F285192

General Info

Members Datasets Scaffolds Average Seq Length
185 126 158 326

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2966921586|2966923098
Length 356
Sequence SDYPGEVIATLSQYSVLCLSSAMGVYALAFIFFAVDLARRASVADGESIEVIQEAERVASAAAADRAANGRATVATVGSGRTATLSRLGSRVEDEVYAAPARSTAMRVGFSLTLLAFVLHLAATVLRGIAAGRVPWANMYEFSMTGTLIIIGVFLAVQVRWDLRFLGAFVTGLVLVLLGVAIVNYYVAVVPLPPALQSYWLVIHVLVAILGTAFFALGFALSVTQLLQARREVSGDSPRSVLRFLRTLPGSLTLENLAYRVTIIGFILWTFTLIAGAVWAEKAWGRYWGWDTKEVWTFIIWTIYAGYIHARATRGWRGTPSAWLAIVGFAAVMFNFGVVNVFFKGLHAYSGLDTGM

Samples

Sample ID Description Type Environment
1 2643221549 Agromyces sp. Root1464 Isolate Unclassified
2 2643221616 Leifsonia sp. Root227 Isolate Unclassified
3 2643221619 Agromyces sp. Root81 Isolate Unclassified
4 2643221632 Leifsonia sp. Root112D2 Isolate Unclassified
5 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
6 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
7 2844852863 Herbiconiux flava DSM 26474 Isolate Rhizosphere
8 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
9 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
10 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
11 2897561785 Pseudoclavibacter endophyticus EGI 60007 Isolate Unclassified
12 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
13 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
14 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
15 2928153084 Leifsonia sp. 563 Isolate Unclassified
16 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
17 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
18 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
19 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
20 2966921586 Rathayibacter agropyri 617 Isolate Rhizosphere
21 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
22 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
23 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
24 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
25 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
26 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
27 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
28 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
29 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
30 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
31 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
32 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
33 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
34 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
35 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
36 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
37 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
38 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
39 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
40 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
41 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
42 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
43 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
44 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
45 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
51 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
52 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
56 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
62 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
63 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
64 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
65 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
66 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
67 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
68 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
69 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
70 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
71 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
72 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
73 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
74 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
75 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
76 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
77 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
78 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
79 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
80 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
81 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
82 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
83 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
84 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
85 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
86 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
87 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
88 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
89 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
90 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
91 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
92 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
93 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
106 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
107 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
108 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
109 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
110 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
113 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
114 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
115 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
116 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
117 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
118 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
119 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
120 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
121 8002811521 Leucobacter chinensis NC76-1 Isolate Rhizosphere
122 8046352972 Agromyces mangrovi NBRC 112812 Isolate Rhizosphere
123 8055034563 Leucobacter allii H21R-40 Isolate Rhizosphere
124 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere
125 8056037122 Herbiconiux gentiana CPCC 205716 Isolate Rhizosphere
126 8057345674 Herbiconiux aconitum CPCC 205763 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 84.32
Metatranscriptomes 1.08
Isolates 14.59

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.46
Nodule 0
Rhizoplane 4.32
Rhizosphere 63.24
Stem 0
Stem Tuber 0.54
Unclassified 12.43

