F287293

General Info

Members Datasets Scaffolds Average Seq Length
187 153 374 392

Family's Representative Sequence

Representative Sequence 3300005458|Ga0070681_10158345|Ga0070681_101583453
Length 434
Sequence MRLVTTNRRIKFTRRALYPRRGFRKSESVITSPKNLRTGRSIWQGRRSPKVPVHALKRDIESDVLIIGAGITGAMIADSLSAAGLKIAVADKRGPAKGSTIASTAMVLYEIDTPLTTLSRKIGKADAARAWRRSRLAVDAIAARLGELGVPDVARRNSLYLAGNVLDPKGLLREQEARRAVGLASRFFDRRTLHDKFGIRAEAAIAGFGDLAVDPRKATLGLLEAACEQGATIYAPVEIVDIDAKRSSVIATAANGRRIRVRHLVFATGYEFPDSVPRKGHKIVSTWAIATVPQPRRLWRGQDMIWEASEPYLYLRTTSDGRVICGGEDEDVSDAQTRDALLPAKTETLRRKLGRLMPGLDTNVAFRWTGSFGQTETGLPTIGKVPALRNCWVALGYGGNGITYSRIAADIITGALTGKPDIDADLYDFPRRSL

Samples

Sample ID Description Type Environment
1 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
5 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
6 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
7 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
8 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
9 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
12 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
13 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
14 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
15 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
16 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
17 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
20 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
21 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
22 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
23 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
24 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
25 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
26 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
27 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
28 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
29 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
30 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
31 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
32 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
33 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
34 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
35 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
36 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
37 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
41 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
43 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
44 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
45 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
46 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
47 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
48 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
49 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
50 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
51 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
52 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
53 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
54 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
55 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
57 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
83 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
84 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
85 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
86 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
87 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
88 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
89 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
90 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
91 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
92 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
93 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
94 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
95 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
96 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
97 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
98 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
99 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
100 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
101 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
102 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
103 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
104 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
105 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
106 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
108 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
115 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
116 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
117 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
118 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
119 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
120 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
121 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
122 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
123 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
124 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
125 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
126 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
127 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
128 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
129 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
130 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
131 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
132 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
133 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
134 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
135 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
136 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
137 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
138 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
139 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
140 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
141 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
142 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
143 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
144 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
145 2582581308 Rhizobium sp. OK494 Isolate Rhizosphere
146 2585427527 Rhizobium lusitanum YR374 Isolate Rhizosphere
147 2585427530 Rhizobium tropici YR635 Isolate Rhizosphere
148 2615840626 Rhizobium lusitanum P1-7 Isolate Nodule
149 2758568016 [Ochrobactrum] quorumnocens A44 Isolate Rhizosphere
150 2818991453 Rhizobium lusitanum 1158 Isolate Unclassified
151 2821123053 Rhizobium cellulosilyticum 1193 Isolate Unclassified
152 2857531043 Neorhizobium sp. R-72160 Isolate Unclassified
153 2899803654 Agrobacterium sp. a22-2 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.19
Metatranscriptomes 0
Isolates 4.81

