F287690

General Info

Members Datasets Scaffolds Average Seq Length
187 140 374 463

Family's Representative Sequence

Representative Sequence 3300014326|Ga0157380_10003803|Ga0157380_100038038
Length 510
Sequence MNLHGTSPWYLLQLNWAFFSKQHEISTGQAGGIKDLTMRRTITSLLILCCTASFINAQTFAQARTRATRTQLANEVKSEFLHAWNGYKKYAWGHDDLKPLSKTYHDWYAQPLLMTPVDSLDTMILMGMNDEADRTREYIIQNLSFDKDIDVQNFEITIRLLGGLLSSYQLTGDKRLLNLAEDLGQRLLPVFNSPTGLPYRYVNLKTGKVRGEVSNPAETGTLLIEFGTLAKLTNKPIFYDKAKRALVETYKRRSPIGLVGTWFNVETGEWTDTDSHISGAIDSYYEYLLKCWVLFDDRDCKKMWLDSIAAINKYLADDVMKEQKSPKGRFAVWKIWYGHADMNTGKRTATTYGALDAFFPAVLALSGDLNRAKRLQASSFKMWKHAGIEPEEFNYTTESITSPRYPLRPEIVESTYYLFHYTKDVGYQRDGEELWKDFVKYCRTEEGYAALKDVVTKEKSDSMQSFLFAETFKYFYLLFAPPSTLDFDRVIFNTEAHPIRRTAKTIRRLR

Samples

Sample ID Description Type Environment
1 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
4 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
5 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
6 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
9 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
10 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
11 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
12 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
13 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
14 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
15 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
16 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
17 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
18 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
19 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
20 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
21 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
22 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
23 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
24 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
25 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
26 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
27 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
28 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
29 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
30 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
31 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
32 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
33 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
34 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
35 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
36 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
37 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
38 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
39 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
40 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
41 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
42 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
43 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
44 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
45 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
46 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
47 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
48 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
49 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
50 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
51 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
52 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
53 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
54 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
55 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
56 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
57 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
58 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
59 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
60 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
61 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
62 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
63 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
64 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
65 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
66 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
67 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
68 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
69 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
70 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
101 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
102 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
103 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
104 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
105 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
106 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
107 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
108 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
109 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
110 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
111 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
112 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
113 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
114 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
115 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
116 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
117 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
118 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
119 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
120 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
121 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
122 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
123 3300049521 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought Metagenome Rhizosphere
124 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
126 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
127 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
128 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
130 3300049851 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_B_0_drought Metagenome Rhizosphere
131 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
132 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
133 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
134 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
135 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
136 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
137 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
138 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
139 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
140 2643221559 Lysobacter sp. Root559 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.47
Metatranscriptomes 0
Isolates 0.53

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.14
Nodule 0
Rhizoplane 1.6
Rhizosphere 93.05
Stem 0
Stem Tuber 0
Unclassified 8.02

