F285823

General Info

Members Datasets Scaffolds Average Seq Length
186 145 372 453

Family's Representative Sequence

Representative Sequence 3300006847|Ga0075431_100022729|Ga0075431_1000227292
Length 482
Sequence MSKKYDAIVIGAGQSGPALAERFVNEGMRVAVIERKHFGGTCVNTGCMPTKTLVASARVAHMARRAAEFGIDVGGPLKVDMKRVKARKDAIVLGSRNGIKDRLEGSENTTVYQGHARFTGAKTVSVNGETLEADKIVINTGGRALVPSITGLETVSYFTNSSILEADNLPEHLLIIGGSYIGLEFAQVYRRLGSRVTVIEMADRLIAREDADVSEGVRDILEDEGIDIRLRAKCLAVEKDGSGIAVQLDCSSGEPRVKGSHLLLAVGRRPNTDELDLGKAGVKTDAKGFIIVDDQCRTSVEGIWAVGDVNGRGAFTHTSWNDFEIVAANLFDKDPRRISHRIPCYGLFIDPPLGRVGLTENEVRAQGINALTAKLSMESVGRAYERGETRGFMKVIVNAETKRILGAAILGIEGDEVVHAFLDVMAANAPYMAISRTVHIHPTVSEYLPVLLSDLQPLVYEADGKQRELMEGNDAFAQHHAA

Samples

Sample ID Description Type Environment
1 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
2 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
3 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
4 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
5 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
6 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
7 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
8 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
9 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
10 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
11 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
12 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
13 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
14 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
15 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
16 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
17 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
18 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
19 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
20 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
21 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
22 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
23 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
24 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
25 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
29 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
30 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
32 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
33 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
34 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
35 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
36 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
37 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
38 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
39 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
40 3300015684 Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.2_F02 Metagenome Unclassified
41 3300015685 Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.5_G12 Metagenome Unclassified
42 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
43 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
44 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
45 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
61 3300027462 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes) (version 2) Metagenome Rhizosphere
62 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
63 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
67 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
68 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
69 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
70 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
71 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
72 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
73 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
74 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
75 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
76 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
77 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
78 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
79 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
80 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
81 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
82 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
83 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
84 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
85 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
86 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
87 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
88 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
89 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
90 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
91 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
92 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
93 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
94 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
95 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
96 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
97 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
98 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
99 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
100 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
101 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
102 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
103 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
104 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
105 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
106 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
107 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
108 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
109 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
115 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
116 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
117 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
118 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
119 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
120 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
121 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
122 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
123 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
124 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
125 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
126 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
127 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
128 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
129 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
130 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
131 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
132 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
133 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
134 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
135 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
136 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
137 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
138 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
139 2508501122 Ensifer yinggardensis WSM1721 Isolate Nodule
140 2509276019 Ensifer aridi TW10 Isolate Nodule
141 2511231027 Phyllobacterium sp. YR531 Isolate Rhizosphere
142 2558860100 Sinorhizobium sp. PC2 Isolate Nodule
143 2850079185 Ensifer aridi JNVU TP6 Isolate Unclassified
144 2928521798 Phyllobacterium ifriqiyense 1451 Isolate Rhizosphere
145 2954011201 Phyllobacterium ifrigiyense W4I11 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.24
Metatranscriptomes 0
Isolates 3.76

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.91
Nodule 2.69
Rhizoplane 11.83
Rhizosphere 71.51
Stem 0
Stem Tuber 0
Unclassified 2.15