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.97
Nodule 1.07
Rhizoplane 0.53
Rhizosphere 73.26
Stem 0
Stem Tuber 0
Unclassified 4.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070681_10158345 3300005458 Bacteria 2188
2 Ga0070683_100055819 3300005329 Bacteria 3666
3 Ga0070680_100001115 3300005336 Bacteria 19301
4 Ga0070689_100076183 3300005340 Bacteria 2627
5 Ga0070669_100040227 3300005353 Bacteria 3398
6 Ga0070671_100085308 3300005355 Bacteria 2641
7 Ga0070674_100038249 3300005356 Bacteria 3232
8 Ga0070673_100137033 3300005364 Bacteria 2061
9 Ga0070688_100095680 3300005365 Bacteria 1950
10 Ga0070667_100092278 3300005367 Bacteria 2605
11 Ga0070678_100077869 3300005456 Bacteria 2502
12 Ga0070662_100018765 3300005457 Bacteria 4684
13 Ga0068867_100062641 3300005459 Bacteria 2764
14 Ga0070679_100010251 3300005530 Bacteria 8885
15 Ga0070684_100066508 3300005535 Bacteria 3164
16 Ga0070672_100077928 3300005543 Bacteria 2651
17 Ga0070686_100165608 3300005544 Bacteria 1559
18 Ga0070665_100135665 3300005548 Bacteria 2463
19 Ga0070665_100215262 3300005548 Bacteria 1922
20 Ga0068857_100166260 3300005577 Bacteria 2003
21 Ga0068854_100125033 3300005578 Bacteria 1957
22 Ga0068852_100187475 3300005616 Bacteria 1949
23 Ga0068852_100214196 3300005616 Bacteria 1829
24 Ga0068866_10057747 3300005718 Bacteria 2001
25 Ga0081455_10049688 3300005937 Unclassified 3614
26 Ga0070717_10111721 3300006028 Bacteria 2332
27 Ga0075365_10076372 3300006038 Bacteria 2261
28 Ga0075368_10013138 3300006042 Bacteria 3038
29 Ga0075363_100001823 3300006048 Bacteria 8358
30 Ga0075363_100009694 3300006048 Bacteria 4534
31 Ga0075364_10011713 3300006051 Bacteria 5336
32 Ga0075364_10069050 3300006051 Bacteria 2325
33 Ga0075362_10001428 3300006177 Bacteria 7621
34 Ga0075369_10037407 3300006186 Bacteria 2067
35 Ga0075366_10003843 3300006195 Bacteria 7999
36 Ga0075366_10024220 3300006195 Bacteria 3541
37 Ga0075370_10006535 3300006353 Bacteria 5871
38 Ga0075370_10015777 3300006353 Bacteria 4052
39 Ga0075428_100020942 3300006844 Bacteria 7242
40 Ga0075428_100337296 3300006844 Bacteria 1619
41 Ga0075431_100004714 3300006847 Bacteria 13394
42 Ga0075434_100113185 3300006871 Bacteria 2725
43 Ga0075429_100012760 3300006880 Bacteria 7289
44 Ga0079104_1000014 3300006946 Bacteria 337362
45 Ga0105240_10000097 3300009093 Bacteria 179135
46 Ga0105240_10284728 3300009093 Bacteria 1897
47 Ga0111539_10107698 3300009094 Bacteria 3270
48 Ga0111539_10223344 3300009094 Unclassified 2194
49 Ga0105245_10036112 3300009098 Bacteria 4389
50 Ga0114129_10007862 3300009147 Bacteria 15174
51 Ga0114129_10083977 3300009147 Bacteria 4422
52 Ga0105243_10085771 3300009148 Bacteria 2581
53 Ga0105243_10172482 3300009148 Bacteria 1875
54 Ga0105248_10073445 3300009177 Bacteria 3844
55 Ga0105237_10002422 3300009545 Bacteria 23163
56 Ga0105238_10063647 3300009551 Bacteria 3689
57 Ga0105239_10000258 3300010375 Bacteria 78849
58 Ga0157378_10235375 3300013297 Bacteria 1747
59 Ga0163162_10146957 3300013306 Bacteria 2474
60 Ga0157372_10040687 3300013307 Bacteria 5135
61 Ga0163163_10254994 3300014325 Bacteria 1805
62 Ga0157380_10127178 3300014326 Bacteria 2168
63 Ga0182007_10001724 3300015262 Bacteria 11518
64 Ga0182005_1007707 3300015265 Bacteria 3215
65 Ga0163161_10173238 3300017792 Bacteria 1651
66 Ga0209677_100172 3300025253 Bacteria 55396