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157380_10003803 3300014326 Bacteria 10385
2 JGI25406J46586_10039951 3300003203 Bacteria 1668
3 JGI25405J52794_10006770 3300003911 Bacteria 2098
4 Ga0065704_10104563 3300005289 Bacteria 2136
5 Ga0065707_10095884 3300005295 Unclassified 3312
6 Ga0070690_100017686 3300005330 Bacteria 4293
7 Ga0070670_100006378 3300005331 Bacteria 9985
8 Ga0070670_100042787 3300005331 Bacteria 3895
9 Ga0070670_100085494 3300005331 Bacteria 2710
10 Ga0070670_100095080 3300005331 Bacteria 2563
11 Ga0070670_100114927 3300005331 Bacteria 2320
12 Ga0070680_100180010 3300005336 Bacteria 1780
13 Ga0070682_100000068 3300005337 Bacteria 96186
14 Ga0068868_100045894 3300005338 Bacteria 3419
15 Ga0068868_100072178 3300005338 Bacteria 2754
16 Ga0070689_100002981 3300005340 Bacteria 11132
17 Ga0070661_100064507 3300005344 Bacteria 2691
18 Ga0070668_100000475 3300005347 Bacteria 26580
19 Ga0070671_100021564 3300005355 Bacteria 5261
20 Ga0070674_100116369 3300005356 Bacteria 1972
21 Ga0070673_100020407 3300005364 Bacteria 4780
22 Ga0070673_100040664 3300005364 Bacteria 3569
23 Ga0070673_100044569 3300005364 Bacteria 3435
24 Ga0070673_100088242 3300005364 Bacteria 2529
25 Ga0070688_100011199 3300005365 Bacteria 4980
26 Ga0070667_100130688 3300005367 Bacteria 2191
27 Ga0070667_100254957 3300005367 Bacteria 1569
28 Ga0070703_10018119 3300005406 Unclassified 2033
29 Ga0070714_100007633 3300005435 Bacteria 8422
30 Ga0070701_10108094 3300005438 Bacteria 1550
31 Ga0070705_100028307 3300005440 Unclassified 3068
32 Ga0070663_100010456 3300005455 Bacteria 5784
33 Ga0070662_100008241 3300005457 Bacteria 6786
34 Ga0070681_10053815 3300005458 Bacteria 4011
35 Ga0068867_100126768 3300005459 Bacteria 1979
36 Ga0070706_100099993 3300005467 Bacteria 2694
37 Ga0070706_100210325 3300005467 Bacteria 1816
38 Ga0070697_100001894 3300005536 Bacteria 15994
39 Ga0070697_100004854 3300005536 Bacteria 10314
40 Ga0070697_100055958 3300005536 Unclassified 3208
41 Ga0070697_100113664 3300005536 Bacteria 2259
42 Ga0068853_100027213 3300005539 Unclassified 4804
43 Ga0068853_100053251 3300005539 Bacteria 3485
44 Ga0068853_100081140 3300005539 Bacteria 2839
45 Ga0068853_100109551 3300005539 Bacteria 2451
46 Ga0068853_100166612 3300005539 Bacteria 1991
47 Ga0070695_100059694 3300005545 Bacteria 2470
48 Ga0070696_100104774 3300005546 Bacteria 2031
49 Ga0070665_100058839 3300005548 Bacteria 3852
50 Ga0070704_100107019 3300005549 Unclassified 2120
51 Ga0068855_100176228 3300005563 Bacteria 2419
52 Ga0070664_100239026 3300005564 Unclassified 1630
53 Ga0068857_100052039 3300005577 Bacteria 3634
54 Ga0068856_100024906 3300005614 Bacteria 5830
55 Ga0070702_100091311 3300005615 Bacteria 1847
56 Ga0068852_100084687 3300005616 Bacteria 2822
57 Ga0068864_100019639 3300005618 Bacteria 5653
58 Ga0068851_10001914 3300005834 Bacteria 9157
59 Ga0068870_10048131 3300005840 Bacteria 2244
60 Ga0068858_100022060 3300005842 Bacteria 5946
61 Ga0068858_100107320 3300005842 Bacteria 2606
62 Ga0081455_10014112 3300005937 Bacteria 7853
63 Ga0081540_1002382 3300005983 Bacteria 15355
64 Ga0070715_10000005 3300006163 Bacteria 298716
65 Ga0097621_100054993 3300006237 Bacteria 3249
66 Ga0097621_100161111 3300006237 Bacteria 1929
67 Ga0075431_100038539 3300006847 Bacteria 4922
68 Ga0068865_100002278 3300006881 Bacteria 11303
