F286836

General Info

Members Datasets Scaffolds Average Seq Length
186 128 145 355

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2585428094|2587864436
Length 391
Sequence IRDPKLERMPAFDAPLPSAASDSEPTAAAPLGERLNLQASSVHITREICDIESVSGDEKRLADAIEATLSHSAHLEVIRHGNCVVARTNLGRAQRVIIAGHIDTVPIKGNVPTRFETIDGHDYLWGRGTVDMKAGVAVQLKLAAELSAPLFDVTWMWYDNEEVSSALNGLGLLAADRPDLFVGDFAILGEPSNGQVEGGCNGTIRFELRTRGIRAHSARPWVGDNAIHKMGVVLERLSAYVPREVEVEGLVYREALNAIGISGGVAGNVIPDEAMAHINYRFAPSRSAAEAIAHMHELFPEFEILVVDEAEGARPGLDAPIARNFVAAVGAEPRPKYGWTDVARFSAMGIPAINFGPGNPLKAHADDERVLLSQIIDGERALRSWLSGHEW

Samples

Sample ID Description Type Environment
1 2585428094 Herbiconiux sp. YR403 Isolate Rhizosphere
2 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
3 2643221553 Microbacterium sp. Root553 Isolate Unclassified
4 2643221566 Microbacterium sp. Root166 Isolate Unclassified
5 2643221575 Microbacterium sp. Root61 Isolate Unclassified
6 2643221630 Microbacterium sp. Root322 Isolate Unclassified
7 2643221649 Leifsonia sp. Root4 Isolate Unclassified
8 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
9 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
10 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
11 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
12 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
13 2808606372 Agromyces sp. 23-23 Isolate Unclassified
14 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
15 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
16 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
17 2844852863 Herbiconiux flava DSM 26474 Isolate Rhizosphere
18 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
19 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
20 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
21 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
22 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
23 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
24 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
25 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
26 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
27 2919069694 Microbacterium sp. 1154 Isolate Unclassified
28 2919395869 Microbacterium resistens 2980 Isolate Unclassified
29 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
30 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
31 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
32 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
33 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
34 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
35 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
36 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
37 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
38 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
39 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
40 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
41 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
42 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
43 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
44 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
45 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
46 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
47 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
48 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
49 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
50 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
51 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
52 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
53 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
54 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
55 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
56 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
60 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
61 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
62 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
63 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
64 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
65 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
66 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
67 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
68 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
69 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
70 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
71 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
72 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
73 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
74 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
75 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
76 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
77 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
78 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
79 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
80 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
81 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
82 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
83 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
84 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
85 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
86 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
87 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
88 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
89 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
90 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
91 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
92 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
93 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
94 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
95 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
96 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
97 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
98 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
99 3300049130 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
100 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
107 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
108 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
112 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
113 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
114 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
115 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
116 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
118 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
119 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
120 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
121 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
122 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
123 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
124 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
125 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
126 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
127 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
128 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 76.34
Metatranscriptomes 1.61
Isolates 22.04

Biome Distribution

Category Percentage (%)
Aerial Root 1.08
Bulb 0
Endosphere 11.29
Nodule 0
Rhizoplane 15.05
Rhizosphere 43.01
Stem 0
Stem Tuber 0
Unclassified 29.57