67 Ga0209233_1000162 3300025261 Bacteria 156508
68 Ga0207682_10001593 3300025893 Bacteria 10438
69 Ga0207688_10035462 3300025901 Bacteria 2764
70 Ga0207643_10027459 3300025908 Bacteria 3156
71 Ga0207707_10044380 3300025912 Bacteria 3877
72 Ga0207695_10000187 3300025913 Bacteria 179183
73 Ga0207671_10019611 3300025914 Bacteria 5168
74 Ga0207660_10004645 3300025917 Bacteria 8949
75 Ga0207662_10021356 3300025918 Bacteria 3700
76 Ga0207657_10048971 3300025919 Bacteria 3686
77 Ga0207649_10172026 3300025920 Bacteria 1510
78 Ga0207652_10058760 3300025921 Bacteria 3313
79 Ga0207706_10030022 3300025933 Bacteria 4852
80 Ga0207669_10013509 3300025937 Bacteria 4057
81 Ga0207691_10071506 3300025940 Bacteria 3130
82 Ga0207661_10159801 3300025944 Bacteria 1954
83 Ga0207679_10280401 3300025945 Bacteria 1429
84 Ga0207703_10082190 3300026035 Bacteria 2687
85 Ga0207639_10123854 3300026041 Bacteria 2129
86 Ga0207702_10148396 3300026078 Bacteria 2131
87 Ga0207641_10392775 3300026088 Bacteria 1331
88 Ga0207648_10184529 3300026089 Bacteria 1847
89 Ga0207675_100108670 3300026118 Bacteria 2616
90 Ga0207683_10025759 3300026121 Bacteria 5073
91 Ga0207698_10257098 3300026142 Bacteria 1602
92 Ga0268266_10115972 3300028379 Bacteria 2378
93 Ga0268266_10244879 3300028379 Bacteria 1656
94 Ga0265340_10004478 3300031247 Bacteria 7801
95 Ga0265340_10017310 3300031247 Bacteria 3727
96 Ga0265316_10037849 3300031344 Bacteria 3890
97 Ga0265313_10005514 3300031595 Bacteria 9274
98 Ga0265313_10045663 3300031595 Bacteria 2131
99 Ga0265342_10007175 3300031712 Bacteria 8200
100 Ga0265342_10036859 3300031712 Bacteria 2985
101 Ga0373925_0114428 3300037068 Unclassified 2088
102 Ga0439460_0018955 3300042461 Bacteria 1858
103 Ga0495638_0074110 3300046460 Bacteria 2077
104 Ga0495605_0032571 3300046474 Bacteria 2653
105 Ga0495640_0093540 3300046533 Bacteria 1981
106 Ga0495598_0011058 3300046537 Bacteria 2179
107 Ga0495674_0055382 3300047319 Bacteria 3479
108 Ga0495672_0080458 3300047320 Bacteria 1817
109 Ga0495681_0023462 3300047470 Bacteria 3276
110 Ga0496103_0014764 3300048906 Bacteria 4643
111 Ga0496116_0000533 3300048919 Bacteria 51092
112 Ga0496117_0001441 3300048920 Bacteria 34282
113 Ga0496117_0015176 3300048920 Bacteria 6588
114 Ga0496118_0001114 3300048921 Bacteria 41696
115 Ga0496119_0034151 3300048922 Bacteria 3356
116 Ga0496119_0059550 3300048922 Bacteria 2293
117 Ga0496120_0007577 3300048923 Bacteria 8052
118 Ga0496121_0009558 3300048924 Bacteria 11110
119 Ga0496121_0021069 3300048924 Bacteria 6408
120 Ga0496122_0007577 3300048925 Bacteria 12007
121 Ga0496122_0046394 3300048925 Bacteria 3366
122 Ga0496123_0007594 3300048926 Bacteria 10157
123 Ga0496124_0064972 3300048927 Bacteria 3044
124 Ga0496125_0000143 3300048928 Bacteria 156688
125 Ga0496125_0004662 3300048928 Bacteria 15637
126 Ga0501034_0040394 3300049571 Bacteria 4722
127 Ga0501034_0130275 3300049571 Bacteria 2499
128 Ga0501036_0175607 3300049572 Bacteria 1804
129 Ga0501038_0060615 3300049574 Plasmid 3238
130 Ga0501039_0072871 3300049575 Plasmid 2669
131 Ga0501040_0133533 3300049576 Unclassified 1746
132 Ga0501043_0103954 3300049579 Bacteria 2232
133 Ga0501047_0080770 3300049581 Bacteria 3125
134 Ga0501047_0163677 3300049581 Bacteria 2096
135 Ga0501047_0227664 3300049581 Bacteria 1719
136 Ga0501048_0005985 3300049582 Bacteria 9268
137 Ga0501067_0092988 3300049583 Bacteria 1674