69 Ga0075436_100000012 3300006914 Bacteria 188052
70 Ga0075435_100000250 3300007076 Bacteria 33338
71 Ga0099794_10002801 3300007265 Bacteria 6524
72 Ga0105240_10107231 3300009093 Unclassified 3387
73 Ga0111539_10005576 3300009094 Bacteria 16274
74 Ga0114129_10089760 3300009147 Bacteria 4260
75 Ga0114129_10161714 3300009147 Bacteria 3058
76 Ga0114129_10163124 3300009147 Bacteria 3043
77 Ga0105241_10173139 3300009174 Bacteria 1784
78 Ga0105238_10032049 3300009551 Bacteria 5349
79 Ga0105249_10000381 3300009553 Bacteria 44082
80 Ga0105249_10034899 3300009553 Bacteria 4559
81 Ga0157370_10102776 3300013104 Unclassified 2675
82 Ga0157374_10196520 3300013296 Bacteria 1974
83 Ga0157378_10000018 3300013297 Bacteria 134075
84 Ga0163162_10000023 3300013306 Bacteria 193395
85 Ga0157372_10078844 3300013307 Bacteria 3723
86 Ga0157372_10224256 3300013307 Bacteria 2179
87 Ga0157375_10227361 3300013308 Bacteria 2024
88 Ga0163163_10115201 3300014325 Bacteria 2719
89 Ga0157380_10025092 3300014326 Bacteria 4518
90 Ga0157380_10109276 3300014326 Bacteria 2320
91 Ga0157380_10175943 3300014326 Bacteria 1875
92 Ga0157379_10136686 3300014968 Bacteria 2208
93 Ga0163161_10000733 3300017792 Bacteria 25815
94 Ga0163161_10062937 3300017792 Bacteria 2703
95 Ga0213876_10000006 3300021384 Bacteria 700803
96 Ga0213876_10000076 3300021384 Bacteria 116109
97 Ga0209025_1022281 3300025294 Bacteria 3367
98 Ga0207656_10014821 3300025321 Bacteria 3011
99 Ga0207680_10004164 3300025903 Bacteria 6848
100 Ga0207647_10000023 3300025904 Bacteria 115648
101 Ga0207685_10000065 3300025905 Bacteria 28161
102 Ga0207707_10163086 3300025912 Bacteria 1948
103 Ga0207695_10025062 3300025913 Bacteria 6691
104 Ga0207695_10042849 3300025913 Bacteria 4828
105 Ga0207694_10013359 3300025924 Bacteria 6184
106 Ga0207650_10012688 3300025925 Bacteria 5817
107 Ga0207650_10038892 3300025925 Bacteria 3476
108 Ga0207650_10074246 3300025925 Bacteria 2563
109 Ga0207664_10025022 3300025929 Bacteria 4489
110 Ga0207644_10003704 3300025931 Bacteria 9903
111 Ga0207644_10184496 3300025931 Unclassified 1637
112 Ga0207706_10002543 3300025933 Bacteria 17778
113 Ga0207691_10047693 3300025940 Bacteria 3930
114 Ga0207691_10054953 3300025940 Bacteria 3631
115 Ga0207691_10073892 3300025940 Unclassified 3075
116 Ga0207689_10085428 3300025942 Bacteria 2594
117 Ga0207651_10001091 3300025960 Bacteria 12043
118 Ga0207651_10066825 3300025960 Bacteria 2528
119 Ga0207712_10000214 3300025961 Bacteria 57860
120 Ga0207712_10000228 3300025961 Bacteria 55397
121 Ga0207668_10000963 3300025972 Bacteria 17343
122 Ga0207668_10029639 3300025972 Bacteria 3588
123 Ga0207640_10007748 3300025981 Bacteria 5931
124 Ga0207658_10187111 3300025986 Bacteria 1718
125 Ga0207703_10015238 3300026035 Bacteria 5998
126 Ga0207639_10000405 3300026041 Bacteria 29812
127 Ga0207678_10011846 3300026067 Bacteria 7656
128 Ga0207678_10094733 3300026067 Bacteria 2551
129 Ga0207708_10026017 3300026075 Bacteria 4427
130 Ga0207702_10090995 3300026078 Bacteria 2670
131 Ga0207641_10311640 3300026088 Bacteria 1490
132 Ga0207648_10036156 3300026089 Bacteria 4351
133 Ga0207676_10060733 3300026095 Bacteria 2991
134 Ga0207676_10069552 3300026095 Unclassified 2819
135 Ga0207674_10067379 3300026116 Bacteria 3604
136 Ga0207675_100097825 3300026118 Bacteria 2764
137 Ga0207675_100271856 3300026118 Bacteria 1645
138 Ga0268266_10000013 3300028379 Bacteria 649715