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10015492 3300001979 Bacteria 2783
2 JGI24739J22299_10005973 3300001989 Bacteria 4606
3 JGI24737J22298_10004652 3300001990 Bacteria 4772
4 JGI24735J21928_10011321 3300002067 Bacteria 2831
5 JGI25164J39214_1001076 3300002772 Bacteria 8055
6 JGI25165J46597_1000005 3300003214 Bacteria 623702
7 Ga0006562J51391_1012772 3300003578 Bacteria 30815
8 Ga0055533_1000002 3300003756 Bacteria 1196393
9 Ga0055532_1004322 3300003758 Bacteria 2175
10 Ga0055525_1000142 3300003759 Bacteria 100877
11 Ga0055527_1000004 3300003760 Bacteria 570634
12 Ga0055542_1000307 3300003762 Bacteria 53734
13 Ga0055529_1000008 3300003763 Bacteria 394786
14 Ga0070668_100026869 3300005347 Bacteria 4370
15 Ga0068867_100261117 3300005459 Bacteria 1412
16 Ga0068856_100247025 3300005614 Bacteria 1800
17 Ga0105238_10317425 3300009551 Bacteria 1544
18 Ga0157369_10002153 3300013105 Bacteria 23748
19 Ga0157369_10002366 3300013105 Bacteria 22674
20 Ga0157369_10032701 3300013105 Bacteria 5717
21 Ga0157369_10082518 3300013105 Bacteria 3439
22 Ga0157369_10320377 3300013105 Bacteria 1612
23 Ga0163162_10537300 3300013306 Bacteria 1298
24 Ga0157372_10166528 3300013307 Bacteria 2549
25 Ga0157372_10607543 3300013307 Bacteria 1275
26 Ga0157375_10320631 3300013308 Bacteria 1714
27 Ga0157380_10015582 3300014326 Bacteria 5589
28 Ga0206353_10025853 3300020082 Bacteria 1358
29 Ga0209566_100013 3300025225 Bacteria 474033
30 Ga0209674_100001 3300025226 Bacteria 4013750
31 Ga0209672_100011 3300025228 Bacteria 856297
32 Ga0209147_100238 3300025229 Bacteria 54120
33 Ga0209563_100001 3300025230 Bacteria 4013775
34 Ga0209563_100348 3300025230 Bacteria 17586
35 Ga0207427_101123 3300025231 Bacteria 10698
36 Ga0209437_101149 3300025233 Bacteria 7903
37 Ga0209258_103985 3300025242 Bacteria 2953
38 Ga0209677_100001 3300025253 Bacteria 4013787
39 Ga0209677_100659 3300025253 Bacteria 18101
40 Ga0209148_1000023 3300025254 Bacteria 680511
41 Ga0209233_1000001 3300025261 Bacteria 2992747
42 Ga0209455_1000023 3300025272 Bacteria 680449
43 Ga0209455_1002992 3300025272 Bacteria 6209
44 Ga0207688_10034187 3300025901 Bacteria 2814
45 Ga0207647_10017446 3300025904 Bacteria 4879
46 Ga0207647_10047976 3300025904 Bacteria 2654
47 Ga0207668_10067542 3300025972 Bacteria 2539
48 Ga0207683_10136500 3300026121 Bacteria 2208
49 Ga0307513_10141671 3300031456 Bacteria 2329
50 Ga0307514_10001836 3300031649 Bacteria 23541
51 Ga0307409_100457595 3300031995 Bacteria 1233
52 Ga0395900_0001084 3300037418 Bacteria 34636
53 Ga0395900_0064861 3300037418 Bacteria 3752
54 Ga0395900_0095527 3300037418 Bacteria 3054
55 Ga0395898_0000270 3300037466 Bacteria 127152
56 Ga0395901_0151483 3300038443 Bacteria 2437
57 Ga0466972_0034597 3300044658 Bacteria 2474
58 Ga0466972_0095583 3300044658 Bacteria 1408
59 Ga0466965_0010875 3300044683 Bacteria 4257
60 Ga0466965_0157395 3300044683 Bacteria 1190
61 Ga0466966_0028287 3300044684 Bacteria 3652
62 Ga0466966_0076454 3300044684 Bacteria 2091
63 Ga0466961_0096096 3300044693 Bacteria 1868
64 Ga0466963_0088425 3300044694 Bacteria 2108
65 Ga0466970_0032967 3300044765 Bacteria 2737
66 Ga0466970_0062035 3300044765 Bacteria 2003
67 Ga0466957_0324389 3300044842 Bacteria 1040
68 Ga0466960_0014589 3300044901 Bacteria 3369
69 Ga0466960_0096671 3300044901 Bacteria 1514
70 Ga0466959_0018002 3300045049 Bacteria 5183
71 Ga0466958_0078618 3300045836 Bacteria 2027
72 Ga0466967_0098281 3300045976 Bacteria 2673
73 Ga0495590_0000142 3300046457 Bacteria 43345
74 Ga0495686_0036705 3300047472 Bacteria 3145
75 Ga0496100_0013443 3300048903 Bacteria 4721
76 Ga0496102_0041310 3300048905 Bacteria 4175
77 Ga0496102_0284032 3300048905 Bacteria 1560
78 Ga0496102_0299135 3300048905 Bacteria 1516
79 Ga0496107_0076406 3300048910 Bacteria 2439
