 Ga0436365_0039336 3300039437 Bacteria 6895
132 Ga0439462_0002452 3300042015 Bacteria 4310
133 Ga0451577_0000001 3300042876 Bacteria 2461803
134 Ga0451577_0063638 3300042876 Bacteria 3289
135 Ga0466966_0046046 3300044684 Bacteria 2787
136 Ga0453684_0000294 3300044712 Bacteria 212051
137 Ga0453684_0033197 3300044712 Bacteria 7200
138 Ga0466959_0029773 3300045049 Bacteria 4045
139 Ga0466967_0117364 3300045976 Bacteria 2453
140 Ga0495592_0005223 3300046454 Bacteria 9578
141 Ga0495629_0015018 3300046459 Bacteria 5566
142 Ga0495651_0000175 3300046462 Bacteria 47420
143 Ga0495653_0000383 3300046463 Bacteria 35615
144 Ga0495653_0004005 3300046463 Bacteria 11898
145 Ga0495662_0012295 3300046476 Bacteria 4178
146 Ga0495608_0000417 3300046511 Bacteria 29650
147 Ga0495628_0000470 3300046516 Bacteria 36934
148 Ga0495630_0001583 3300046517 Bacteria 15836
149 Ga0495665_0016711 3300046531 Bacteria 3952
150 Ga0495586_0054040 3300046535 Bacteria 2176
151 Ga0495587_0000897 3300046536 Bacteria 19718
152 Ga0495645_0000255 3300046543 Bacteria 39004
153 Ga0495645_0084924 3300046543 Bacteria 2266
154 Ga0495667_0000354 3300046559 Bacteria 29067
155 Ga0495634_0040244 3300046642 Bacteria 3180
156 Ga0495635_0001397 3300046663 Bacteria 16109
157 Ga0495635_0006376 3300046663 Bacteria 8219
158 Ga0495657_0005530 3300046675 Bacteria 9982
159 Ga0495599_0002080 3300046678 Bacteria 11597
160 Ga0495623_0000262 3300046679 Bacteria 34051
161 Ga0495646_0002426 3300046680 Bacteria 11438
162 Ga0495613_0074422 3300046689 Bacteria 2473
163 Ga0495600_0002530 3300046809 Bacteria 10517
164 Ga0495600_0093430 3300046809 Bacteria 1961
165 Ga0495604_0000212 3300047317 Bacteria 53440
166 Ga0495674_0138807 3300047319 Bacteria 2044
167 Ga0495675_0020179 3300047444 Bacteria 4236
168 Ga0495684_0000725 3300047471 Bacteria 26577
169 Ga0495602_0000161 3300048088 Bacteria 62393
170 Ga0496112_0045305 3300048915 Bacteria 4312
171 Ga0501036_0062364 3300049572 Bacteria 3158
172 Ga0501038_0121044 3300049574 Bacteria 2158
173 Ga0501041_0017151 3300049577 Bacteria 4308
174 Ga0501075_0034465 3300049591 Bacteria 3770
175 Ga0501076_0006059 3300049592 Bacteria 8747
176 Ga0501045_0038688 3300049824 Bacteria 3470
177 nmdc:mga05p37_72528_c1 3300050507 Bacteria 4237
178 nmdc:mga09592_46927_c1 3300050508 Bacteria 3639
179 nmdc:mga0qj67_10071_c1 3300050509 Bacteria 7054
180 nmdc:mga0qj67_13846_c1 3300050509 Bacteria 6089
181 nmdc:mga08y16_43316_c1 3300050511 Bacteria 4717
182 nmdc:mga0a205_10952_c1 3300050515 Bacteria 8343
183 nmdc:mga0a205_9732_c1 3300050515 Bacteria 8805
184 Ga0495601_0043663 3300053077 Bacteria 2815
185 Ga0495612_0000147 3300053078 Bacteria 29720
186 Ga0495595_0019253 3300053084 Bacteria 2961
187 Ga0501082_0090693 3300060353 Bacteria 2639
188 Ga0307409_100115191
189 Ga0065715_10137584
190 Ga0070676_10031814
191 Ga0070683_100041850
192 Ga0070683_100098634
193 Ga0070690_100054226
194 Ga0070680_100000354
195 Ga0070680_100067657
196 Ga0070682_100000492
197 Ga0068868_100015301
198 Ga0070660_100025154
199 Ga0070691_10006984
200 Ga0070675_100003160
201 Ga0070675_100013214
202 Ga0070674_100028333
203 Ga0070659_100080739
204 Ga0070709_10000686
205 Ga0070714_100001803
206 Ga0070714_100015751
207 Ga0070714_100068125
208 Ga0070710_10003188
209 Ga0070700_100088169
210 Ga0070694_100023678
211 Ga0070708_100059578
212 Ga0070678_100036095
213 Ga0070681_10001775
214 Ga0070681_10030999
215 Ga0070707_100025390
216 Ga0070698_100001204
217 Ga0070698_100021929
218 Ga0070698_100036051
219 Ga0070698_100054300
220 Ga0070679_100010648