138 Ga0501069_0010263 3300049585 Bacteria 4957
139 Ga0501072_0042203 3300049588 Bacteria 3583
140 Ga0501073_0026497 3300049589 Bacteria 4153
141 Ga0501073_0034744 3300049589 Bacteria 3586
142 Ga0501073_0061510 3300049589 Bacteria 2620
143 Ga0501080_0014444 3300049742 Bacteria 7274
144 Ga0501080_0043966 3300049742 Bacteria 4159
145 Ga0501081_0128224 3300049743 Unclassified 1811
146 Ga0501083_0024968 3300049744 Unclassified 4139
147 Ga0501083_0028051 3300049744 Bacteria 3881
148 Ga0501083_0051399 3300049744 Bacteria 2771
149 Ga0501083_0072671 3300049744 Bacteria 2286
150 Ga0501045_0052035 3300049824 Plasmid 2989
151 nmdc:mga00v17_164781_c1 3300050491 Bacteria 1428
152 nmdc:mga00v17_8962_c1 3300050491 Bacteria 5398
153 nmdc:mga0k408_3288_c1 3300050493 Bacteria 8557
154 nmdc:mga06z11_59864_c1 3300050494 Bacteria 1981
155 nmdc:mga07m45_38320_c1 3300050496 Bacteria 2674
156 nmdc:mga05p37_190027_c1 3300050507 Bacteria 2494
157 nmdc:mga05p37_2728_c1 3300050507 Bacteria 20515
158 nmdc:mga09592_6646_c1 3300050508 Bacteria 9418
159 nmdc:mga0qj67_24567_c1 3300050509 Unclassified 4647
160 nmdc:mga06r32_9783_c1 3300050510 Bacteria 8657
161 nmdc:mga08y16_192481_c1 3300050511 Unclassified 2115
162 nmdc:mga08y16_73764_c1 3300050511 Bacteria 3555
163 nmdc:mga0n895_152035_c1 3300050512 Bacteria 2345
164 nmdc:mga0a205_11509_c1 3300050515 Bacteria 8148
165 nmdc:mga0a205_121886_c1 3300050515 Unclassified 2507
166 Ga0500610_0053875 3300053079 Bacteria 2097
167 Ga0500641_0004355 3300053096 Bacteria 4998
168 Ga0500608_034826 3300053122 Bacteria 2399
169 Ga0500618_019620 3300053125 Bacteria 1662
170 Ga0500559_0042051 3300053136 Bacteria 1993
171 Ga0500573_0011525 3300053140 Bacteria 4952
172 Ga0500616_0022839 3300053153 Bacteria 3491
173 Ga0500622_0003327 3300053156 Bacteria 10848
174 Ga0500636_0042217 3300053177 Bacteria 2695
175 Ga0501084_0137650 3300054114 Bacteria 2055
176 Ga0501082_0000010 3300060353 Bacteria 122899
177 Ga0501082_0157237 3300060353 Bacteria 1975
178 Ga0530510_0014216 3300061734 Bacteria 5611
179 2585277876 2582581308 Bacteria 7413247
180 2585533261 2585427527 Bacteria 7273426
181 2585555681 2585427530 Bacteria 7383882
182 2616309201 2615840626 Bacteria 7921970
183 2758637911 2758568016 Bacteria 5645291
184 2819641892 2818991453 Bacteria 7181617
185 2821129072 2821123053 Bacteria 7836056
186 2857536338 2857531043 Bacteria 6754041
187 2899805547 2899803654 Bacteria 5577784
188 Ga0070681_10158345
189 Ga0070683_100055819
190 Ga0070680_100001115
191 Ga0070689_100076183
192 Ga0070669_100040227
193 Ga0070671_100085308
194 Ga0070674_100038249
195 Ga0070673_100137033
196 Ga0070688_100095680
197 Ga0070667_100092278
198 Ga0070678_100077869
199 Ga0070662_100018765
200 Ga0068867_100062641
201 Ga0070679_100010251
202 Ga0070684_100066508
203 Ga0070672_100077928
204 Ga0070686_100165608
205 Ga0070665_100135665
206 Ga0070665_100215262
207 Ga0068857_100166260
208 Ga0068854_100125033
209 Ga0068852_100187475
210 Ga0068852_100214196
211 Ga0068866_10057747
212 Ga0081455_10049688
213 Ga0070717_10111721
214 Ga0075365_10076372
215 Ga0075368_10013138
216 Ga0075363_100001823
217 Ga0075363_100009694
218 Ga0075364_10011713
219 Ga0075364_10069050
220 Ga0075362_10001428
221 Ga0075369_10037407
222 Ga0075366_10003843
223 Ga0075366_10024220
224 Ga0075370_10006535
225 Ga0075370_10015777
226 Ga0075428_100020942