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075431_100022729 3300006847 Bacteria 6410
2 Ga0070689_100018786 3300005340 Bacteria 5101
3 Ga0070661_100032420 3300005344 Bacteria 3783
4 Ga0070671_100010224 3300005355 Bacteria 7533
5 Ga0070671_100012706 3300005355 Bacteria 6787
6 Ga0070688_100160456 3300005365 Bacteria 1544
7 Ga0070667_100042217 3300005367 Bacteria 3826
8 Ga0070681_10203058 3300005458 Bacteria 1900
9 Ga0070672_100045221 3300005543 Bacteria 3404
10 Ga0070686_100088760 3300005544 Bacteria 2064
11 Ga0068857_100065394 3300005577 Bacteria 3233
12 Ga0068852_100005527 3300005616 Bacteria 9059
13 Ga0068859_100005685 3300005617 Bacteria 12695
14 Ga0068859_100040763 3300005617 Bacteria 4663
15 Ga0068859_100059435 3300005617 Bacteria 3851
16 Ga0068864_100111129 3300005618 Bacteria 2441
17 Ga0068851_10005066 3300005834 Bacteria 5975
18 Ga0068863_100004010 3300005841 Bacteria 14540
19 Ga0068858_100004745 3300005842 Bacteria 13312
20 Ga0068860_100068684 3300005843 Bacteria 3367
21 Ga0070717_10016560 3300006028 Bacteria 5717
22 Ga0075367_10019802 3300006178 Bacteria 3736
23 Ga0075366_10017149 3300006195 Bacteria 4165
24 Ga0068871_100033508 3300006358 Bacteria 4068
25 Ga0075428_100132377 3300006844 Bacteria 2712
26 Ga0075430_100000508 3300006846 Bacteria 29229
27 Ga0075430_100001800 3300006846 Bacteria 17530
28 Ga0075430_100004203 3300006846 Bacteria 12147
29 Ga0075430_100014708 3300006846 Bacteria 6667
30 Ga0075431_100010962 3300006847 Bacteria 9122
31 Ga0075431_100044367 3300006847 Bacteria 4586
32 Ga0075431_100048218 3300006847 Bacteria 4393
33 Ga0075431_100120379 3300006847 Bacteria 2708
34 Ga0097620_100005685 3300006931 Bacteria 12695
35 Ga0097620_100040763 3300006931 Bacteria 4663
36 Ga0097620_100059436 3300006931 Bacteria 3851
37 Ga0075435_100042882 3300007076 Bacteria 3620
38 Ga0075435_100117034 3300007076 Bacteria 2221
39 Ga0105240_10000343 3300009093 Bacteria 87196
40 Ga0105240_10000525 3300009093 Bacteria 70614
41 Ga0111539_10242375 3300009094 Bacteria 2099
42 Ga0105245_10104962 3300009098 Bacteria 2620
43 Ga0105247_10003535 3300009101 Bacteria 10157
44 Ga0114129_10193993 3300009147 Bacteria 2756
45 Ga0105241_10009979 3300009174 Bacteria 6976
46 Ga0105242_10113172 3300009176 Bacteria 2317
47 Ga0105248_10001750 3300009177 Bacteria 24170
48 Ga0105248_10080792 3300009177 Bacteria 3655
49 Ga0105238_10028006 3300009551 Bacteria 5741
50 Ga0157369_10000057 3300013105 Bacteria 157096
51 Ga0157375_10085339 3300013308 Bacteria 3207
52 Ga0163163_10030541 3300014325 Bacteria 5193
53 Ga0157380_10100676 3300014326 Bacteria 2406
54 Ga0157379_10020136 3300014968 Bacteria 5897
55 Ga0183365_10001 3300015684 Bacteria 2090444
56 Ga0183369_1015 3300015685 Bacteria 176552
57 Ga0163161_10018564 3300017792 Bacteria 4873
58 Ga0214543_1000012 3300021327 Bacteria 338982
59 Ga0209129_1004409 3300025258 Bacteria 5502
60 Ga0207656_10006353 3300025321 Bacteria 4240
61 Ga0207710_10001036 3300025900 Bacteria 14402
62 Ga0207707_10110383 3300025912 Bacteria 2404
63 Ga0207695_10000318 3300025913 Bacteria 116126
64 Ga0207695_10000382 3300025913 Bacteria 100524
65 Ga0207671_10001767 3300025914 Bacteria 24286
66 Ga0207649_10109391 3300025920 Bacteria 1844
67 Ga0207681_10134821 3300025923 Bacteria 1831
68 Ga0207694_10001224 3300025924 Bacteria 22235
