F286872

General Info

Members Datasets Scaffolds Average Seq Length
186 154 112 765

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2965320100|2965320480
Length 797
Sequence WKSKIQIRMMTRINKRQNRLARISQMILRRFVKFVSFVAVSFLVLSCSNTRFLKEGELLYLGADVEVKSDSLSRKERKAMRKELEALTRPRPNKSILGLRPKLYIWNLAGEPKKEKGFRNWLRTKVGEEPVLFHQVDLDYNADVLQSYAQNKGYFKAVVSADSTRRGKKAKANYVITPGPRYTIKSVTFPKDTVGTSDLDSTIARTQRRTLLKVGDGFDLDVIKSERERIDSRLKQKGYFFFKPDHLKVQVDSTIGEHKVDLFVKVKSDTPEEAKKVYKINDIFIYPNFTVRKDTVGIDSTDVTYYKDFIIIDKQDLFKPRIFDRTMYFKKGDVYSRNNHNLTLSRLTNLGVFKFVKNDFKVVDDDTDDKLDAFYYLTPLPKKSIRIEVLGKTNSANYTGSELNVNWSNRNTFKGAELLQITGFGGLEVQVSGQNKGFNVYRVGGEANLVWPRFISPFKLESASGFMPRTKATIGYEYQMRQQLYSLNSFKGSFGYLWKENARKEHELKVSEITYVNPGNVTDLYRQRIDEDQTGTLEKVIRQQLIFGPIYSYTYTNTMRQRLKHQIYFKGVLDVAGTIAGIATGANVRKGDTTKVFGVPFSQYVKVEADFRHYWKFSDKTQLASRIIAGYGYAYGNSYELPFVKQFFIGGTNSIRAFRARSIGPGSYDTTVNEDEFLPDQSGDIKLELNTEIRQKLFSIVHGAAFVDAGNIWLRQKNPEKPGAEFSSKFLDELAVGTGIGLRFDLSFLILRTDLAFPLRKPYLPEGQRWVIDQIDFGSSNWRKENLVFNLAIGYPF