227 Ga0075428_100337296
228 Ga0075431_100004714
229 Ga0075434_100113185
230 Ga0075429_100012760
231 Ga0079104_1000014
232 Ga0105240_10000097
233 Ga0105240_10284728
234 Ga0111539_10107698
235 Ga0111539_10223344
236 Ga0105245_10036112
237 Ga0114129_10007862
238 Ga0114129_10083977
239 Ga0105243_10085771
240 Ga0105243_10172482
241 Ga0105248_10073445
242 Ga0105237_10002422
243 Ga0105238_10063647
244 Ga0105239_10000258
245 Ga0157378_10235375
246 Ga0163162_10146957
247 Ga0157372_10040687
248 Ga0163163_10254994
249 Ga0157380_10127178
250 Ga0182007_10001724
251 Ga0182005_1007707
252 Ga0163161_10173238
253 Ga0209677_100172
254 Ga0209233_1000162
255 Ga0207682_10001593
256 Ga0207688_10035462
257 Ga0207643_10027459
258 Ga0207707_10044380
259 Ga0207695_10000187
260 Ga0207671_10019611
261 Ga0207660_10004645
262 Ga0207662_10021356
263 Ga0207657_10048971
264 Ga0207649_10172026
265 Ga0207652_10058760
266 Ga0207706_10030022
267 Ga0207669_10013509
268 Ga0207691_10071506
269 Ga0207661_10159801
270 Ga0207679_10280401
271 Ga0207703_10082190
272 Ga0207639_10123854
273 Ga0207702_10148396
274 Ga0207641_10392775
275 Ga0207648_10184529
276 Ga0207675_100108670
277 Ga0207683_10025759
278 Ga0207698_10257098
279 Ga0268266_10115972
280 Ga0268266_10244879
281 Ga0265340_10004478
282 Ga0265340_10017310
283 Ga0265316_10037849
284 Ga0265313_10005514
285 Ga0265313_10045663
286 Ga0265342_10007175
287 Ga0265342_10036859
288 Ga0373925_0114428
289 Ga0439460_0018955
290 Ga0495638_0074110
291 Ga0495605_0032571
292 Ga0495640_0093540
293 Ga0495598_0011058
294 Ga0495674_0055382
295 Ga0495672_0080458
296 Ga0495681_0023462
297 Ga0496103_0014764
298 Ga0496116_0000533
299 Ga0496117_0001441
300 Ga0496117_0015176
301 Ga0496118_0001114
302 Ga0496119_0034151
303 Ga0496119_0059550
304 Ga0496120_0007577
305 Ga0496121_0009558
306 Ga0496121_0021069
307 Ga0496122_0007577
308 Ga0496122_0046394
309 Ga0496123_0007594
310 Ga0496124_0064972
311 Ga0496125_0000143
312 Ga0496125_0004662
313 Ga0501034_0040394
314 Ga0501034_0130275
315 Ga0501036_0175607
316 Ga0501038_0060615
317 Ga0501039_0072871
318 Ga0501040_0133533
319 Ga0501043_0103954
320 Ga0501047_0080770
321 Ga0501047_0163677
322 Ga0501047_0227664
323 Ga0501048_0005985
324 Ga0501067_0092988
325 Ga0501069_0010263
326 Ga0501072_0042203
327 Ga0501073_0026497
328 Ga0501073_0034744
329 Ga0501073_0061510
330 Ga0501080_0014444
331 Ga0501080_0043966
332 Ga0501081_0128224
333 Ga0501083_0024968
334 Ga0501083_0028051
335 Ga0501083_0051399
336 Ga0501083_0072671
337 Ga0501045_0052035
338 nmdc:mga00v17_164781_c1
339 nmdc:mga00v17_8962_c1
340 nmdc:mga0k408_3288_c1
341 nmdc:mga06z11_59864_c1
342 nmdc:mga07m45_38320_c1
343 nmdc:mga05p37_190027_c1
344 nmdc:mga05p37_2728_c1
345 nmdc:mga09592_6646_c1
346 nmdc:mga0qj67_24567_c1
347 nmdc:mga06r32_9783_c1
348 nmdc:mga08y16_192481_c1
349 nmdc:mga08y16_73764_c1
350 nmdc:mga0n895_152035_c1
351 nmdc:mga0a205_11509_c1
352 nmdc:mga0a205_121886_c1
353 Ga0500610_0053875
354 Ga0500641_0004355
355 Ga0500608_034826
356 Ga0500618_019620
357 Ga0500559_0042051
358 Ga0500573_0011525
359 Ga0500616_0022839
360 Ga0500622_0003327
361 Ga0500636_0042217
362 Ga0501084_0137650
363 Ga0501082_0000010
364 Ga0501082_0157237
365 Ga0530510_0014216
366 2585277876
367 2585533261
368 2585555681
369 2616309201
370 2758637911
371 2819641892
372 2821129072
373 2857536338
374 2899805547