80 Ga0496113_0138918 3300048916 Bacteria 1911
81 Ga0496114_0099971 3300048917 Bacteria 2474
82 Ga0496115_0032909 3300048918 Bacteria 4092
83 Ga0496117_0000034 3300048920 Bacteria 328334
84 Ga0496117_0011299 3300048920 Bacteria 8007
85 Ga0496118_0004617 3300048921 Bacteria 16177
86 Ga0496119_0046923 3300048922 Bacteria 2692
87 Ga0496121_0048482 3300048924 Bacteria 3613
88 Ga0496121_0182674 3300048924 Bacteria 1512
89 Ga0496121_0319938 3300048924 Bacteria 1045
90 Ga0496122_0001782 3300048925 Bacteria 33003
91 Ga0496122_0002771 3300048925 Bacteria 24152
92 Ga0496123_0010789 3300048926 Bacteria 8018
93 Ga0496126_0001593 3300048929 Bacteria 34557
94 Ga0496126_0029607 3300048929 Bacteria 5200
95 Ga0501031_0006453 3300049568 Bacteria 7649
96 Ga0501031_0103555 3300049568 Bacteria 1857
97 Ga0501033_0000262 3300049570 Bacteria 50390
98 Ga0501033_0067864 3300049570 Bacteria 2622
99 Ga0501034_0002595 3300049571 Bacteria 21477
100 Ga0501034_0004069 3300049571 Bacteria 16416
101 Ga0501034_0010190 3300049571 Bacteria 9806
102 Ga0501034_0024714 3300049571 Bacteria 6111
103 Ga0501034_0046090 3300049571 Bacteria 4405
104 Ga0501034_0276350 3300049571 Bacteria 1619
105 Ga0501036_0004332 3300049572 Bacteria 11455
106 Ga0501036_0231120 3300049572 Bacteria 1552
107 Ga0501037_0002799 3300049573 Bacteria 12640
108 Ga0501037_0003591 3300049573 Bacteria 11259
109 Ga0501037_0059704 3300049573 Bacteria 2781
110 Ga0501038_0006758 3300049574 Bacteria 10595
111 Ga0501038_0017383 3300049574 Bacteria 6500
112 Ga0501038_0020618 3300049574 Bacteria 5924
113 Ga0501039_0025160 3300049575 Bacteria 4573
114 Ga0501039_0116117 3300049575 Bacteria 2095
115 Ga0501041_0153873 3300049577 Bacteria 1437
116 Ga0501042_0091750 3300049578 Bacteria 2180
117 Ga0501043_0007879 3300049579 Bacteria 8424
118 Ga0501043_0011960 3300049579 Bacteria 6790
119 Ga0501043_0244869 3300049579 Bacteria 1382
120 Ga0501046_0000410 3300049580 Bacteria 42702
121 Ga0501046_0001444 3300049580 Bacteria 22852
122 Ga0501047_0000344 3300049581 Bacteria 52888
123 Ga0501047_0032889 3300049581 Bacteria 5007
124 Ga0501047_0135725 3300049581 Bacteria 2340
125 Ga0501047_0160322 3300049581 Bacteria 2121
126 Ga0501047_0274183 3300049581 Bacteria 1532
127 Ga0501047_0391364 3300049581 Bacteria 1223
128 Ga0501048_0009737 3300049582 Bacteria 7207
129 Ga0501048_0011654 3300049582 Bacteria 6557
130 Ga0501048_0041766 3300049582 Bacteria 3285
131 Ga0501068_0052440 3300049584 Bacteria 2468
132 Ga0501070_0000098 3300049586 Bacteria 75579
133 Ga0501070_0025648 3300049586 Bacteria 4944
134 Ga0501073_0004347 3300049589 Bacteria 10641
135 Ga0501080_0353535 3300049742 Bacteria 1326
136 Ga0501035_0002127 3300049822 Bacteria 19704
137 Ga0501035_0024160 3300049822 Bacteria 5576
138 Ga0501035_0036857 3300049822 Bacteria 4430
139 Ga0501044_0000317 3300049823 Bacteria 60978
140 Ga0501044_0002444 3300049823 Bacteria 21189
141 Ga0501044_0058575 3300049823 Bacteria 3949
142 Ga0501044_0076806 3300049823 Bacteria 3388
143 Ga0501044_0122762 3300049823 Bacteria 2596
144 Ga0501045_0003703 3300049824 Bacteria 10515
145 Ga0501045_0051292 3300049824 Bacteria 3011
146 Ga0500635_0000038 3300053080 Bacteria 93707
147 Ga0500650_0021532 3300053098 Bacteria 2842
148 Ga0500556_0000041 3300053104 Bacteria 134317
149 Ga0500559_0000108 3300053136 Bacteria 65474
150 Ga0500559_0039861 3300053136 Bacteria 2044
151 Ga0500568_0000003 3300053139 Bacteria 863587
152 Ga0500573_0000011 3300053140 Bacteria 209484
153 Ga0500573_0005294 3300053140 Bacteria 6897
154 Ga0500573_0010830 3300053140 Bacteria 5094
155 Ga0500573_0163607 3300053140 Bacteria 1209
156 Ga0500573_0203426 3300053140 Bacteria 1049
157 Ga0500616_0000152 3300053153 Bacteria 116194
158 Ga0500645_003576 3300053730 Bacteria 6242