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2511231000 Chryseobacterium populi CF314 Isolate Rhizosphere
3 2513020052 Flavobacterium sp. CF136 Isolate Rhizosphere
4 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
5 2523533629 Kaistella palustris DSM 21579 Isolate Rhizosphere
6 2582581278 Chryseobacterium sp. CF365 Isolate Rhizosphere
7 2582581281 Chryseobacterium sp. CF284 Isolate Rhizosphere
8 2582581282 Chryseobacterium sp. CF299 Isolate Rhizosphere
9 2582581873 Chryseobacterium sp. OV259 Isolate Rhizosphere
10 2585428045 Chryseobacterium sp. OV705 Isolate Rhizosphere
11 2585428060 Chryseobacterium sp. OV715 Isolate Rhizosphere
12 2585428061 Chryseobacterium sp. CF356 Isolate Rhizosphere
13 2585428095 Chryseobacterium sp. YR005 Isolate Rhizosphere
14 2585428115 Chryseobacterium sp. YR561 Isolate Rhizosphere
15 2585428182 Chryseobacterium sp. YR477 Isolate Rhizosphere
16 2585428183 Chryseobacterium sp. YR485 Isolate Rhizosphere
17 2585428184 Chryseobacterium sp. YR480 Isolate Rhizosphere
18 2585428185 Chryseobacterium sp. YR459 Isolate Rhizosphere
19 2585428187 Chryseobacterium sp. YR460 Isolate Rhizosphere
20 2588253712 Chryseobacterium sp. OV279 Isolate Rhizosphere
21 2588254255 Chryseobacterium sp. YR221 Isolate Rhizosphere
22 2588254257 Chryseobacterium sp. YR203 Isolate Rhizosphere
23 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
24 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
25 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
26 2643221725 Flavobacterium sp. Root935 Isolate Unclassified
27 2728369107 Chryseobacterium kwangjuense KJ1R5 Isolate Unclassified
28 2738541273 Elizabethkingia sp. YR214 Isolate Unclassified
29 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
30 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
31 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
32 2738543014 Elizabethkingia sp. YR191 Isolate Unclassified
33 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
34 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
35 2739367874 Chryseobacterium sp. T16E-39 Isolate Unclassified
36 2751185877 Chryseobacterium artocarpi UTM-3 Isolate Rhizosphere
37 2765235839 Chryseobacterium indologenes AA5 Isolate Unclassified
38 2772190705 Chryseobacterium contaminans C-26 Isolate Rhizosphere
39 2775506739 Chryseobacterium sp. 1335 Isolate Unclassified
40 2802428842 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Isolate Unclassified
41 2816332188 Chryseobacterium aquifrigidense 110 (version 2) Isolate Unclassified
42 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
43 2833640130 Mariniflexile sp. TRM1-10 Isolate Rhizosphere
44 2842083920 Chryseobacterium lathyri KCTC 22544 Isolate Rhizosphere
45 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
46 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
47 2871720351 Chryseobacterium sp. KLBC 52 Isolate Nodule
48 2881359912 Flavobacterium ustbae T13 Isolate Rhizosphere
49 2889290771 Chryseobacterium sp. PvR013 Isolate Rhizosphere
50 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
51 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
52 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
53 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
54 2905999023 Chryseobacterium elymi KCTC 22547 Isolate Rhizosphere
55 2919097161 Chryseobacterium ginsenosidimutans 1394 Isolate Rhizosphere
56 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
57 2919399522 Chryseobacterium sp. 2987 Isolate Unclassified
58 2919509842 Flavobacterium arsenatis 3773 Isolate Unclassified
59 2919683626 Flavobacterium piscis 4129 Isolate Unclassified
60 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
61 2945924605 Chryseobacterium ginsenosidimutans W1I9 Isolate Rhizosphere
62 2946019816 Chryseobacterium sp. W4I1 Isolate Rhizosphere
63 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
64 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
65 2965320100 Flavobacterium agri MAH-1 Isolate Rhizosphere
66 2977243572 Chryseobacterium sp. SORGH_AS 447 Isolate Unclassified
67 2977268062 Flavobacterium sp. SORGH_AS 622 Isolate Unclassified
68 2984572630 Chryseobacterium sp. SORGH_AS909 Isolate Aerial Root
69 2993372514 Chryseobacterium sp. SLBN-27 Isolate Rhizosphere
70 2993480792 Chryseobacterium nepalense SLBN-92 Isolate Rhizosphere
71 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
72 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
73 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
74 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
75 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
76 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
77 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
78 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
79 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
80 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
81 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
82 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
83 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
84 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
85 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
86 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
87 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
88 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
89 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
90 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
91 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
92 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
93 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
94 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
95 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
96 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
102 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
103 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
104 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
105 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
106 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
107 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
108 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
109 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
110 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
111 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
112 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
113 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
114 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
115 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
116 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
117 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
118 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
119 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
120 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
121 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
122 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
123 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
124 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
125 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
126 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
127 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
128 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
129 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
130 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
131 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
132 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
133 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
134 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
135 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
136 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
137 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
138 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
139 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
140 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
141 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
142 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
143 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
144 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
145 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
146 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
147 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
148 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
149 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
150 8036736890 Flavobacterium dauae TCH3-2 Isolate Rhizosphere
151 8054307821 Flavobacterium soyae SCIV07 Isolate Rhizosphere
152 8055419101 Flavobacterium tyrosinilyticum KCTC 42726 Isolate Rhizosphere
153 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere
154 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 60.22
Metatranscriptomes 0
Isolates 39.78

Biome Distribution

Category Percentage (%)
Aerial Root 0.54
Bulb 0
Endosphere 2.69
Nodule 3.23
Rhizoplane 0.54
Rhizosphere 66.67
Stem 0
Stem Tuber 0
Unclassified 26.34