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25154J39366_1002161 3300002738 Bacteria 5496
2 Ga0006562J51391_1113720 3300003578 Bacteria 6190
3 Ga0006562J51391_1113722 3300003578 Bacteria 3550
4 Ga0075365_10006122 3300006038 Bacteria 6581
5 Ga0075363_100030466 3300006048 Bacteria 2794
6 Ga0075364_10081221 3300006051 Bacteria 2143
7 Ga0075364_10082361 3300006051 Bacteria 2129
8 Ga0075367_10000554 3300006178 Bacteria 14201
9 Ga0075369_10014624 3300006186 Bacteria 3139
10 Ga0075370_10023169 3300006353 Bacteria 3418
11 Ga0105237_10071552 3300009545 Bacteria 3463
12 Ga0157370_10174334 3300013104 Bacteria 1999
13 Ga0157369_10072548 3300013105 Bacteria 3695
14 Ga0171462_1003 3300013250 Bacteria 853796
15 Ga0163162_10055717 3300013306 Bacteria 3982
16 Ga0163162_10214818 3300013306 Bacteria 2053
17 Ga0157372_10063514 3300013307 Bacteria 4140
18 Ga0157375_10054954 3300013308 Bacteria 3924
19 Ga0209646_1000092 3300025246 Bacteria 185930
20 Ga0207709_10037945 3300025935 Bacteria 2865
21 Ga0207683_10059023 3300026121 Bacteria 3369
22 Ga0209974_10005822 3300027876 Bacteria 4322
23 Ga0307515_10106861 3300028794 Bacteria 3315
24 Ga0307406_10000018 3300031901 Bacteria 101770
25 Ga0307406_10000608 3300031901 Bacteria 20477
26 Ga0307406_10290136 3300031901 Bacteria 1252
27 Ga0307414_10162941 3300032004 Bacteria 1774
28 Ga0307414_10249763 3300032004 Bacteria 1474
29 Ga0451789_0233241 3300041443 Bacteria 2420
30 Ga0451791_1666820 3300041451 Bacteria 7239
31 Ga0451793_0152285 3300041452 Bacteria 10161
32 Ga0451839_0521350 3300041496 Bacteria 1937
33 Ga0451853_2562000 3300041512 Bacteria 2383
34 Ga0466965_0028992 3300044683 Bacteria 2691
35 Ga0495627_000852 3300046453 Bacteria 21820
36 Ga0495629_0212832 3300046459 Bacteria 1335
37 Ga0495650_0000835 3300046471 Bacteria 37135
38 Ga0495608_0134189 3300046511 Bacteria 1583
39 Ga0495645_0040903 3300046543 Bacteria 3380
40 Ga0495657_0273812 3300046675 Bacteria 1012
41 Ga0495647_0050657 3300046681 Bacteria 1612
42 Ga0495672_0023940 3300047320 Bacteria 3943
43 Ga0495593_0144120 3300047673 Bacteria 1206
44 Ga0496100_0123671 3300048903 Bacteria 1813
45 Ga0496102_0040027 3300048905 Bacteria 4238
46 Ga0496102_0040229 3300048905 Bacteria 4228
47 Ga0496102_0098226 3300048905 Bacteria 2717
48 Ga0496103_0050244 3300048906 Bacteria 2579
49 Ga0496103_0343654 3300048906 Bacteria 960
50 Ga0496104_0006958 3300048907 Bacteria 9974
51 Ga0496105_0000965 3300048908 Bacteria 19757
52 Ga0496106_0352695 3300048909 Bacteria 1182
53 Ga0496108_0000928 3300048911 Bacteria 22854
54 Ga0496108_0025341 3300048911 Bacteria 4886
55 Ga0496108_0082420 3300048911 Bacteria 2728
56 Ga0496108_0116604 3300048911 Bacteria 2288
57 Ga0496109_0014832 3300048912 Bacteria 6780
58 Ga0496109_0146941 3300048912 Bacteria 2206
59 Ga0496110_0002066 3300048913 Bacteria 14967
60 Ga0496110_0023950 3300048913 Bacteria 5199
61 Ga0496111_0000386 3300048914 Bacteria 22027
62 Ga0496112_0149804 3300048915 Bacteria 2300
63 Ga0496113_0001375 3300048916 Bacteria 13486
64 Ga0496114_0000657 3300048917 Bacteria 25588
65 Ga0496114_0022798 3300048917 Bacteria 5103
66 Ga0496114_0084556 3300048917 Bacteria 2687
67 Ga0496114_0312795 3300048917 Bacteria 1387
68 Ga0496115_0055037 3300048918 Bacteria 3195
69 Ga0496117_0001216 3300048920 Bacteria 38595
70 Ga0496117_0004509 3300048920 Bacteria 15306
71 Ga0496119_0000945 3300048922 Bacteria 37393
72 Ga0496119_0001131 3300048922 Bacteria 33628