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01266

DAO

FAD dependent oxidoreductase

63

415

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ado-assembly1.cif.gz_A crystal structure of the rabbit l-gulonate 3-dehydrogenase 0.9658 35 65
8a3x-assembly1.cif.gz_B imine reductase from ensifer adhaerens in complex with nadp+ 0.9556 35 64
6fqz-assembly1.cif.gz_B plasmodium falciparum 6-phosphogluconate dehydrogenase in its apo form, in complex with its cofactor nadp+ and in complex with its substrate 6-phosphogluconate 0.9414 34 64
6jit-assembly1.cif.gz_A-2 complex structure of an imine reductase at 2.05 angstrom resolution 0.9401 34 64
6jit-assembly2.cif.gz_C complex structure of an imine reductase at 2.05 angstrom resolution 0.9358 34 64
ID Description Score Start End Superfamily
af_Q2FYF3_156_325_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9698 34 65 3.50.50.60
1mfzC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9696 36 64 3.40.50.720
af_Q4DU92_1_145_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9655 35 64 3.40.50.720
2vq3B00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9605 35 64 3.40.50.720
af_Q4D0X5_1_185_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9549 35 64 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A1H7X517-F1-model_v4 Glycine/D-amino acid oxidase 0.9699 39 399 GO:0005737
AF-A0A059FXB2-F1-model_v4 Putative oxidoreductase 0.9687 125 401 GO:0005737
AF-A0A4Q3RJH8-F1-model_v4 FAD-binding oxidoreductase 0.9657 8 352 GO:0005737
AF-E3PW16-F1-model_v4 Putative Oxidoreductase 0.9631 7 400 GO:0005737
AF-A0A517SJ21-F1-model_v4 Glycine oxidase (EC 1.4.3.19) 0.962 7 400 GO:0005737
GO:0043799

Map