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_955621 2162886007 Bacteria 4775
2 rootH1_10028204 3300003323 Bacteria 19001
3 Ga0065714_10064631 3300005288 Bacteria 27241
4 Ga0065704_10072361 3300005289 Bacteria 8669
5 Ga0065704_10073278 3300005289 Bacteria 7351
6 Ga0065704_10073649 3300005289 Bacteria 6922
7 Ga0070682_100000602 3300005337 Bacteria 21893
8 Ga0070669_100008591 3300005353 Bacteria 7290
9 Ga0070684_100027976 3300005535 Bacteria 4765
10 Ga0068859_100024819 3300005617 Bacteria 6016
11 Ga0068862_100025453 3300005844 Bacteria 4969
12 Ga0097620_100024816 3300006931 Bacteria 6016
13 Ga0099824_1005385 3300006942 Bacteria 18044
14 Ga0079104_1000154 3300006946 Bacteria 97194
15 Ga0099826_10001442 3300006948 Bacteria 14259
16 Ga0105244_10000001 3300009036 Bacteria 1034899
17 Ga0105244_10000083 3300009036 Bacteria 105563
18 Ga0111539_10007234 3300009094 Bacteria 14223
19 Ga0105243_10000157 3300009148 Bacteria 78420
20 Ga0157373_10000054 3300013100 Bacteria 103861
21 Ga0157373_10000080 3300013100 Bacteria 82365
22 Ga0157371_10000310 3300013102 Bacteria 63504
23 Ga0157370_10001649 3300013104 Bacteria 27558
24 Ga0157370_10001676 3300013104 Bacteria 27288
25 Ga0157370_10006633 3300013104 Bacteria 12717
26 Ga0157370_10007350 3300013104 Bacteria 12019
27 Ga0157370_10008655 3300013104 Bacteria 10951
28 Ga0157370_10011067 3300013104 Bacteria 9458
29 Ga0157369_10003486 3300013105 Bacteria 18674
30 Ga0157369_10008249 3300013105 Bacteria 11941
31 Ga0157375_10000239 3300013308 Bacteria 50493
32 Ga0157380_10002907 3300014326 Bacteria 11649
33 Ga0182008_10000242 3300014497 Bacteria 42341
34 Ga0182006_1000003 3300015261 Bacteria 826681
35 Ga0182006_1006501 3300015261 Bacteria 5423
36 Ga0163161_10000009 3300017792 Bacteria 287918
37 Ga0163161_10001524 3300017792 Bacteria 17152
38 Ga0209675_1000180 3300025291 Bacteria 71583
39 Ga0207655_1000018 3300025728 Bacteria 537129
40 Ga0207655_1000093 3300025728 Bacteria 196813
41 Ga0207706_10025130 3300025933 Bacteria 5340
42 Ga0207709_10000286 3300025935 Bacteria 57616
43 Ga0207670_10036937 3300025936 Bacteria 3181
44 Ga0207675_100001399 3300026118 Bacteria 24123
45 Ga0209281_1000158 3300027111 Bacteria 162280
46 Ga0209489_110832 3300027361 Bacteria 9873
47 Ga0265336_10012082 3300028666 Bacteria 2912
48 Ga0307408_100001225 3300031548 Bacteria 19318
49 Ga0307405_10000001 3300031731 Bacteria 1731270
50 Ga0307413_10000071 3300031824 Bacteria 25099
51 Ga0307410_10000086 3300031852 Bacteria 31282
52 Ga0307406_10000116 3300031901 Bacteria 46537
53 Ga0307407_10000957 3300031903 Bacteria 9826
54 Ga0307412_10000062 3300031911 Bacteria 126099
55 Ga0307412_10000147 3300031911 Bacteria 50625
