F284457

General Info

Members Datasets Scaffolds Average Seq Length
185 113 370 299

Family's Representative Sequence

Representative Sequence 3300025931|Ga0207644_10035484|Ga0207644_100354842
Length 319
Sequence MCAPPRSSSIELEAPVVTESLWDDKVSVADASAIVARLTDAVIGRLLVLPPGIESRVYEAMRYSALAPGKRLRPLLVVAGARLFGVHRRSALQVAAAIEMVHAYSLIHDDLPAMDDSDLRRGRPTSHKQFDEATAVLAGDGLLTLAFEVLAHPDTHGDPAVRCELVSALAQAAGGAGMVGGQMIDLIAETQALDIGEITRLQRMKTGALIAFSCEAGAILAKAAPEARTALRGYAHDLGLAFQIADDLLDVEGSASETGKPVGADAAAGKATFVSILGVERARAQAELLVDQAVAHLDLFEQRAELLRQIARFVVSRRT

Samples

Sample ID Description Type Environment
1 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
24 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
25 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
26 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
27 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
28 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
29 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
30 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
31 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
32 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
33 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
34 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
35 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
36 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
37 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
38 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
39 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
40 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
41 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
42 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
43 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
63 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
64 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
65 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
66 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
67 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
68 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
69 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
70 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
71 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
72 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
73 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
74 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
75 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
76 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
77 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
78 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
79 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
80 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
81 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
82 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
83 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
84 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
85 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
86 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
87 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
88 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
89 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
90 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
91 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
92 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
93 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
94 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
95 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
96 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
98 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
99 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
100 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
101 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
102 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
103 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
104 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
105 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
106 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
107 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
108 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
109 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
110 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
111 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified
112 2844533157 Inquilinus sp. R-72501 v. 2 Isolate Unclassified
113 8045864390 Aurantimonas endophytica KCTC 52296 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.84
Metatranscriptomes 0.54
Isolates 1.62

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.7
Nodule 0
Rhizoplane 0.54
Rhizosphere 83.24
Stem 0
Stem Tuber 0
Unclassified 0.54