69 Ga0207644_10017702 3300025931 Bacteria 4817
70 Ga0207644_10042423 3300025931 Bacteria 3224
71 Ga0207670_10005707 3300025936 Bacteria 6859
72 Ga0207691_10000699 3300025940 Bacteria 33182
73 Ga0207658_10017303 3300025986 Bacteria 4965
74 Ga0207641_10004822 3300026088 Bacteria 11618
75 Ga0207674_10054709 3300026116 Bacteria 4062
76 Ga0207698_10001914 3300026142 Bacteria 12198
77 Ga0209281_1000087 3300027111 Bacteria 246142
78 Ga0210000_1001154 3300027462 Bacteria 3710
79 Ga0207428_10038577 3300027907 Bacteria 3882
80 Ga0268266_10160319 3300028379 Bacteria 2034
81 Ga0268265_10112463 3300028380 Bacteria 2226
82 Ga0268264_10022539 3300028381 Bacteria 5141
83 Ga0307511_10000407 3300030521 Bacteria 45851
84 Ga0307511_10001159 3300030521 Bacteria 28061
85 Ga0307511_10007737 3300030521 Bacteria 10800
86 Ga0307511_10061498 3300030521 Bacteria 2861
87 Ga0307408_100091694 3300031548 Bacteria 2295
88 Ga0307416_100164821 3300032002 Bacteria 2054
89 Ga0373946_0015278 3300035171 Bacteria 2909
90 Ga0373927_0030261 3300035695 Bacteria 3533
91 Ga0373947_0102615 3300035725 Bacteria 1799
92 Ga0373925_0020262 3300037068 Bacteria 4840
93 Ga0395898_0105578 3300037466 Bacteria 2701
94 Ga0395905_0060926 3300037471 Bacteria 3529
95 Ga0395901_0318969 3300038443 Bacteria 1608
96 Ga0436360_0367965 3300039438 Bacteria 2160
97 Ga0436363_0770282 3300039450 Bacteria 2693
98 Ga0450908_000023 3300042184 Bacteria 36671
99 Ga0466957_0002322 3300044842 Bacteria 10201
100 Ga0495629_0064479 3300046459 Bacteria 2558
101 Ga0495638_0076965 3300046460 Bacteria 2032
102 Ga0495606_0011999 3300046507 Bacteria 6997
103 Ga0495632_0008675 3300046519 Bacteria 6207
104 Ga0495640_0028703 3300046533 Bacteria 4003
105 Ga0495656_0013916 3300046615 Bacteria 3005
106 Ga0495671_0039822 3300046692 Bacteria 2371
107 Ga0495604_0080482 3300047317 Bacteria 2441
108 Ga0495684_0231866 3300047471 Bacteria 1350
109 Ga0496100_0004368 3300048903 Bacteria 7487
110 Ga0496101_0000946 3300048904 Bacteria 17119
111 Ga0496101_0005402 3300048904 Bacteria 8141
112 Ga0496101_0117528 3300048904 Bacteria 2008
113 Ga0496102_0006848 3300048905 Bacteria 9726
114 Ga0496104_0030456 3300048907 Bacteria 5014
115 Ga0496104_0055202 3300048907 Bacteria 3756
116 Ga0496104_0086019 3300048907 Bacteria 3001
117 Ga0496105_0073679 3300048908 Bacteria 2821
118 Ga0496105_0237812 3300048908 Bacteria 1479
119 Ga0496106_0001831 3300048909 Bacteria 15915
120 Ga0496107_0012964 3300048910 Bacteria 5825
121 Ga0496108_0048381 3300048911 Bacteria 3555
122 Ga0496109_0007810 3300048912 Bacteria 9062
123 Ga0496109_0077087 3300048912 Bacteria 3067
124 Ga0496110_0022804 3300048913 Bacteria 5319
125 Ga0496110_0066662 3300048913 Bacteria 3184
126 Ga0496111_0146515 3300048914 Bacteria 1751
127 Ga0496112_0009073 3300048915 Bacteria 8936
128 Ga0496112_0140269 3300048915 Bacteria 2387
129 Ga0496113_0002911 3300048916 Bacteria 10097
130 Ga0496115_0198005 3300048918 Bacteria 1660
131 Ga0496117_0002398 3300048920 Bacteria 23826
132 Ga0496118_0000224 3300048921 Bacteria 98813
133 Ga0496119_0000139 3300048922 Bacteria 101548
134 Ga0496120_0000862 3300048923 Bacteria 42878
135 Ga0496121_0000241 3300048924 Bacteria 117612
136 Ga0496121_0002030 3300048924 Bacteria 32054
137 Ga0496122_0040248 3300048925 Bacteria 3718
138 Ga0501034_0050674 3300049571 Bacteria 4187