56 Ga0307412_10001334 3300031911 Bacteria 13770
57 Ga0307416_100000013 3300032002 Bacteria 283585
58 Ga0307414_10000005 3300032004 Bacteria 452161
59 Ga0307414_10000041 3300032004 Bacteria 144783
60 Ga0307414_10002817 3300032004 Bacteria 9165
61 Ga0307411_10000010 3300032005 Bacteria 238134
62 Ga0439447_001289 3300041407 Bacteria 9120
63 Ga0439466_0002301 3300041411 Bacteria 7493
64 Ga0439465_0000234 3300041413 Bacteria 15110
65 Ga0439445_0000233 3300042004 Bacteria 10374
66 Ga0495627_000067 3300046453 Bacteria 130165
67 Ga0495627_002653 3300046453 Bacteria 8402
68 Ga0495596_0001021 3300046500 Bacteria 16626
69 Ga0495607_0028438 3300046501 Bacteria 3450
70 Ga0495610_0000006 3300046512 Bacteria 856822
71 Ga0495632_0018034 3300046519 Bacteria 3881
72 Ga0495663_0000026 3300046525 Bacteria 90652
73 Ga0495654_0000017 3300046530 Bacteria 295999
74 Ga0495609_0000017 3300046538 Bacteria 306684
75 Ga0495633_0000037 3300046558 Bacteria 184006
76 Ga0495633_0003482 3300046558 Bacteria 10466
77 Ga0495625_0001806 3300046660 Bacteria 24575
78 Ga0495686_0000127 3300047472 Bacteria 156278
79 Ga0496102_0010427 3300048905 Bacteria 7992
80 Ga0496116_0000052 3300048919 Bacteria 295469
81 Ga0496116_0000156 3300048919 Bacteria 140734
82 Ga0496117_0000082 3300048920 Bacteria 220895
83 Ga0496118_0000617 3300048921 Bacteria 58633
84 Ga0496119_0000006 3300048922 Bacteria 505999
85 Ga0496121_0016136 3300048924 Bacteria 7739
86 Ga0496122_0000155 3300048925 Bacteria 160489
87 Ga0496122_0000168 3300048925 Bacteria 155447
88 Ga0496122_0000493 3300048925 Bacteria 82000
89 Ga0496122_0003477 3300048925 Bacteria 20726
90 Ga0496122_0022227 3300048925 Bacteria 5645
91 Ga0496123_0000588 3300048926 Bacteria 62012
92 Ga0496123_0023365 3300048926 Bacteria 4733
93 Ga0496124_0000911 3300048927 Bacteria 47713
94 Ga0496124_0038184 3300048927 Bacteria 4170
95 Ga0496125_0000062 3300048928 Bacteria 259277
96 Ga0496125_0001123 3300048928 Bacteria 40895
97 Ga0496125_0001180 3300048928 Bacteria 39548
98 Ga0496125_0002608 3300048928 Bacteria 23127
99 Ga0496125_0016788 3300048928 Bacteria 7017
100 Ga0496126_0003698 3300048929 Bacteria 19102
101 Ga0496126_0020319 3300048929 Bacteria 6516
102 Ga0501238_000267 3300049671 Bacteria 6935
103 Ga0501249_000055 3300049679 Bacteria 42892
104 Ga0501241_000017 3300049758 Bacteria 96324
105 Ga0501266_000009 3300049763 Bacteria 233584
106 Ga0501269_000095 3300049766 Bacteria 27616
107 Ga0501280_000618 3300049776 Bacteria 8121
108 nmdc:mga08y16_24328_c1 3300050511 Bacteria 6392
109 Ga0500641_0000029 3300053096 Bacteria 103994
110 Ga0500641_0000881 3300053096 Bacteria 10748
111 Ga0500658_0000006 3300053134 Bacteria 290380
112 Ga0500616_0005111 3300053153 Bacteria 9043