73 Ga0496119_0008431 3300048922 Bacteria 9053
74 Ga0496120_0034900 3300048923 Bacteria 3009
75 Ga0496120_0106952 3300048923 Bacteria 1468
76 Ga0496122_0000036 3300048925 Bacteria 312598
77 Ga0496122_0010504 3300048925 Bacteria 9525
78 Ga0496122_0027383 3300048925 Bacteria 4876
79 Ga0496122_0057123 3300048925 Bacteria 2902
80 Ga0496123_0000011 3300048926 Bacteria 493925
81 Ga0496123_0070109 3300048926 Bacteria 2196
82 Ga0496123_0084734 3300048926 Bacteria 1910
83 Ga0496124_0017657 3300048927 Bacteria 6718
84 Ga0496124_0221077 3300048927 Bacteria 1424
85 Ga0496125_0003908 3300048928 Bacteria 17584
86 Ga0496125_0012531 3300048928 Bacteria 8409
87 Ga0496125_0110632 3300048928 Bacteria 1991
88 Ga0496126_0023976 3300048929 Bacteria 5899
89 Ga0496126_0078998 3300048929 Bacteria 2914
90 Ga0501310_000013 3300049130 Bacteria 17841
91 Ga0501032_0063879 3300049569 Bacteria 2464
92 Ga0501033_0006170 3300049570 Bacteria 9398
93 Ga0501033_0031543 3300049570 Bacteria 3981
94 Ga0501034_0000809 3300049571 Bacteria 46532
95 Ga0501034_0069623 3300049571 Bacteria 3529
96 Ga0501034_0127517 3300049571 Bacteria 2529
97 Ga0501034_0145636 3300049571 Bacteria 2346
98 Ga0501034_0168914 3300049571 Bacteria 2155
99 Ga0501036_0049980 3300049572 Bacteria 3541
100 Ga0501036_0125953 3300049572 Bacteria 2163
101 Ga0501036_0226360 3300049572 Bacteria 1570
102 Ga0501037_0039097 3300049573 Bacteria 3493
103 Ga0501038_0011429 3300049574 Bacteria 8101
104 Ga0501038_0027865 3300049574 Bacteria 5020
105 Ga0501039_0117711 3300049575 Bacteria 2081
106 Ga0501039_0222320 3300049575 Bacteria 1484
107 Ga0501042_0084020 3300049578 Bacteria 2282
108 Ga0501043_0011362 3300049579 Bacteria 6970
109 Ga0501043_0059093 3300049579 Bacteria 3008
110 Ga0501043_0116147 3300049579 Bacteria 2100
111 Ga0501046_0012571 3300049580 Bacteria 7199
112 Ga0501046_0071321 3300049580 Bacteria 2699
113 Ga0501047_0027298 3300049581 Bacteria 5499
114 Ga0501047_0065352 3300049581 Bacteria 3506
115 Ga0501047_0076176 3300049581 Bacteria 3228
116 Ga0501047_0081487 3300049581 Bacteria 3110
117 Ga0501067_0032898 3300049583 Bacteria 2878
118 Ga0501070_0024110 3300049586 Bacteria 5102
119 Ga0501070_0082098 3300049586 Bacteria 2667
120 Ga0501070_0106769 3300049586 Bacteria 2314
121 Ga0501073_0000015 3300049589 Bacteria 157300
122 Ga0501073_0017850 3300049589 Bacteria 5136
123 Ga0501074_0071729 3300049590 Bacteria 2489
124 Ga0501080_0108690 3300049742 Bacteria 2570
125 Ga0501035_0096817 3300049822 Bacteria 2592
126 Ga0501035_0099973 3300049822 Bacteria 2546
127 Ga0501044_0021416 3300049823 Bacteria 6896
128 Ga0501044_0061121 3300049823 Bacteria 3854
129 Ga0501044_0072468 3300049823 Bacteria 3501
130 Ga0501044_0103190 3300049823 Bacteria 2866
131 nmdc:mga03n38_10342_c1 3300050490 Bacteria 3427
132 nmdc:mga00v17_237852_c1 3300050491 Bacteria 1180
133 nmdc:mga00v17_25287_c1 3300050491 Bacteria 3450
134 nmdc:mga00v17_50281_c1 3300050491 Bacteria 2532
135 nmdc:mga00v17_53460_c2 3300050491 Bacteria 2110
136 nmdc:mga00v17_84087_c1 3300050491 Bacteria 1991
137 nmdc:mga0yw44_1333_c1 3300050492 Bacteria 9765
138 nmdc:mga0yw44_4864_c1 3300050492 Bacteria 6245
139 Ga0500641_0002437 3300053096 Bacteria 6592
140 Ga0500556_0000163 3300053104 Bacteria 54246
141 Ga0500593_000495 3300053117 Bacteria 15558
142 Ga0500593_013964 3300053117 Bacteria 3437
143 Ga0500559_0001858 3300053136 Bacteria 11495
144 Ga0500645_013944 3300053730 Bacteria 2571
145 Ga0501084_0278771 3300054114 Bacteria 1412