139 Ga0501038_0087546 3300049574 Unclassified 2616
140 Ga0501042_0042156 3300049578 Bacteria 3248
141 Ga0501046_0006170 3300049580 Bacteria 10641
142 Ga0501048_0014698 3300049582 Bacteria 5791
143 Ga0501071_0015673 3300049587 Bacteria 5204
144 Ga0501072_0100187 3300049588 Unclassified 2303
145 Ga0501075_0001740 3300049591 Bacteria 14312
146 Ga0501076_0003169 3300049592 Bacteria 11472
147 Ga0501076_0088228 3300049592 Bacteria 2493
148 Ga0501076_0206909 3300049592 Bacteria 1603
149 Ga0501079_0020101 3300049741 Bacteria 5102
150 Ga0501080_0058490 3300049742 Unclassified 3588
151 Ga0501045_0047321 3300049824 Bacteria 3133
152 nmdc:mga05p37_104356_c1 3300050507 Bacteria 3487
153 nmdc:mga05p37_144185_c1 3300050507 Bacteria 2917
154 nmdc:mga05p37_183678_c1 3300050507 Bacteria 1716
155 nmdc:mga0qj67_10512_c1 3300050509 Bacteria 6913
156 nmdc:mga0qj67_1312_c1 3300050509 Bacteria 17452
157 nmdc:mga0qj67_2273_c1 3300050509 Bacteria 13658
158 nmdc:mga06r32_27645_c1 3300050510 Bacteria 5303
159 nmdc:mga06r32_34812_c1 3300050510 Bacteria 4751
160 nmdc:mga06r32_35052_c1 3300050510 Bacteria 4735
161 nmdc:mga06r32_5827_c1 3300050510 Bacteria 11096
162 nmdc:mga06r32_65314_c1 3300050510 Bacteria 3509
163 nmdc:mga08y16_158587_c1 3300050511 Bacteria 2351
164 nmdc:mga08y16_60872_c1 3300050511 Bacteria 3942
165 nmdc:mga0n895_96992_c1 3300050512 Bacteria 2953
166 nmdc:mga08x19_86965_c1 3300050514 Bacteria 2059
167 nmdc:mga0a205_102602_c1 3300050515 Bacteria 2759
168 Ga0500646_0001360 3300053090 Bacteria 6496
169 Ga0500555_003459 3300053103 Bacteria 4500
170 Ga0500655_005096 3300053133 Bacteria 2365
171 Ga0500559_0012798 3300053136 Bacteria 3562
172 Ga0500573_0002133 3300053140 Bacteria 9757
173 Ga0500590_019888 3300053148 Bacteria 3481
174 Ga0500604_0008529 3300053151 Bacteria 2721
175 Ga0500616_0020815 3300053153 Bacteria 3683
176 Ga0501084_0012969 3300054114 Bacteria 6900
177 Ga0501082_0031517 3300060353 Unclassified 4572
178 Ga0530510_0018846 3300061734 Bacteria 4895
179 Ga0530510_0110294 3300061734 Bacteria 2015
180 2509109106 2508501122 Bacteria 6292184
181 2509377586 2509276019 Bacteria 6802256
182 2511389213 2511231027 Bacteria 5013807
183 2558865126 2558860100 Bacteria 8458965
184 2850084838 2850079185 Bacteria 6848280
185 2928522107 2928521798 Bacteria 4960112
186 2954014473 2954011201 Bacteria 4762601
187 Ga0075431_100022729
188 Ga0070689_100018786
189 Ga0070661_100032420
190 Ga0070671_100010224
191 Ga0070671_100012706
192 Ga0070688_100160456
193 Ga0070667_100042217
194 Ga0070681_10203058
195 Ga0070672_100045221
196 Ga0070686_100088760
197 Ga0068857_100065394
198 Ga0068852_100005527
199 Ga0068859_100005685
200 Ga0068859_100040763
201 Ga0068859_100059435
202 Ga0068864_100111129
203 Ga0068851_10005066
204 Ga0068863_100004010
205 Ga0068858_100004745
206 Ga0068860_100068684
207 Ga0070717_10016560
208 Ga0075367_10019802
209 Ga0075366_10017149
210 Ga0068871_100033508
211 Ga0075428_100132377
212 Ga0075430_100000508
213 Ga0075430_100001800
214 Ga0075430_100004203
215 Ga0075430_100014708
216 Ga0075431_100010962
217 Ga0075431_100044367
218 Ga0075431_100048218
219 Ga0075431_100120379
220 Ga0097620_100005685
221 Ga0097620_100040763
222 Ga0097620_100059436
223 Ga0075435_100042882
224 Ga0075435_100117034
225 Ga0105240_10000343
226 Ga0105240_10000525