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048919 Ga0496116_0000052 Ga0496116_0000052_225452_227692 722
2 3300048927 Ga0496124_0000911 Ga0496124_0000911_2506_4746 722
3 3300013104 Ga0157370_10006633 Ga0157370_100066335 723
4 3300046453 Ga0495627_000067 Ga0495627_000067_21204_23429 723
5 3300053134 Ga0500658_0000006 Ga0500658_0000006_106469_108802 723
6 3300009036 Ga0105244_10000083 Ga0105244_1000008345 729
7 3300017792 Ga0163161_10001524 Ga0163161_100015242 729
8 3300025728 Ga0207655_1000093 Ga0207655_1000093102 729
9 3300017792 Ga0163161_10000009 Ga0163161_10000009101 730
10 3300031911 Ga0307412_10000147 Ga0307412_1000014720 730
11 3300046500 Ga0495596_0001021 Ga0495596_0001021_8463_10688 730
12 3300046519 Ga0495632_0018034 Ga0495632_0018034_700_2925 730
13 3300046558 Ga0495633_0003482 Ga0495633_0003482_182_2407 730
14 3300032004 Ga0307414_10002817 Ga0307414_100028175 731
15 3300053096 Ga0500641_0000881 Ga0500641_0000881_363_2696 731
16 3300009036 Ga0105244_10000001 Ga0105244_10000001636 735
17 3300028666 Ga0265336_10012082 Ga0265336_100120821 735
18 3300048929 Ga0496126_0003698 Ga0496126_0003698_8440_10719 735
19 3300013104 Ga0157370_10011067 Ga0157370_100110674 736
20 3300048905 Ga0496102_0010427 Ga0496102_0010427_660_2939 736
21 3300048920 Ga0496117_0000082 Ga0496117_0000082_136639_138918 736
22 3300048921 Ga0496118_0000617 Ga0496118_0000617_38619_40898 736
23 3300048922 Ga0496119_0000006 Ga0496119_0000006_37333_39612 736
24 3300048925 Ga0496122_0000493 Ga0496122_0000493_42361_44640 736
25 3300048925 Ga0496122_0022227 Ga0496122_0022227_2585_4864 736
26 3300048926 Ga0496123_0000588 Ga0496123_0000588_23626_25905 736
27 3300048928 Ga0496125_0001123 Ga0496125_0001123_32649_34928 736
28 3300048928 Ga0496125_0001180 Ga0496125_0001180_5012_7291 736
29 3300005353 Ga0070669_100008591 Ga0070669_1000085912 737
30 3300005617 Ga0068859_100024819 Ga0068859_1000248193 737
31 3300005844 Ga0068862_100025453 Ga0068862_1000254532 737
32 3300006931 Ga0097620_100024816 Ga0097620_1000248163 737
33 3300009094 Ga0111539_10007234 Ga0111539_1000723410 737
34 3300014326 Ga0157380_10002907 Ga0157380_100029072 737
35 3300025933 Ga0207706_10025130 Ga0207706_100251306 737
36 3300025936 Ga0207670_10036937 Ga0207670_100369372 737
37 3300026118 Ga0207675_100001399 Ga0207675_10000139912 737
38 3300049679 Ga0501249_000055 Ga0501249_000055_8390_10726 737
39 3300050511 nmdc:mga08y16_24328_c1 nmdc:mga08y16_24328_c1_3455_5749 737
40 3300013104 Ga0157370_10001649 Ga0157370_1000164924 738
41 3300046660 Ga0495625_0001806 Ga0495625_0001806_11794_14043 738
42 3300031824 Ga0307413_10000071 Ga0307413_100000715 742
43 3300032005 Ga0307411_10000010 Ga0307411_1000001090 742
44 3300048929 Ga0496126_0020319 Ga0496126_0020319_192_2519 742
45 3300049763 Ga0501266_000009 Ga0501266_000009_101953_104286 742
46 iso_pu_bacteria 2902048731 2902052490 742
47 iso_pu_bacteria 2919509842 2919511630 742
48 3300032004 Ga0307414_10000005 Ga0307414_1000000581 743
49 3300005289 Ga0065704_10073649 Ga0065704_100736492 744
50 3300013100 Ga0157373_10000054 Ga0157373_1000005450 744
51 3300013104 Ga0157370_10001676 Ga0157370_100016768 744
52 3300015261 Ga0182006_1006501 Ga0182006_10065012 744
53 3300031731 Ga0307405_10000001 Ga0307405_100000011558 744
54 3300053096 Ga0500641_0000029 Ga0500641_0000029_50734_53052 744
55 3300013104 Ga0157370_10008655 Ga0157370_100086554 745
56 iso_pu_bacteria 2833640130 2833640363 746