221 Ga0070679_100011229
222 Ga0070679_100028912
223 Ga0070684_100035450
224 Ga0070684_100146086
225 Ga0070697_100052151
226 Ga0070697_100085230
227 Ga0070686_100010990
228 Ga0070695_100010600
229 Ga0070696_100000660
230 Ga0070696_100071504
231 Ga0070693_100002140
232 Ga0070693_100019501
233 Ga0070693_100081085
234 Ga0070665_100063897
235 Ga0068852_100022758
236 Ga0068864_100041227
237 Ga0068866_10014380
238 Ga0081539_10000650
239 Ga0070716_100003069
240 Ga0075430_100000259
241 Ga0075431_100010785
242 Ga0075431_100076438
243 Ga0075433_10007884
244 Ga0075434_100002446
245 Ga0075434_100028012
246 Ga0075436_100002597
247 Ga0105240_10124811
248 Ga0111539_10029424
249 Ga0111539_10038811
250 Ga0105245_10152606
251 Ga0114129_10021186
252 Ga0105241_10000580
253 Ga0105242_10002665
254 Ga0105248_10142931
255 Ga0105238_10068569
256 Ga0105249_10000154
257 Ga0157370_10059135
258 Ga0157378_10017905
259 Ga0157372_10205234
260 Ga0182008_10004396
261 Ga0157376_10001870
262 Ga0213876_10003242
263 Ga0207682_10005041
264 Ga0207692_10058384
265 Ga0207699_10016232
266 Ga0207699_10023865
267 Ga0207645_10013044
268 Ga0207707_10002464
269 Ga0207707_10010359
270 Ga0207707_10039756
271 Ga0207660_10005402
272 Ga0207657_10004832
273 Ga0207652_10070489
274 Ga0207652_10127407
275 Ga0207646_10006906
276 Ga0207646_10041910
277 Ga0207650_10018215
278 Ga0207664_10000562
279 Ga0207664_10090951
280 Ga0207706_10000649
281 Ga0207686_10011704
282 Ga0207669_10065952
283 Ga0207691_10000761
284 Ga0207661_10053070
285 Ga0207712_10000127
286 Ga0207677_10008591
287 Ga0207639_10050717
288 Ga0207639_10057615
289 Ga0207678_10123224
290 Ga0207683_10129719
291 Ga0207698_10137059
292 Ga0268266_10059916
293 Ga0268266_10060616
294 Ga0265332_10007559
295 Ga0307408_100023172
296 Ga0265314_10002966
297 Ga0307405_10000570
298 Ga0307406_10033933
299 Ga0307407_10003057
300 Ga0307412_10008406
301 Ga0307412_10010365
302 Ga0307416_100027850
303 Ga0307416_100030510
304 Ga0307416_100075497
305 Ga0307415_100003286
306 Ga0307415_100098409
307 Ga0373959_0005825
308 Ga0373934_0000672
309 Ga0373941_0003439
310 Ga0373954_0033684
311 Ga0373956_0001645
312 Ga0373955_0000659
313 Ga0373933_0008653
314 Ga0373937_0004323
315 Ga0395899_0023417
316 Ga0395905_0082237
317 Ga0242420_001884
318 Ga0436365_0039336
319 Ga0439462_0002452
320 Ga0451577_0000001
321 Ga0451577_0063638
322 Ga0466966_0046046
323 Ga0453684_0000294
324 Ga0453684_0033197
325 Ga0466959_0029773
326 Ga0466967_0117364
327 Ga0495592_0005223
328 Ga0495629_0015018
329 Ga0495651_0000175
330 Ga0495653_0000383
331 Ga0495653_0004005
332 Ga0495662_0012295
333 Ga0495608_0000417
334 Ga0495628_0000470
335 Ga0495630_0001583
336 Ga0495665_0016711
337 Ga0495586_0054040
338 Ga0495587_0000897
339 Ga0495645_0000255
340 Ga0495645_0084924
341 Ga0495667_0000354
342 Ga0495634_0040244
343 Ga0495635_0001397
344 Ga0495635_0006376
345 Ga0495657_0005530
346 Ga0495599_0002080
347 Ga0495623_0000262
348 Ga0495646_0002426
349 Ga0495613_0074422
350 Ga0495600_0002530
351 Ga0495600_0093430
352 Ga0495604_0000212
353 Ga0495674_0138807
354 Ga0495675_0020179
355 Ga0495684_0000725
356 Ga0495602_0000161
357 Ga0496112_0045305
358 Ga0501036_0062364
359 Ga0501038_0121044
360 Ga0501041_0017151
361 Ga0501075_0034465
362 Ga0501076_0006059
363 Ga0501045_0038688
364 nmdc:mga05p37_72528_c1
365 nmdc:mga09592_46927_c1
366 nmdc:mga0qj67_10071_c1
367 nmdc:mga0qj67_13846_c1
368 nmdc:mga08y16_43316_c1
369 nmdc:mga0a205_10952_c1
370 nmdc:mga0a205_9732_c1
371 Ga0495601_0043663
372 Ga0495612_0000147
373 Ga0495595_0019253
374 Ga0501082_0090693