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046675 Ga0495657_0273812 Ga0495657_0273812_97_999 300
2 3300048906 Ga0496103_0343654 Ga0496103_0343654_25_927 300
3 3300048909 Ga0496106_0352695 Ga0496106_0352695_18_959 313
4 3300028794 Ga0307515_10106861 Ga0307515_101068612 333
5 3300053104 Ga0500556_0000163 Ga0500556_0000163_30292_31350 344
6 3300053117 Ga0500593_013964 Ga0500593_013964_1830_2888 344
7 3300053136 Ga0500559_0001858 Ga0500559_0001858_6936_8033 344
8 3300049583 Ga0501067_0032898 Ga0501067_0032898_330_1397 345
9 3300049589 Ga0501073_0000015 Ga0501073_0000015_112441_113508 345
10 3300048911 Ga0496108_0025341 Ga0496108_0025341_732_1781 349
11 3300048912 Ga0496109_0146941 Ga0496109_0146941_166_1215 349
12 3300048917 Ga0496114_0312795 Ga0496114_0312795_276_1325 349
13 3300049579 Ga0501043_0011362 Ga0501043_0011362_4120_5193 349
14 3300049581 Ga0501047_0027298 Ga0501047_0027298_4019_5092 349
15 3300049823 Ga0501044_0021416 Ga0501044_0021416_1970_3043 349
16 3300046681 Ga0495647_0050657 Ga0495647_0050657_532_1584 350
17 3300013306 Ga0163162_10214818 Ga0163162_102148181 351
18 3300013308 Ga0157375_10054954 Ga0157375_100549543 351
19 3300026121 Ga0207683_10059023 Ga0207683_100590233 351
20 3300041443 Ga0451789_0233241 Ga0451789_0233241_1296_2396 351
21 3300041451 Ga0451791_1666820 Ga0451791_1666820_685_1785 351
22 3300041452 Ga0451793_0152285 Ga0451793_0152285_284_1384 351
23 3300041512 Ga0451853_2562000 Ga0451853_2562000_616_1716 351
24 3300046459 Ga0495629_0212832 Ga0495629_0212832_54_1136 351
25 3300046511 Ga0495608_0134189 Ga0495608_0134189_370_1449 351
26 3300047673 Ga0495593_0144120 Ga0495593_0144120_60_1139 351
27 3300048905 Ga0496102_0040027 Ga0496102_0040027_2090_3172 351
28 3300048905 Ga0496102_0098226 Ga0496102_0098226_192_1274 351
29 3300048907 Ga0496104_0006958 Ga0496104_0006958_6511_7593 351
30 3300048908 Ga0496105_0000965 Ga0496105_0000965_11513_12595 351
31 3300048911 Ga0496108_0000928 Ga0496108_0000928_19844_20926 351
32 3300048911 Ga0496108_0116604 Ga0496108_0116604_844_1926 351
33 3300048912 Ga0496109_0014832 Ga0496109_0014832_3890_4972 351
34 3300048913 Ga0496110_0002066 Ga0496110_0002066_5799_6881 351
35 3300048914 Ga0496111_0000386 Ga0496111_0000386_10035_11117 351
36 3300048916 Ga0496113_0001375 Ga0496113_0001375_3478_4560 351
37 3300049569 Ga0501032_0063879 Ga0501032_0063879_122_1192 351
38 3300049570 Ga0501033_0006170 Ga0501033_0006170_1501_2571 351
39 3300049570 Ga0501033_0031543 Ga0501033_0031543_1412_2482 351
40 3300049571 Ga0501034_0069623 Ga0501034_0069623_1324_2394 351
41 3300049571 Ga0501034_0127517 Ga0501034_0127517_537_1607 351
42 3300049571 Ga0501034_0145636 Ga0501034_0145636_195_1265 351
43 3300049572 Ga0501036_0049980 Ga0501036_0049980_2298_3368 351
44 3300049572 Ga0501036_0125953 Ga0501036_0125953_17_1087 351