57 iso_pu_bacteria 2946019816 2946022904 747
58 3300047472 Ga0495686_0000127 Ga0495686_0000127_76761_79040 748
59 iso_pu_bacteria 2513020052 2513236003 748
60 iso_pu_bacteria 2919683626 2919685097 748
61 3300041407 Ga0439447_001289 Ga0439447_001289_3674_6007 749
62 iso_pu_bacteria 2958512119 2958512284 749
63 3300046453 Ga0495627_002653 Ga0495627_002653_1745_4093 751
64 3300025291 Ga0209675_1000180 Ga0209675_100018031 752
65 3300048925 Ga0496122_0000155 Ga0496122_0000155_35261_37588 752
66 3300048925 Ga0496122_0003477 Ga0496122_0003477_8680_10971 752
67 3300006942 Ga0099824_1005385 Ga0099824_100538514 753
68 3300006948 Ga0099826_10001442 Ga0099826_1000144210 753
69 3300027361 Ga0209489_110832 Ga0209489_1108322 753
70 3300046501 Ga0495607_0028438 Ga0495607_0028438_136_2442 753
71 iso_pu_bacteria 2519899754 2520881153 753
72 iso_pu_bacteria 2816332280 2817414984 753
73 iso_pu_bacteria 2903895155 2903896091 753
74 iso_pu_bacteria 8055419101 8055419197 753
75 3300006946 Ga0079104_1000154 Ga0079104_10001546 754
76 3300013105 Ga0157369_10008249 Ga0157369_100082496 754
77 3300027111 Ga0209281_1000158 Ga0209281_100015874 754
78 3300031548 Ga0307408_100001225 Ga0307408_1000012254 754
79 3300031852 Ga0307410_10000086 Ga0307410_1000008629 754
80 3300031901 Ga0307406_10000116 Ga0307406_1000011628 754
81 3300031903 Ga0307407_10000957 Ga0307407_100009576 754
82 3300041411 Ga0439466_0002301 Ga0439466_0002301_3814_6144 754
83 3300048919 Ga0496116_0000156 Ga0496116_0000156_108412_110730 754
84 3300048927 Ga0496124_0038184 Ga0496124_0038184_849_3167 754
85 3300048928 Ga0496125_0000062 Ga0496125_0000062_107391_109709 754
86 3300048928 Ga0496125_0002608 Ga0496125_0002608_19538_21844 754
87 3300049671 Ga0501238_000267 Ga0501238_000267_3142_5472 754
88 3300049776 Ga0501280_000618 Ga0501280_000618_3015_5345 754
89 3300053153 Ga0500616_0005111 Ga0500616_0005111_5412_7721 754
90 iso_pu_bacteria 2857613821 2857617559 754
91 iso_pu_bacteria 2857618242 2857621217 754
92 iso_pu_bacteria 2904419702 2904421863 754
93 iso_pu_bacteria 2958458903 2958460144 754
94 iso_pu_bacteria 8055592153 8055592482 754
95 3300048924 Ga0496121_0016136 Ga0496121_0016136_140_2458 755
96 iso_pu_bacteria 2643221600 2644010982 755
97 iso_pu_bacteria 2643221667 2644373834 755
98 iso_pu_bacteria 2643221716 2644643478 755
99 iso_pu_bacteria 2643221725 2644683987 755
100 iso_pu_bacteria 2738541279 2738736267 755
101 iso_pu_bacteria 2738541285 2738768710 755
102 iso_pu_bacteria 2738543007 2739217849 755
103 iso_pu_bacteria 2802428842 2802652122 755
104 iso_pu_bacteria 2881359912 2881360003 755
105 iso_pu_bacteria 2904555929 2904559822 755
106 iso_pu_bacteria 2919191525 2919195700 755
107 iso_pu_bacteria 2929150217 2929152152 755
108 iso_pu_bacteria 2977268062 2977268850 755
109 iso_pu_bacteria 8054307821 8054309623 755
110 iso_pu_bacteria 8056440228 8056442564 755
111 iso_pu_bacteria 2739367857 2739999476 756
112 iso_pu_bacteria 2739367858 2740004293 756
113 iso_pu_bacteria 2965320100 2965320480 756
114 3300041413 Ga0439465_0000234 Ga0439465_0000234_2986_5313 757
115 3300049758 Ga0501241_000017 Ga0501241_000017_84214_86541 757
116 3300049766 Ga0501269_000095 Ga0501269_000095_20768_23095 757
117 3300046530 Ga0495654_0000017 Ga0495654_0000017_183933_186260 758
118 3300046558 Ga0495633_0000037 Ga0495633_0000037_167198_169525 758
119 iso_pu_bacteria 2511231000 2511232943 759
120 iso_pu_bacteria 2582581281 2585157581 759