139 Ga0268265_10096052 3300028380 Bacteria 2381
140 Ga0265338_10045498 3300028800 Bacteria 4034
141 Ga0307513_10007563 3300031456 Bacteria 14040
142 Ga0307408_100076594 3300031548 Bacteria 2489
143 Ga0307405_10006074 3300031731 Bacteria 5909
144 Ga0307413_10000495 3300031824 Bacteria 12960
145 Ga0307413_10019267 3300031824 Bacteria 3600
146 Ga0307410_10000588 3300031852 Bacteria 14981
147 Ga0307410_10010584 3300031852 Bacteria 5232
148 Ga0307406_10044205 3300031901 Bacteria 2791
149 Ga0307412_10012954 3300031911 Unclassified 4876
150 Ga0307409_100000764 3300031995 Bacteria 14536
151 Ga0307409_100073354 3300031995 Bacteria 2729
152 Ga0307416_100032916 3300032002 Unclassified 3924
153 Ga0307416_100098147 3300032002 Bacteria 2540
154 Ga0307411_10000895 3300032005 Bacteria 11279
155 Ga0307415_100072988 3300032126 Bacteria 2419
156 Ga0307415_100102101 3300032126 Bacteria 2106
157 Ga0395898_0128043 3300037466 Bacteria 2432
158 Ga0436365_0695157 3300039437 Bacteria 511493
159 Ga0436361_0640531 3300039447 Bacteria 5616
160 Ga0451853_2586908 3300041512 Bacteria 1380
161 Ga0495638_0061169 3300046460 Bacteria 2328
162 Ga0495663_0000210 3300046525 Bacteria 23336
163 Ga0495598_0000017 3300046537 Bacteria 26422
164 Ga0495598_0001439 3300046537 Bacteria 4718
165 Ga0495668_0001291 3300046616 Bacteria 24736
166 Ga0496106_0047665 3300048909 Bacteria 3226
167 Ga0496111_0035854 3300048914 Bacteria 3546
168 Ga0496115_0002099 3300048918 Bacteria 14267
169 Ga0501298_000211 3300049521 Bacteria 7430
170 Ga0501038_0125873 3300049574 Bacteria 2109
171 Ga0501217_002631 3300049661 Bacteria 3556
172 Ga0501249_008174 3300049679 Bacteria 2169
173 Ga0501080_0020676 3300049742 Bacteria 6097
174 Ga0501035_0008682 3300049822 Bacteria 9460
175 Ga0501044_0006048 3300049823 Bacteria 13359
176 Ga0501044_0008929 3300049823 Bacteria 10956
177 Ga0501212_000607 3300049851 Bacteria 3591
178 nmdc:mga05p37_169266_c1 3300050507 Bacteria 2665
179 nmdc:mga08y16_14834_c1 3300050511 Bacteria 8194
180 nmdc:mga0n895_46365_c1 3300050512 Bacteria 4246
181 nmdc:mga08x19_5_c1 3300050514 Bacteria 464292
182 nmdc:mga0a205_151129_c1 3300050515 Unclassified 2221
183 Ga0500651_0003073 3300053093 Bacteria 9032
184 Ga0500568_0000903 3300053139 Bacteria 20576
185 Ga0500616_0003111 3300053153 Bacteria 12975
186 Ga0530510_0035371 3300061734 Bacteria 3600
187 2643818132 2643221559 Bacteria 4424915
188 Ga0157380_10003803
189 JGI25406J46586_10039951
190 JGI25405J52794_10006770
191 Ga0065704_10104563
192 Ga0065707_10095884
193 Ga0070690_100017686
194 Ga0070670_100006378
195 Ga0070670_100042787
196 Ga0070670_100085494
197 Ga0070670_100095080
198 Ga0070670_100114927
199 Ga0070680_100180010
200 Ga0070682_100000068
201 Ga0068868_100045894
202 Ga0068868_100072178
203 Ga0070689_100002981
204 Ga0070661_100064507
205 Ga0070668_100000475
206 Ga0070671_100021564
207 Ga0070674_100116369
208 Ga0070673_100020407
209 Ga0070673_100040664
210 Ga0070673_100044569
211 Ga0070673_100088242
212 Ga0070688_100011199
213 Ga0070667_100130688
214 Ga0070667_100254957
215 Ga0070703_10018119
216 Ga0070714_100007633
217 Ga0070701_10108094
218 Ga0070705_100028307
219 Ga0070663_100010456
220 Ga0070662_100008241
221 Ga0070681_10053815
222 Ga0068867_100126768
223 Ga0070706_100099993
224 Ga0070706_100210325
225 Ga0070697_100001894
226 Ga0070697_100004854
227 Ga0070697_100055958
228 Ga0070697_100113664