45 3300049572 Ga0501036_0226360 Ga0501036_0226360_62_1132 351
46 3300049573 Ga0501037_0039097 Ga0501037_0039097_1515_2585 351
47 3300049574 Ga0501038_0027865 Ga0501038_0027865_106_1176 351
48 3300049575 Ga0501039_0117711 Ga0501039_0117711_475_1545 351
49 3300049575 Ga0501039_0222320 Ga0501039_0222320_351_1421 351
50 3300049578 Ga0501042_0084020 Ga0501042_0084020_1041_2111 351
51 3300049579 Ga0501043_0059093 Ga0501043_0059093_1186_2256 351
52 3300049579 Ga0501043_0116147 Ga0501043_0116147_246_1316 351
53 3300049580 Ga0501046_0012571 Ga0501046_0012571_507_1577 351
54 3300049580 Ga0501046_0071321 Ga0501046_0071321_1458_2528 351
55 3300049581 Ga0501047_0065352 Ga0501047_0065352_1514_2584 351
56 3300049581 Ga0501047_0076176 Ga0501047_0076176_923_1993 351
57 3300049581 Ga0501047_0081487 Ga0501047_0081487_1207_2277 351
58 3300049586 Ga0501070_0082098 Ga0501070_0082098_445_1515 351
59 3300049589 Ga0501073_0017850 Ga0501073_0017850_2098_3168 351
60 3300049590 Ga0501074_0071729 Ga0501074_0071729_714_1784 351
61 3300049742 Ga0501080_0108690 Ga0501080_0108690_482_1552 351
62 3300049822 Ga0501035_0096817 Ga0501035_0096817_1011_2081 351
63 3300049822 Ga0501035_0099973 Ga0501035_0099973_573_1643 351
64 3300049823 Ga0501044_0061121 Ga0501044_0061121_1275_2345 351
65 3300049823 Ga0501044_0072468 Ga0501044_0072468_1509_2579 351
66 3300049823 Ga0501044_0103190 Ga0501044_0103190_1581_2651 351
67 3300054114 Ga0501084_0278771 Ga0501084_0278771_275_1345 351
68 3300006038 Ga0075365_10006122 Ga0075365_100061223 352
69 3300006186 Ga0075369_10014624 Ga0075369_100146244 352
70 3300048911 Ga0496108_0082420 Ga0496108_0082420_372_1433 352
71 3300048917 Ga0496114_0000657 Ga0496114_0000657_21196_22332 352
72 3300050491 nmdc:mga00v17_237852_c1 nmdc:mga00v17_237852_c1_19_1077 352
73 3300050492 nmdc:mga0yw44_4864_c1 nmdc:mga0yw44_4864_c1_2369_3427 352
74 3300053096 Ga0500641_0002437 Ga0500641_0002437_4643_5701 352
75 iso_pu_bacteria 2808606306 2808630818 352
76 iso_pu_bacteria 2906799679 2906803178 352
77 3300046471 Ga0495650_0000835 Ga0495650_0000835_3202_4266 353
78 3300048929 Ga0496126_0078998 Ga0496126_0078998_578_1645 353
79 3300049586 Ga0501070_0106769 Ga0501070_0106769_1005_2075 353
80 iso_pu_bacteria 2643221542 2643732050 353
81 iso_pu_bacteria 2643221553 2643785189 353
82 iso_pu_bacteria 2643221630 2644170865 353
83 iso_pu_bacteria 2747842429 2747952871 353
84 iso_pu_bacteria 2808606447 2809227756 353
85 iso_pu_bacteria 2852632344 2852634511 353
86 iso_pu_bacteria 2852646457 2852646761 353
87 iso_pu_bacteria 2852663356 2852664600 353
88 iso_pu_bacteria 2857723135 2857723218 353
89 iso_pu_bacteria 2919395869 2919395997 353
90 iso_pu_bacteria 2945968032 2945971203 353
91 iso_pu_bacteria 2946041624 2946043536 353