121 iso_pu_bacteria 2582581282 2585161979 759
122 iso_pu_bacteria 2842083920 2842085226 759
123 iso_pu_bacteria 2905999023 2906001583 759
124 iso_pu_bacteria 2993372514 2993376162 759
125 iso_pu_bacteria 2993480792 2993482976 759
126 iso_pu_bacteria 2582581278 2585144416 760
127 iso_pu_bacteria 2582581873 2585425817 760
128 iso_pu_bacteria 2585428045 2587680814 760
129 iso_pu_bacteria 2585428060 2587747275 760
130 iso_pu_bacteria 2585428115 2587945101 760
131 iso_pu_bacteria 2585428182 2588210519 760
132 iso_pu_bacteria 2585428183 2588214238 760
133 iso_pu_bacteria 2585428184 2588217121 760
134 iso_pu_bacteria 2585428185 2588223323 760
135 iso_pu_bacteria 2585428187 2588232718 760
136 iso_pu_bacteria 2588253712 2588443789 760
137 iso_pu_bacteria 2588254255 2590601785 760
138 iso_pu_bacteria 2588254257 2590613501 760
139 iso_pu_bacteria 2728369107 2729200294 760
140 iso_pu_bacteria 2739367874 2740059282 760
141 iso_pu_bacteria 2751185877 2753673359 760
142 iso_pu_bacteria 2765235839 2765574455 760
143 iso_pu_bacteria 2772190705 2772606076 760
144 iso_pu_bacteria 2775506739 2775671749 760
145 iso_pu_bacteria 2816332188 2816874675 760
146 iso_pu_bacteria 2871720351 2871722205 760
147 iso_pu_bacteria 2889290771 2889294989 760
148 iso_pu_bacteria 2919097161 2919098811 760
149 iso_pu_bacteria 2919399522 2919402290 760
150 iso_pu_bacteria 2945924605 2945925824 760
151 iso_pu_bacteria 2977243572 2977244739 760
152 iso_pu_bacteria 2984572630 2984573358 760
153 iso_pu_bacteria 2738541273 2738701145 761
154 iso_pu_bacteria 2738543014 2739255039 761
155 3300013308 Ga0157375_10000239 Ga0157375_1000023924 762
156 3300042004 Ga0439445_0000233 Ga0439445_0000233_4951_7275 762
157 3300048928 Ga0496125_0016788 Ga0496125_0016788_4003_6327 762
158 3300005289 Ga0065704_10072361 Ga0065704_100723615 763
159 3300015261 Ga0182006_1000003 Ga0182006_1000003544 763
160 3300031911 Ga0307412_10001334 Ga0307412_100013346 763
161 3300046512 Ga0495610_0000006 Ga0495610_0000006_254170_256494 763
162 3300003323 rootH1_10028204 rootH1_100282048 764
163 3300005337 Ga0070682_100000602 Ga0070682_1000006026 764
164 3300005535 Ga0070684_100027976 Ga0070684_1000279762 764
165 3300009148 Ga0105243_10000157 Ga0105243_1000015720 764
166 3300025728 Ga0207655_1000018 Ga0207655_1000018165 764
167 3300025935 Ga0207709_10000286 Ga0207709_1000028641 764
168 3300031911 Ga0307412_10000062 Ga0307412_1000006279 764
169 3300032002 Ga0307416_100000013 Ga0307416_100000013122 764
170 3300046538 Ga0495609_0000017 Ga0495609_0000017_222892_225240 764
171 3300048925 Ga0496122_0000168 Ga0496122_0000168_114916_117243 764
172 3300048926 Ga0496123_0023365 Ga0496123_0023365_121_2448 764
173 iso_pu_bacteria 8036736890 8036738228 764
174 iso_pu_bacteria 2523533629 2524006160 766
175 iso_pu_bacteria 2585428061 2587753872 766
176 iso_pu_bacteria 2585428095 2587867235 766
177 3300005288 Ga0065714_10064631 Ga0065714_100646317 770
178 3300013100 Ga0157373_10000080 Ga0157373_100000806 770
179 3300014497 Ga0182008_10000242 Ga0182008_1000024225 770
180 3300032004 Ga0307414_10000041 Ga0307414_10000041127 770
181 3300046525 Ga0495663_0000026 Ga0495663_0000026_78468_80819 770
182 3300013104 Ga0157370_10007350 Ga0157370_100073503 772
183 3300013105 Ga0157369_10003486 Ga0157369_100034868 772
184 3300013102 Ga0157371_10000310 Ga0157371_1000031043 777
185 2162886007 SwRhRL2b_contig_955621 SwRhRL2b_0625.00006500 778
186 3300005289 Ga0065704_10073278 Ga0065704_100732782 778