229 Ga0068853_100027213
230 Ga0068853_100053251
231 Ga0068853_100081140
232 Ga0068853_100109551
233 Ga0068853_100166612
234 Ga0070695_100059694
235 Ga0070696_100104774
236 Ga0070665_100058839
237 Ga0070704_100107019
238 Ga0068855_100176228
239 Ga0070664_100239026
240 Ga0068857_100052039
241 Ga0068856_100024906
242 Ga0070702_100091311
243 Ga0068852_100084687
244 Ga0068864_100019639
245 Ga0068851_10001914
246 Ga0068870_10048131
247 Ga0068858_100022060
248 Ga0068858_100107320
249 Ga0081455_10014112
250 Ga0081540_1002382
251 Ga0070715_10000005
252 Ga0097621_100054993
253 Ga0097621_100161111
254 Ga0075431_100038539
255 Ga0068865_100002278
256 Ga0075436_100000012
257 Ga0075435_100000250
258 Ga0099794_10002801
259 Ga0105240_10107231
260 Ga0111539_10005576
261 Ga0114129_10089760
262 Ga0114129_10161714
263 Ga0114129_10163124
264 Ga0105241_10173139
265 Ga0105238_10032049
266 Ga0105249_10000381
267 Ga0105249_10034899
268 Ga0157370_10102776
269 Ga0157374_10196520
270 Ga0157378_10000018
271 Ga0163162_10000023
272 Ga0157372_10078844
273 Ga0157372_10224256
274 Ga0157375_10227361
275 Ga0163163_10115201
276 Ga0157380_10025092
277 Ga0157380_10109276
278 Ga0157380_10175943
279 Ga0157379_10136686
280 Ga0163161_10000733
281 Ga0163161_10062937
282 Ga0213876_10000006
283 Ga0213876_10000076
284 Ga0209025_1022281
285 Ga0207656_10014821
286 Ga0207680_10004164
287 Ga0207647_10000023
288 Ga0207685_10000065
289 Ga0207707_10163086
290 Ga0207695_10025062
291 Ga0207695_10042849
292 Ga0207694_10013359
293 Ga0207650_10012688
294 Ga0207650_10038892
295 Ga0207650_10074246
296 Ga0207664_10025022
297 Ga0207644_10003704
298 Ga0207644_10184496
299 Ga0207706_10002543
300 Ga0207691_10047693
301 Ga0207691_10054953
302 Ga0207691_10073892
303 Ga0207689_10085428
304 Ga0207651_10001091
305 Ga0207651_10066825
306 Ga0207712_10000214
307 Ga0207712_10000228
308 Ga0207668_10000963
309 Ga0207668_10029639
310 Ga0207640_10007748
311 Ga0207658_10187111
312 Ga0207703_10015238
313 Ga0207639_10000405
314 Ga0207678_10011846
315 Ga0207678_10094733
316 Ga0207708_10026017
317 Ga0207702_10090995
318 Ga0207641_10311640
319 Ga0207648_10036156
320 Ga0207676_10060733
321 Ga0207676_10069552
322 Ga0207674_10067379
323 Ga0207675_100097825
324 Ga0207675_100271856
325 Ga0268266_10000013
326 Ga0268265_10096052
327 Ga0265338_10045498
328 Ga0307513_10007563
329 Ga0307408_100076594
330 Ga0307405_10006074
331 Ga0307413_10000495
332 Ga0307413_10019267
333 Ga0307410_10000588
334 Ga0307410_10010584
335 Ga0307406_10044205
336 Ga0307412_10012954
337 Ga0307409_100000764
338 Ga0307409_100073354
339 Ga0307416_100032916
340 Ga0307416_100098147
341 Ga0307411_10000895
342 Ga0307415_100072988
343 Ga0307415_100102101
344 Ga0395898_0128043
345 Ga0436365_0695157
346 Ga0436361_0640531
347 Ga0451853_2586908
348 Ga0495638_0061169
349 Ga0495663_0000210
350 Ga0495598_0000017
351 Ga0495598_0001439
352 Ga0495668_0001291
353 Ga0496106_0047665
354 Ga0496111_0035854
355 Ga0496115_0002099
356 Ga0501298_000211
357 Ga0501038_0125873
358 Ga0501217_002631
359 Ga0501249_008174
360 Ga0501080_0020676
361 Ga0501035_0008682
362 Ga0501044_0006048
363 Ga0501044_0008929
364 Ga0501212_000607
365 nmdc:mga05p37_169266_c1
366 nmdc:mga08y16_14834_c1
367 nmdc:mga0n895_46365_c1
368 nmdc:mga08x19_5_c1
369 nmdc:mga0a205_151129_c1
370 Ga0500651_0003073
371 Ga0500568_0000903
372 Ga0500616_0003111
373 Ga0530510_0035371
374 2643818132