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053136 Ga0500559_0000108 Ga0500559_0000108_27241_28203 276
2 3300045836 Ga0466958_0078618 Ga0466958_0078618_1047_1994 277
3 3300046457 Ga0495590_0000142 Ga0495590_0000142_42315_43289 282
4 3300025901 Ga0207688_10034187 Ga0207688_100341871 286
5 3300048918 Ga0496115_0032909 Ga0496115_0032909_1331_2287 286
6 3300053140 Ga0500573_0203426 Ga0500573_0203426_15_929 286
7 3300005459 Ga0068867_100261117 Ga0068867_1002611171 287
8 3300005347 Ga0070668_100026869 Ga0070668_1000268692 288
9 3300025972 Ga0207668_10067542 Ga0207668_100675422 288
10 3300044901 Ga0466960_0096671 Ga0466960_0096671_277_1263 288
11 3300048925 Ga0496122_0001782 Ga0496122_0001782_10602_11501 288
12 3300014326 Ga0157380_10015582 Ga0157380_100155824 289
13 3300026121 Ga0207683_10136500 Ga0207683_101365002 289
14 3300044842 Ga0466957_0324389 Ga0466957_0324389_19_1005 289
15 3300048905 Ga0496102_0284032 Ga0496102_0284032_272_1270 289
16 3300053140 Ga0500573_0010830 Ga0500573_0010830_13_927 290
17 iso_pu_bacteria 8002811521 8002813479 290
18 3300048924 Ga0496121_0319938 Ga0496121_0319938_15_920 291
19 3300013306 Ga0163162_10537300 Ga0163162_105373002 292
20 3300044684 Ga0466966_0076454 Ga0466966_0076454_258_1322 292
21 3300044658 Ga0466972_0095583 Ga0466972_0095583_317_1387 294
22 3300044683 Ga0466965_0157395 Ga0466965_0157395_94_1164 294
23 3300045049 Ga0466959_0018002 Ga0466959_0018002_3603_4667 294
24 3300053098 Ga0500650_0021532 Ga0500650_0021532_1394_2311 294
25 3300053104 Ga0500556_0000041 Ga0500556_0000041_118890_119843 294
26 3300053139 Ga0500568_0000003 Ga0500568_0000003_331720_332673 294
27 3300053140 Ga0500573_0163607 Ga0500573_0163607_36_956 294
28 3300013105 Ga0157369_10082518 Ga0157369_100825182 297
29 3300053136 Ga0500559_0039861 Ga0500559_0039861_801_1787 297
30 3300044658 Ga0466972_0034597 Ga0466972_0034597_346_1413 298
31 3300044684 Ga0466966_0028287 Ga0466966_0028287_472_1539 298
32 3300044693 Ga0466961_0096096 Ga0466961_0096096_293_1360 298
33 3300044694 Ga0466963_0088425 Ga0466963_0088425_242_1309 298
34 3300044765 Ga0466970_0032967 Ga0466970_0032967_1062_2129 298
35 3300045976 Ga0466967_0098281 Ga0466967_0098281_388_1455 298
36 3300047472 Ga0495686_0036705 Ga0495686_0036705_1644_2615 298
37 3300049586 Ga0501070_0000098 Ga0501070_0000098_73423_74508 299
38 iso_pu_bacteria 8055037949 8055039403 299
39 3300049571 Ga0501034_0024714 Ga0501034_0024714_1536_2552 300
40 3300049579 Ga0501043_0244869 Ga0501043_0244869_341_1357 300
41 3300031456 Ga0307513_10141671 Ga0307513_101416712 302
42 3300048929 Ga0496126_0001593 Ga0496126_0001593_6968_7972 302
43 3300044683 Ga0466965_0010875 Ga0466965_0010875_2845_3912 303
44 3300044765 Ga0466970_0062035 Ga0466970_0062035_231_1298 303
45 3300049568 Ga0501031_0006453 Ga0501031_0006453_1239_2213 303