227 Ga0111539_10242375
228 Ga0105245_10104962
229 Ga0105247_10003535
230 Ga0114129_10193993
231 Ga0105241_10009979
232 Ga0105242_10113172
233 Ga0105248_10001750
234 Ga0105248_10080792
235 Ga0105238_10028006
236 Ga0157369_10000057
237 Ga0157375_10085339
238 Ga0163163_10030541
239 Ga0157380_10100676
240 Ga0157379_10020136
241 Ga0183365_10001
242 Ga0183369_1015
243 Ga0163161_10018564
244 Ga0214543_1000012
245 Ga0209129_1004409
246 Ga0207656_10006353
247 Ga0207710_10001036
248 Ga0207707_10110383
249 Ga0207695_10000318
250 Ga0207695_10000382
251 Ga0207671_10001767
252 Ga0207649_10109391
253 Ga0207681_10134821
254 Ga0207694_10001224
255 Ga0207644_10017702
256 Ga0207644_10042423
257 Ga0207670_10005707
258 Ga0207691_10000699
259 Ga0207658_10017303
260 Ga0207641_10004822
261 Ga0207674_10054709
262 Ga0207698_10001914
263 Ga0209281_1000087
264 Ga0210000_1001154
265 Ga0207428_10038577
266 Ga0268266_10160319
267 Ga0268265_10112463
268 Ga0268264_10022539
269 Ga0307511_10000407
270 Ga0307511_10001159
271 Ga0307511_10007737
272 Ga0307511_10061498
273 Ga0307408_100091694
274 Ga0307416_100164821
275 Ga0373946_0015278
276 Ga0373927_0030261
277 Ga0373947_0102615
278 Ga0373925_0020262
279 Ga0395898_0105578
280 Ga0395905_0060926
281 Ga0395901_0318969
282 Ga0436360_0367965
283 Ga0436363_0770282
284 Ga0450908_000023
285 Ga0466957_0002322
286 Ga0495629_0064479
287 Ga0495638_0076965
288 Ga0495606_0011999
289 Ga0495632_0008675
290 Ga0495640_0028703
291 Ga0495656_0013916
292 Ga0495671_0039822
293 Ga0495604_0080482
294 Ga0495684_0231866
295 Ga0496100_0004368
296 Ga0496101_0000946
297 Ga0496101_0005402
298 Ga0496101_0117528
299 Ga0496102_0006848
300 Ga0496104_0030456
301 Ga0496104_0055202
302 Ga0496104_0086019
303 Ga0496105_0073679
304 Ga0496105_0237812
305 Ga0496106_0001831
306 Ga0496107_0012964
307 Ga0496108_0048381
308 Ga0496109_0007810
309 Ga0496109_0077087
310 Ga0496110_0022804
311 Ga0496110_0066662
312 Ga0496111_0146515
313 Ga0496112_0009073
314 Ga0496112_0140269
315 Ga0496113_0002911
316 Ga0496115_0198005
317 Ga0496117_0002398
318 Ga0496118_0000224
319 Ga0496119_0000139
320 Ga0496120_0000862
321 Ga0496121_0000241
322 Ga0496121_0002030
323 Ga0496122_0040248
324 Ga0501034_0050674
325 Ga0501038_0087546
326 Ga0501042_0042156
327 Ga0501046_0006170
328 Ga0501048_0014698
329 Ga0501071_0015673
330 Ga0501072_0100187
331 Ga0501075_0001740
332 Ga0501076_0003169
333 Ga0501076_0088228
334 Ga0501076_0206909
335 Ga0501079_0020101
336 Ga0501080_0058490
337 Ga0501045_0047321
338 nmdc:mga05p37_104356_c1
339 nmdc:mga05p37_144185_c1
340 nmdc:mga05p37_183678_c1
341 nmdc:mga0qj67_10512_c1
342 nmdc:mga0qj67_1312_c1
343 nmdc:mga0qj67_2273_c1
344 nmdc:mga06r32_27645_c1
345 nmdc:mga06r32_34812_c1
346 nmdc:mga06r32_35052_c1
347 nmdc:mga06r32_5827_c1
348 nmdc:mga06r32_65314_c1
349 nmdc:mga08y16_158587_c1
350 nmdc:mga08y16_60872_c1
351 nmdc:mga0n895_96992_c1
352 nmdc:mga08x19_86965_c1
353 nmdc:mga0a205_102602_c1
354 Ga0500646_0001360
355 Ga0500555_003459
356 Ga0500655_005096
357 Ga0500559_0012798
358 Ga0500573_0002133
359 Ga0500590_019888
360 Ga0500604_0008529
361 Ga0500616_0020815
362 Ga0501084_0012969
363 Ga0501082_0031517
364 Ga0530510_0018846
365 Ga0530510_0110294
366 2509109106
367 2509377586
368 2511389213
369 2558865126
370 2850084838
371 2928522107
372 2954014473