92 iso_pu_bacteria 2946080515 2946081538 353
93 iso_pu_bacteria 8004182704 8004185880 353
94 iso_pu_bacteria 8045830549 8045831980 353
95 iso_pu_bacteria 2643221566 2643848783 354
96 iso_pu_bacteria 2643221575 2643885912 354
97 iso_pu_bacteria 2757320536 2758226490 354
98 iso_pu_bacteria 2773857758 2774380024 354
99 iso_pu_bacteria 2773857763 2774399042 354
100 iso_pu_bacteria 2811994872 2812323680 354
101 iso_pu_bacteria 2821268502 2821270387 354
102 iso_pu_bacteria 2857720070 2857721952 354
103 iso_pu_bacteria 2904509784 2904511638 354
104 iso_pu_bacteria 2908678064 2908680565 354
105 iso_pu_bacteria 2919069694 2919071879 354
106 iso_pu_bacteria 2928090899 2928091786 354
107 iso_pu_bacteria 2977228692 2977231771 354
108 iso_pu_bacteria 2977264416 2977267086 354
109 iso_pu_bacteria 2984542743 2984545082 354
110 3300041496 Ga0451839_0521350 Ga0451839_0521350_253_1344 355
111 3300047320 Ga0495672_0023940 Ga0495672_0023940_1483_2553 356
112 3300048920 Ga0496117_0004509 Ga0496117_0004509_3924_4997 356
113 3300048922 Ga0496119_0001131 Ga0496119_0001131_24027_25100 356
114 3300048923 Ga0496120_0106952 Ga0496120_0106952_156_1229 356
115 3300048925 Ga0496122_0000036 Ga0496122_0000036_83902_84975 356
116 3300048926 Ga0496123_0000011 Ga0496123_0000011_83978_85051 356
117 3300048928 Ga0496125_0110632 Ga0496125_0110632_725_1795 356
118 3300053117 Ga0500593_000495 Ga0500593_000495_4010_5095 356
119 iso_pu_bacteria 2990256926 2990257841 356
120 3300002738 JGI25154J39366_1002161 JGI25154J39366_10021613 357
121 3300003578 Ga0006562J51391_1113720 Ga0006562J51391_11137206 357
122 3300003578 Ga0006562J51391_1113722 Ga0006562J51391_11137223 357
123 3300006048 Ga0075363_100030466 Ga0075363_1000304662 357
124 3300006051 Ga0075364_10081221 Ga0075364_100812212 357
125 3300006051 Ga0075364_10082361 Ga0075364_100823612 357
126 3300006178 Ga0075367_10000554 Ga0075367_100005549 357
127 3300006353 Ga0075370_10023169 Ga0075370_100231694 357
128 3300009545 Ga0105237_10071552 Ga0105237_100715522 357
129 3300013104 Ga0157370_10174334 Ga0157370_101743342 357
130 3300013105 Ga0157369_10072548 Ga0157369_100725483 357
131 3300013250 Ga0171462_1003 Ga0171462_10032 357
132 3300013306 Ga0163162_10055717 Ga0163162_100557172 357
133 3300013307 Ga0157372_10063514 Ga0157372_100635144 357
134 3300025246 Ga0209646_1000092 Ga0209646_100009247 357
135 3300025935 Ga0207709_10037945 Ga0207709_100379452 357
136 3300027876 Ga0209974_10005822 Ga0209974_100058225 357
137 3300031901 Ga0307406_10000018 Ga0307406_1000001894 357
138 3300031901 Ga0307406_10000608 Ga0307406_1000060810 357
139 3300031901 Ga0307406_10290136 Ga0307406_102901361 357
140 3300032004 Ga0307414_10162941 Ga0307414_101629412 357
141 3300032004 Ga0307414_10249763 Ga0307414_102497631 357
142 3300044683 Ga0466965_0028992 Ga0466965_0028992_1361_2437 357