46 3300049570 Ga0501033_0067864 Ga0501033_0067864_790_1764 303
47 3300049571 Ga0501034_0010190 Ga0501034_0010190_1135_2109 303
48 3300049572 Ga0501036_0004332 Ga0501036_0004332_8361_9335 303
49 3300049573 Ga0501037_0003591 Ga0501037_0003591_3002_3976 303
50 3300049574 Ga0501038_0020618 Ga0501038_0020618_4220_5194 303
51 3300049577 Ga0501041_0153873 Ga0501041_0153873_217_1281 303
52 3300049580 Ga0501046_0001444 Ga0501046_0001444_14879_15853 303
53 3300049581 Ga0501047_0032889 Ga0501047_0032889_2332_3306 303
54 3300049582 Ga0501048_0009737 Ga0501048_0009737_2697_3671 303
55 3300049584 Ga0501068_0052440 Ga0501068_0052440_20_994 303
56 3300049822 Ga0501035_0036857 Ga0501035_0036857_1574_2548 303
57 3300049823 Ga0501044_0122762 Ga0501044_0122762_181_1155 303
58 3300049824 Ga0501045_0003703 Ga0501045_0003703_6103_7077 303
59 3300031995 Ga0307409_100457595 Ga0307409_1004575951 304
60 3300053140 Ga0500573_0005294 Ga0500573_0005294_5867_6844 304
61 iso_pu_bacteria 2643221549 2643766760 304
62 3300003756 Ga0055533_1000002 Ga0055533_1000002630 305
63 3300003759 Ga0055525_1000142 Ga0055525_10001422 305
64 3300025225 Ga0209566_100013 Ga0209566_100013158 305
65 3300025226 Ga0209674_100001 Ga0209674_1000012933 305
66 3300025230 Ga0209563_100001 Ga0209563_1000012933 305
67 3300025253 Ga0209677_100001 Ga0209677_1000012933 305
68 3300031649 Ga0307514_10001836 Ga0307514_1000183613 306
69 iso_pu_bacteria 2870622029 2870625002 307
70 iso_pu_bacteria 2939657138 2939659757 308
71 3300013105 Ga0157369_10320377 Ga0157369_103203772 309
72 3300025272 Ga0209455_1002992 Ga0209455_10029922 309
73 3300049571 Ga0501034_0276350 Ga0501034_0276350_75_1193 309
74 3300049573 Ga0501037_0059704 Ga0501037_0059704_47_1165 309
75 3300049574 Ga0501038_0017383 Ga0501038_0017383_635_1753 309
76 3300049575 Ga0501039_0025160 Ga0501039_0025160_2216_3334 309
77 3300049578 Ga0501042_0091750 Ga0501042_0091750_47_1165 309
78 3300049579 Ga0501043_0011960 Ga0501043_0011960_1211_2329 309
79 3300049581 Ga0501047_0274183 Ga0501047_0274183_340_1458 309
80 3300049582 Ga0501048_0011654 Ga0501048_0011654_3384_4502 309
81 3300049586 Ga0501070_0025648 Ga0501070_0025648_61_1179 309
82 iso_pu_bacteria 2935409751 2935409927 309
83 3300053140 Ga0500573_0000011 Ga0500573_0000011_184215_185183 310
84 iso_pu_bacteria 2721755702 2723640389 310
85 iso_pu_bacteria 2939660829 2939664298 310
86 iso_pu_bacteria 2919443155 2919444273 311
87 3300049571 Ga0501034_0046090 Ga0501034_0046090_2961_4079 312
88 3300049581 Ga0501047_0135725 Ga0501047_0135725_883_2001 312
89 3300049581 Ga0501047_0391364 Ga0501047_0391364_66_1175 312
90 3300049589 Ga0501073_0004347 Ga0501073_0004347_9210_10328 312
91 3300049742 Ga0501080_0353535 Ga0501080_0353535_40_1158 312