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22608

DNAX_ATPase_lid

DNA polymerase III clamp loader subunit, ATPase lid domain

211

259

0.96

PF12169

DNA_pol3_gamma3

DNA polymerase III subunits gamma and tau domain III

262

401

0.94

PF13177

DNA_pol3_delta2

DNA polymerase III, delta subunit

19

80

0.91

PF13177

DNA_pol3_delta2

DNA polymerase III, delta subunit

74

208

0.86

PF13401

AAA_22

AAA domain

35

188

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
1njf-assembly4.cif.gz_D nucleotide bound form of an isolated e. coli clamp loader gamma subunit 0.9315 20 262
1njf-assembly4.cif.gz_D nucleotide bound form of an isolated e. coli clamp loader gamma subunit 0.9203 20 262
2chg-assembly3.cif.gz_C replication factor c domains 1 and 2 0.8346 21 261
2chg-assembly3.cif.gz_C replication factor c domains 1 and 2 0.8141 21 261
6fhs-assembly1.cif.gz_B cryoem structure of ino80core 0.7919 137 262
ID Description Score Start End Superfamily
af_Q2G0T5_170_234_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9556 198 260 1.10.8.60
1njfB02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9525 200 257 1.10.8.60
af_A0A0P0Y837_577_637_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9496 202 262 1.10.8.60
1njgA02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9477 200 262 1.10.8.60
1jr3A03 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9464 199 259 1.10.8.60
ID Description Score Start End GO Terms
AF-A0A3B8QF51-F1-model_v4 DNA polymerase III subunit gamma/tau (EC 2.7.7.7) 0.9669 51 265 GO:0003887
GO:0005524
GO:0006261
GO:0009360
GO:0016887
GO:0046872
AF-A0A3B8QF51-F1-model_v4 DNA polymerase III subunit gamma/tau (EC 2.7.7.7) 0.9497 51 265 GO:0003887
GO:0005524
GO:0006261
GO:0009360
GO:0016887
GO:0046872
AF-K2FAC0-F1-model_v4 DNA polymerase III subunit gamma/tau (EC 2.7.7.7) 0.9468 19 262 GO:0003887
GO:0005524
GO:0006261
GO:0009360
GO:0016887
GO:0046872
AF-A0A7C4IBL3-F1-model_v4 GNAT family N-acetyltransferase 0.9391 118 262 GO:0006261
GO:0016747
AF-J4SND3-F1-model_v4 deleted 0.9361 20 278

Map