143 3300046453 Ga0495627_000852 Ga0495627_000852_7164_8237 357
144 3300046543 Ga0495645_0040903 Ga0495645_0040903_1949_3025 357
145 3300048903 Ga0496100_0123671 Ga0496100_0123671_555_1631 357
146 3300048905 Ga0496102_0040229 Ga0496102_0040229_1052_2128 357
147 3300048906 Ga0496103_0050244 Ga0496103_0050244_1082_2158 357
148 3300048913 Ga0496110_0023950 Ga0496110_0023950_1271_2347 357
149 3300048915 Ga0496112_0149804 Ga0496112_0149804_163_1239 357
150 3300048917 Ga0496114_0022798 Ga0496114_0022798_1394_2470 357
151 3300048917 Ga0496114_0084556 Ga0496114_0084556_166_1242 357
152 3300048918 Ga0496115_0055037 Ga0496115_0055037_446_1522 357
153 3300048920 Ga0496117_0001216 Ga0496117_0001216_4895_5968 357
154 3300048922 Ga0496119_0000945 Ga0496119_0000945_36173_37249 357
155 3300048922 Ga0496119_0008431 Ga0496119_0008431_3827_4903 357
156 3300048923 Ga0496120_0034900 Ga0496120_0034900_723_1799 357
157 3300048925 Ga0496122_0010504 Ga0496122_0010504_7882_8955 357
158 3300048925 Ga0496122_0027383 Ga0496122_0027383_1714_2790 357
159 3300048925 Ga0496122_0057123 Ga0496122_0057123_1405_2478 357
160 3300048926 Ga0496123_0070109 Ga0496123_0070109_691_1767 357
161 3300048926 Ga0496123_0084734 Ga0496123_0084734_58_1131 357
162 3300048927 Ga0496124_0017657 Ga0496124_0017657_4713_5789 357
163 3300048927 Ga0496124_0221077 Ga0496124_0221077_48_1121 357
164 3300048928 Ga0496125_0003908 Ga0496125_0003908_10524_11597 357
165 3300048928 Ga0496125_0012531 Ga0496125_0012531_2687_3760 357
166 3300048929 Ga0496126_0023976 Ga0496126_0023976_1401_2474 357
167 3300049130 Ga0501310_000013 Ga0501310_000013_11165_12244 357
168 3300049571 Ga0501034_0000809 Ga0501034_0000809_24205_25278 357
169 3300049571 Ga0501034_0168914 Ga0501034_0168914_959_2032 357
170 3300049574 Ga0501038_0011429 Ga0501038_0011429_858_1931 357
171 3300049586 Ga0501070_0024110 Ga0501070_0024110_3866_4942 357
172 3300050490 nmdc:mga03n38_10342_c1 nmdc:mga03n38_10342_c1_855_1931 357
173 3300050491 nmdc:mga00v17_25287_c1 nmdc:mga00v17_25287_c1_2030_3106 357
174 3300050491 nmdc:mga00v17_50281_c1 nmdc:mga00v17_50281_c1_192_1265 357
175 3300050491 nmdc:mga00v17_53460_c2 nmdc:mga00v17_53460_c2_712_1785 357
176 3300050491 nmdc:mga00v17_84087_c1 nmdc:mga00v17_84087_c1_802_1878 357
177 3300050492 nmdc:mga0yw44_1333_c1 nmdc:mga0yw44_1333_c1_1856_2932 357
178 3300053730 Ga0500645_013944 Ga0500645_013944_878_1978 357
179 iso_pu_bacteria 2585428094 2587864436 357
180 iso_pu_bacteria 2643221649 2644280409 357
181 iso_pu_bacteria 2808606372 2808901505 357
182 iso_pu_bacteria 2844852863 2844855900 357
183 iso_pu_bacteria 2857729791 2857730317 357
184 iso_pu_bacteria 2928121344 2928123532 357
185 iso_pu_bacteria 2974294766 2974297544 357
186 iso_pu_bacteria 2974324384 2974326219 357