92 3300049823 Ga0501044_0058575 Ga0501044_0058575_1156_2274 312
93 3300049824 Ga0501045_0051292 Ga0501045_0051292_1308_2426 312
94 iso_pu_bacteria 2643221619 2644113330 312
95 iso_pu_bacteria 2643221632 2644181378 312
96 3300013105 Ga0157369_10002366 Ga0157369_1000236619 313
97 3300037418 Ga0395900_0001084 Ga0395900_0001084_32275_33360 313
98 3300037466 Ga0395898_0000270 Ga0395898_0000270_1631_2716 313
99 3300049568 Ga0501031_0103555 Ga0501031_0103555_456_1472 313
100 3300049570 Ga0501033_0000262 Ga0501033_0000262_44612_45628 313
101 3300049571 Ga0501034_0004069 Ga0501034_0004069_9867_10883 313
102 3300049572 Ga0501036_0231120 Ga0501036_0231120_336_1397 313
103 3300049573 Ga0501037_0002799 Ga0501037_0002799_2991_4007 313
104 3300049574 Ga0501038_0006758 Ga0501038_0006758_6429_7445 313
105 3300049575 Ga0501039_0116117 Ga0501039_0116117_27_1043 313
106 3300049579 Ga0501043_0007879 Ga0501043_0007879_829_1845 313
107 3300049580 Ga0501046_0000410 Ga0501046_0000410_38714_39730 313
108 3300049581 Ga0501047_0000344 Ga0501047_0000344_38714_39730 313
109 3300049581 Ga0501047_0160322 Ga0501047_0160322_155_1216 313
110 3300049582 Ga0501048_0041766 Ga0501048_0041766_2162_3178 313
111 3300049822 Ga0501035_0002127 Ga0501035_0002127_5534_6550 313
112 3300049822 Ga0501035_0024160 Ga0501035_0024160_2951_4015 313
113 3300049823 Ga0501044_0000317 Ga0501044_0000317_18642_19658 313
114 3300049823 Ga0501044_0076806 Ga0501044_0076806_1200_2264 313
115 iso_pu_bacteria 2852677369 2852677439 313
116 iso_pu_bacteria 8046352972 8046354971 313
117 iso_pu_bacteria 8055034563 8055037187 313
118 3300048929 Ga0496126_0029607 Ga0496126_0029607_102_1112 314
119 iso_pu_bacteria 8056037122 8056040128 314
120 3300048925 Ga0496122_0002771 Ga0496122_0002771_18079_19140 315
121 3300048926 Ga0496123_0010789 Ga0496123_0010789_599_1660 315
122 iso_pu_bacteria 8057345674 8057347110 315
123 3300037418 Ga0395900_0064861 Ga0395900_0064861_2415_3515 316
124 3300038443 Ga0395901_0151483 Ga0395901_0151483_170_1270 316
125 3300048924 Ga0496121_0182674 Ga0496121_0182674_332_1402 316
126 3300049571 Ga0501034_0002595 Ga0501034_0002595_1656_2780 316
127 3300049823 Ga0501044_0002444 Ga0501044_0002444_2545_3669 316
128 iso_pu_bacteria 2844852863 2844854053 316
129 3300009551 Ga0105238_10317425 Ga0105238_103174252 317
130 3300013105 Ga0157369_10002153 Ga0157369_1000215323 317
131 3300013307 Ga0157372_10166528 Ga0157372_101665282 317
132 3300013308 Ga0157375_10320631 Ga0157375_103206311 317
133 3300025904 Ga0207647_10047976 Ga0207647_100479762 317
134 3300044901 Ga0466960_0014589 Ga0466960_0014589_2335_3336 317
135 3300048903 Ga0496100_0013443 Ga0496100_0013443_1208_2293 317
136 3300048905 Ga0496102_0041310 Ga0496102_0041310_867_1952 317
137 3300048910 Ga0496107_0076406 Ga0496107_0076406_1046_2131 317