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02852

Pyr_redox_dim

Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain

344

451

0.97

PF00070

Pyr_redox

Pyridine nucleotide-disulphide oxidoreductase

172

253

0.94

PF07992

Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

5

322

0.93

PF13738

Pyr_redox_3

Pyridine nucleotide-disulphide oxidoreductase

100

307

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
1kdg-assembly1.cif.gz_B crystal structure of the flavin domain of cellobiose dehydrogenase 0.9732 4 36
2vvm-assembly1.cif.gz_A the structure of mao-n-d5, a variant of monoamine oxidase from aspergillus niger. 0.9622 5 35
3zdn-assembly1.cif.gz_B d11-c mutant of monoamine oxidase from aspergillus niger 0.9619 5 35
4jq9-assembly1.cif.gz_A dihydrolipoyl dehydrogenase of escherichia coli pyruvate dehydrogenase complex 0.9424 1 452
1vg9-assembly3.cif.gz_E the crystal structures of the rep-1 protein in complex with c-terminally truncated rab7 protein 0.9412 4 41
ID Description Score Start End Superfamily
af_A0A1D6LYX0_29_117_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9727 163 232 3.50.50.60
af_B0G160_35_582_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9642 6 36 3.50.50.60
af_Q8I5A0_386_506_3.30.390.30 Alpha Beta;2-Layer Sandwich;Enolase-like; domain 1;FAD/NAD-linked reductase, C-terminal dimerisation domain 0.9477 342 452 3.30.390.30
4ywoA02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9451 144 265 3.50.50.60
5x1yD03 Alpha Beta;2-Layer Sandwich;Enolase-like; domain 1;FAD/NAD-linked reductase, C-terminal dimerisation domain 0.9448 342 451 3.30.390.30
ID Description Score Start End GO Terms
AF-A0A2V9VKZ5-F1-model_v4 FAD-containing oxidoreductase 0.9762 1 124 GO:0003955
GO:0050660
AF-A0A1Y6BC91-F1-model_v4 Acetolactate synthase large subunit 0.9732 1 397 GO:0000287
GO:0003984
GO:0005948
GO:0009097
GO:0009099
GO:0016491
GO:0030976
GO:0050660
AF-A0A4Q3WWQ1-F1-model_v4 FAD-containing oxidoreductase 0.9641 1 227 GO:0003955
GO:0050660
AF-A0A7X7A015-F1-model_v4 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) 0.9636 5 453 GO:0004148
GO:0006090
GO:0006103
GO:0050660
AF-A0A2P7P015-F1-model_v4 deleted 0.9632 354 427

Map