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01532

Glyco_hydro_47

Glycosyl hydrolase family 47

79

501

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
8b5m-assembly1.cif.gz_A crystal structure of gh47 alpha-1,2-mannosidase from caulobacter k31 strain in complex with cyclosulfamidate inhibitor 0.9761 35 456
5ne5-assembly1.cif.gz_A crystal structure of family 47 alpha-1,2-mannosidase from caulobacter k31 strain in complex with kifunensine 0.9702 35 456
5kkb-assembly2.cif.gz_B structure of mouse golgi alpha-1,2-mannosidase ia and man9glcnac2-pa complex 0.9521 32 459
1dl2-assembly1.cif.gz_A crystal structure of class i alpha-1,2-mannosidase from saccharomyces cerevisiae at 1.54 angstrom resolution 0.9482 37 459
8b5m-assembly1.cif.gz_A crystal structure of gh47 alpha-1,2-mannosidase from caulobacter k31 strain in complex with cyclosulfamidate inhibitor 0.9474 35 456
ID Description Score Start End Superfamily
4ayrA00 Mainly Alpha;Alpha/alpha barrel;Glycosyltransferase; 0.9711 35 456 1.50.10.10
af_Q550P3_1_410_1.50.10.10 Mainly Alpha;Alpha/alpha barrel;Glycosyltransferase; 0.9653 48 435 1.50.10.10
af_O94726_25_489_1.50.10.10 Mainly Alpha;Alpha/alpha barrel;Glycosyltransferase; 0.962 37 458 1.50.10.10
af_Q925U4_116_592_1.50.10.10 Mainly Alpha;Alpha/alpha barrel;Glycosyltransferase; 0.9586 37 456 1.50.10.10
af_Q8BJT9_28_487_1.50.10.10 Mainly Alpha;Alpha/alpha barrel;Glycosyltransferase; 0.9554 34 457 1.50.10.10
ID Description Score Start End GO Terms
AF-A0A534K8H5-F1-model_v4 Glycoside hydrolase family 47 protein 0.9987 36 456 GO:0004571
GO:0005509
GO:0005975
GO:0016020
GO:1904380
AF-A0A2V5WI90-F1-model_v4 Glycoside hydrolase family 47 0.9986 38 260 GO:0004571
GO:0005509
GO:0005975
GO:0016020
GO:1904380
AF-A0A357F6G0-F1-model_v4 Glycoside hydrolase family 47 0.9945 250 414 GO:0004571
GO:0005509
GO:0005975
GO:0016020
GO:1904380
AF-A0A2V5PS06-F1-model_v4 Glycoside hydrolase family 47 0.9942 133 459 GO:0004571
GO:0005509
GO:0005975
GO:0016020
GO:1904380
AF-A0A4R3ULR5-F1-model_v4 Glycosyl hydrolase family 47 0.991 180 456 GO:0004571
GO:0005509
GO:0005975
GO:0016020
GO:1904380

Map