138 3300048917 Ga0496114_0099971 Ga0496114_0099971_279_1364 317
139 3300048922 Ga0496119_0046923 Ga0496119_0046923_972_2057 317
140 3300048924 Ga0496121_0048482 Ga0496121_0048482_1497_2582 317
141 3300048920 Ga0496117_0000034 Ga0496117_0000034_287809_288903 318
142 3300053153 Ga0500616_0000152 Ga0500616_0000152_62577_63587 318
143 3300053730 Ga0500645_003576 Ga0500645_003576_5152_6201 318
144 iso_pu_bacteria 2964326757 2964327639 318
145 iso_pu_bacteria 2966921586 2966923098 318
146 3300053080 Ga0500635_0000038 Ga0500635_0000038_1050_2105 319
147 iso_pu_bacteria 2643221616 2644097173 319
148 iso_pu_bacteria 2844841374 2844844493 319
149 iso_pu_bacteria 2884763398 2884763631 319
150 iso_pu_bacteria 2919055335 2919056450 319
151 iso_pu_bacteria 2919523602 2919526444 319
152 iso_pu_bacteria 2928153084 2928155258 319
153 3300001989 JGI24739J22299_10005973 JGI24739J22299_100059735 322
154 3300003758 Ga0055532_1004322 Ga0055532_10043222 322
155 3300003760 Ga0055527_1000004 Ga0055527_1000004162 322
156 3300003762 Ga0055542_1000307 Ga0055542_10003072 322
157 3300003763 Ga0055529_1000008 Ga0055529_1000008415 322
158 3300025228 Ga0209672_100011 Ga0209672_100011164 322
159 3300025229 Ga0209147_100238 Ga0209147_10023821 322
160 3300025242 Ga0209258_103985 Ga0209258_1039852 322
161 3300025254 Ga0209148_1000023 Ga0209148_10000232 322
162 3300025272 Ga0209455_1000023 Ga0209455_10000232 322
163 3300001979 JGI24740J21852_10015492 JGI24740J21852_100154922 323
164 3300001990 JGI24737J22298_10004652 JGI24737J22298_100046524 323
165 3300002067 JGI24735J21928_10011321 JGI24735J21928_100113212 323
166 3300002772 JGI25164J39214_1001076 JGI25164J39214_10010768 323
167 3300003214 JGI25165J46597_1000005 JGI25165J46597_1000005648 323
168 3300003578 Ga0006562J51391_1012772 Ga0006562J51391_101277231 323
169 3300005614 Ga0068856_100247025 Ga0068856_1002470252 323
170 3300013105 Ga0157369_10032701 Ga0157369_100327011 323
171 3300013307 Ga0157372_10607543 Ga0157372_106075431 323
172 3300020082 Ga0206353_10025853 Ga0206353_100258532 323
173 3300025230 Ga0209563_100348 Ga0209563_10034817 323
174 3300025231 Ga0207427_101123 Ga0207427_1011231 323
175 3300025233 Ga0209437_101149 Ga0209437_1011491 323
176 3300025253 Ga0209677_100659 Ga0209677_10065918 323
177 3300025261 Ga0209233_1000001 Ga0209233_10000011 323
178 3300025904 Ga0207647_10017446 Ga0207647_100174464 323
179 3300037418 Ga0395900_0095527 Ga0395900_0095527_279_1346 323
180 3300048905 Ga0496102_0299135 Ga0496102_0299135_161_1231 323
181 3300048916 Ga0496113_0138918 Ga0496113_0138918_821_1894 323
182 3300048920 Ga0496117_0011299 Ga0496117_0011299_5929_6999 323
183 3300048921 Ga0496118_0004617 Ga0496118_0004617_13813_14883 323
184 iso_pu_bacteria 2897561785 2897562015 323
185 iso_pu_bacteria 2995726249 2995726676 323