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01103

Omp85

Omp85 superfamily domain

583

796

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
3q6b-assembly1.cif.gz_A the high-resolution and new form crystal structure of bama potra4-5 from e.coli 0.7647 159 359
3q6b-assembly1.cif.gz_A the high-resolution and new form crystal structure of bama potra4-5 from e.coli 0.7565 159 359
4n74-assembly1.cif.gz_A crystal structure of outer membrane protein tama beta-barrel domain in e.coli 0.7233 362 776
6izs-assembly1.cif.gz_A crystal structure of haemophilus influenzae bama potra4 0.7138 158 252
4n74-assembly1.cif.gz_A crystal structure of outer membrane protein tama beta-barrel domain in e.coli 0.713 362 776
ID Description Score Start End Superfamily
4k3bA05 Alpha Beta;Roll;Ubiquitin-like (UB roll);membrane protein fhac 0.8811 253 362 3.10.20.310
4k3bA05 Alpha Beta;Roll;Ubiquitin-like (UB roll);membrane protein fhac 0.8409 253 362 3.10.20.310
2x8xX01 Alpha Beta;Roll;Ubiquitin-like (UB roll);membrane protein fhac 0.8385 254 361 3.10.20.310
5aywA05 Alpha Beta;Roll;Ubiquitin-like (UB roll);membrane protein fhac 0.8204 254 362 3.10.20.310
4xgaB02 Alpha Beta;Roll;Ubiquitin-like (UB roll);membrane protein fhac 0.8134 159 252 3.10.20.310
ID Description Score Start End GO Terms
AF-A0A519LEZ4-F1-model_v4 Bacterial surface antigen (D15) domain-containing protein 0.9505 1 595
AF-A0A519LEZ4-F1-model_v4 Bacterial surface antigen (D15) domain-containing protein 0.9413 1 595
AF-A0A2W6TJU8-F1-model_v4 Bacterial surface antigen (D15) domain-containing protein 0.9386 1 681 GO:0019867
AF-A0A519LJS7-F1-model_v4 Bacterial surface antigen (D15) domain-containing protein 0.9322 468 778 GO:0009279
AF-A0A2W6TJU8-F1-model_v4 Bacterial surface antigen (D15) domain-containing protein 0.9306 1 681 GO:0019867

Feature Viewer

pLDDT pTM Quality
81.84 0.67 Medium
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Predicted Structure (AlphaFold2)

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