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07687

M20_dimer

Peptidase dimerisation domain

199

303

0.94

PF01546

Peptidase_M20

Peptidase family M20/M25/M40

97

387

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
3tx8-assembly1.cif.gz_A-2 crystal structure of a succinyl-diaminopimelate desuccinylase (arge) from corynebacterium glutamicum atcc 13032 at 2.97 a resolution 0.9112 4 355
3tx8-assembly1.cif.gz_A-2 crystal structure of a succinyl-diaminopimelate desuccinylase (arge) from corynebacterium glutamicum atcc 13032 at 2.97 a resolution 0.8967 4 355
3ct9-assembly1.cif.gz_B crystal structure of a putative zinc peptidase (np_812461.1) from bacteroides thetaiotaomicron vpi-5482 at 2.31 a resolution 0.8461 5 356
3ct9-assembly1.cif.gz_B crystal structure of a putative zinc peptidase (np_812461.1) from bacteroides thetaiotaomicron vpi-5482 at 2.31 a resolution 0.8239 5 356
4ppz-assembly1.cif.gz_A crystal structure of zinc-bound succinyl-diaminopimelate desuccinylase from neisseria meningitidis mc58 0.8202 9 354
ID Description Score Start End Superfamily
af_P9WHS9_166_276_3.40.630.10 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.9825 171 278 3.40.630.10
af_P9WHS9_166_276_3.40.630.10 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.9479 171 278 3.40.630.10
3tx8A01 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.9293 4 355 3.40.630.10
3tx8A01 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.9218 4 355 3.40.630.10
3ct9B02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.8436 172 276 3.30.70.360
ID Description Score Start End GO Terms
AF-A0A7I7JJV7-F1-model_v4 Succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) 0.9815 1 355 GO:0006526
GO:0008777
GO:0009014
GO:0009089
GO:0046872
AF-A0A6G9ZAZ3-F1-model_v4 Succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) 0.9802 2 357 GO:0006526
GO:0008777
GO:0009014
GO:0009089
GO:0046872
AF-A0A370H8M9-F1-model_v4 Succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) 0.9801 2 357 GO:0006526
GO:0008777
GO:0009014
GO:0009089
GO:0046872
AF-W4U5I9-F1-model_v4 deleted 0.9794 126 357
AF-A0A7G7MK06-F1-model_v4 Succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) 0.9788 2 354 GO:0006526
GO:0008777
GO:0009014
GO:0009089
GO:0046872

Feature Viewer

pLDDT pTM Quality
94.22 0.88 High
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Predicted Structure (AlphaFold2)

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