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01578

Cytochrom_C_asm

Cytochrome C assembly protein

136

347

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
7s9y-assembly1.cif.gz_A helicobacter hepaticus ccsba open conformation 0.8418 72 310
6zmq-assembly1.cif.gz_A cytochrome c heme lyase ccmf 0.691 5 322
6zmq-assembly1.cif.gz_A cytochrome c heme lyase ccmf 0.6306 5 322
7s9y-assembly1.cif.gz_A helicobacter hepaticus ccsba open conformation 0.6132 72 310
7s9z-assembly1.cif.gz_A helicobacter hepaticus ccsba closed conformation 0.5391 76 314
ID Description Score Start End Superfamily
af_A0A1D6NFR3_201_388_1.20.120.1770 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A); 0.5624 177 319 1.20.120.1770
5ek0C01 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Voltage-gated potassium channels. Chain C 0.5608 184 307 1.20.120.350
5ek0B01 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Voltage-gated potassium channels. Chain C 0.5469 189 312 1.20.120.350
5ek0D01 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Voltage-gated potassium channels. Chain C 0.5357 170 308 1.20.120.350
1oedE00 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1;Neurotransmitter-gated ion-channel transmembrane domain 0.5324 168 321 1.20.58.390
ID Description Score Start End GO Terms
AF-A0A0K8QFF8-F1-model_v4 Cytochrome c biogenesis protein CcsA 0.9673 79 323 GO:0005886
GO:0017004
GO:0020037
AF-A0A6H9WVA5-F1-model_v4 C-type cytochrome biogenesis protein CcsB 0.9668 72 323 GO:0005886
GO:0017004
GO:0020037
AF-A0A1R4IAS0-F1-model_v4 deleted 0.9573 72 323
AF-A0A1M3ATV6-F1-model_v4 deleted 0.9561 72 323
AF-A0A3S0TNT0-F1-model_v4 deleted 0.9552 88 323

Feature Viewer

pLDDT pTM Quality
85.91 0.85 High
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Predicted Structure (AlphaFold2)

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