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207644_10035484 3300025931 Bacteria 3495
2 JGI25151J46595_10005213 3300003187 Bacteria 6740
3 Ga0070658_10026137 3300005327 Bacteria 4683
4 Ga0070670_100067153 3300005331 Bacteria 3078
5 Ga0070666_10050552 3300005335 Bacteria 2796
6 Ga0070680_100025317 3300005336 Bacteria 4742
7 Ga0070680_100064353 3300005336 Bacteria 3006
8 Ga0070671_100029383 3300005355 Bacteria 4532
9 Ga0070671_100095003 3300005355 Bacteria 2499
10 Ga0070659_100136566 3300005366 Bacteria 1994
11 Ga0070714_100028575 3300005435 Bacteria 4629
12 Ga0070713_100019024 3300005436 Bacteria 5231
13 Ga0070713_100110437 3300005436 Bacteria 2397
14 Ga0070710_10009657 3300005437 Bacteria 4725
15 Ga0070711_100036148 3300005439 Bacteria 3308
16 Ga0070708_100015035 3300005445 Bacteria 6384
17 Ga0070681_10007266 3300005458 Bacteria 10809
18 Ga0070681_10021288 3300005458 Bacteria 6499
19 Ga0070681_10026000 3300005458 Bacteria 5885
20 Ga0070706_100020129 3300005467 Bacteria 6149
21 Ga0070706_100034499 3300005467 Bacteria 4675
22 Ga0070706_100387553 3300005467 Bacteria 1301
23 Ga0070707_100002961 3300005468 Bacteria 16114
24 Ga0070698_100001079 3300005471 Bacteria 29969
25 Ga0070698_100054581 3300005471 Bacteria 4055
26 Ga0070699_100154424 3300005518 Bacteria 2031
27 Ga0070699_100172186 3300005518 Bacteria 1919
28 Ga0070679_100004831 3300005530 Bacteria 12429
29 Ga0070679_100016404 3300005530 Bacteria 7142
30 Ga0070679_100030918 3300005530 Bacteria 5289
31 Ga0070697_100028057 3300005536 Bacteria 4506
32 Ga0068853_100291996 3300005539 Bacteria 1505
33 Ga0068855_100044455 3300005563 Bacteria 5256
34 Ga0068855_100548191 3300005563 Bacteria 1252
35 Ga0070664_100064304 3300005564 Bacteria 3129
36 Ga0068856_100053047 3300005614 Bacteria 3999
37 Ga0068856_100072519 3300005614 Bacteria 3409
38 Ga0068858_100148222 3300005842 Bacteria 2205
39 Ga0081540_1012666 3300005983 Bacteria 5532
40 Ga0081540_1017215 3300005983 Bacteria 4481
41 Ga0070717_10001092 3300006028 Bacteria 18236
42 Ga0070717_10309303 3300006028 Bacteria 1406
43 Ga0070712_100042168 3300006175 Bacteria 3137
44 Ga0070712_100124239 3300006175 Bacteria 1946
45 Ga0075434_100088901 3300006871 Bacteria 3091
46 Ga0075436_100037949 3300006914 Bacteria 3325
47 Ga0105240_10001003 3300009093 Bacteria 50390
48 Ga0105240_10033218 3300009093 Bacteria 6669
49 Ga0105240_10045661 3300009093 Bacteria 5556
50 Ga0099796_10019933 3300010159 Bacteria 2041
51 Ga0099796_10035963 3300010159 Bacteria 1646
52 Ga0157370_10001895 3300013104 Bacteria 25736
53 Ga0157370_10035557 3300013104 Bacteria 4840
54 Ga0157370_10151699 3300013104 Bacteria 2156
55 Ga0157369_10020128 3300013105 Bacteria 7463
56 Ga0157369_10192333 3300013105 Bacteria 2144
57 Ga0157372_10559483 3300013307 Bacteria 1333
58 Ga0206353_10465445 3300020082 Bacteria 1681
59 Ga0213872_10022653 3300021361 Bacteria 2893
60 Ga0213872_10033358 3300021361 Bacteria 2359
61 Ga0213876_10034146 3300021384 Bacteria 2682
62 Ga0213876_10065554 3300021384 Bacteria 1917
63 Ga0213876_10158277 3300021384 Bacteria 1205
64 Ga0213875_10000124 3300021388 Bacteria 86711
65 Ga0213875_10000988 3300021388 Bacteria 20330
66 Ga0213871_10022220 3300021441 Bacteria 1589
67 Ga0209025_1009425 3300025294 Bacteria 6804
68 Ga0209758_1022819 3300025297 Bacteria 2853
69 Ga0207692_10157565 3300025898 Bacteria 1306
70 Ga0207699_10040423 3300025906 Bacteria 2687
71 Ga0207705_10185942 3300025909 Bacteria 1570
72 Ga0207684_10039593 3300025910 Bacteria 3997
73 Ga0207684_10079309 3300025910 Bacteria 2793
74 Ga0207707_10220191 3300025912 Bacteria 1652
75 Ga0207695_10001461 3300025913 Bacteria 39571
76 Ga0207695_10004619 3300025913 Bacteria 18676
77 Ga0207693_10008250 3300025915 Bacteria 8528
78 Ga0207693_10036220 3300025915 Bacteria 3889
79 Ga0207693_10117012 3300025915 Bacteria 2092
80 Ga0207693_10240756 3300025915 Bacteria 1420
81 Ga0207663_10083979 3300025916 Bacteria 2093
82 Ga0207660_10022149 3300025917 Bacteria 4280
83 Ga0207660_10102854 3300025917 Bacteria 2136
84 Ga0207660_10346034 3300025917 Bacteria 1191
85 Ga0207657_10230940 3300025919 Bacteria 1480
86 Ga0207652_10008093 3300025921 Bacteria 8440
87 Ga0207652_10008558 3300025921 Bacteria 8233
88 Ga0207646_10023120 3300025922 Bacteria 5713
89 Ga0207700_10010444 3300025928 Bacteria 5859
90 Ga0207700_10032028 3300025928 Bacteria 3744
91 Ga0207700_10230862 3300025928 Bacteria 1573
92 Ga0207664_10331519 3300025929 Bacteria 1344
93 Ga0207665_10007968 3300025939 Bacteria 6994
94 Ga0207661_10382026 3300025944 Bacteria 1275
95 Ga0207667_10091070 3300025949 Bacteria 3151
96 Ga0207702_10069364 3300026078 Bacteria 3030
97 Ga0207702_10084901 3300026078 Bacteria 2758
98 Ga0207676_10238255 3300026095 Bacteria 1631
99 Ga0265338_10186563 3300028800 Bacteria 1576
100 Ga0265327_10000882 3300031251 Bacteria 44364
101 Ga0307408_100105260 3300031548 Bacteria 2157
102 Ga0373926_0020260 3300035083 Bacteria 2297
103 Ga0373934_0015031 3300035086 Bacteria 2935
104 Ga0373934_0031097 3300035086 Bacteria 2089
105 Ga0373953_0004469 3300035117 Bacteria 4461
106 Ga0373954_0001376 3300035118 Bacteria 9823
107 Ga0373956_0013189 3300035119 Bacteria 3438
108 Ga0373955_0026900 3300035172 Bacteria 2968
109 Ga0373955_0054537 3300035172 Bacteria 2186
110 Ga0373931_0239762 3300035691 Bacteria 1099
111 Ga0373935_0082545 3300035692 Bacteria 2091
112 Ga0373933_0001300 3300035724 Bacteria 14695
113 Ga0373933_0139448 3300035724 Bacteria 1530
114 Ga0373947_0012725 3300035725 Bacteria 4824
115 Ga0373947_0295609 3300035725 Bacteria 1079
116 Ga0373937_0010089 3300036401 Bacteria 8235
117 Ga0373937_0292650 3300036401 Bacteria 1538
118 Ga0436364_0207585 3300037853 Bacteria 136246
119 Ga0436364_0477878 3300037853 Bacteria 3517
120 Ga0436364_0842641 3300037853 Bacteria 1200
121 Ga0436364_1015306 3300037853 Bacteria 1897
122 Ga0436364_1171513 3300037853 Bacteria 122046
123 Ga0436364_1215387 3300037853 Bacteria 105146
124 Ga0436364_1442654 3300037853 Bacteria 5002
125 Ga0395901_0465589 3300038443 Bacteria 1291
126 Ga0400485_15543 3300038735 Bacteria 1309
127 Ga0400486_05649 3300038742 Bacteria 1447
128 Ga0400486_25345 3300038742 Bacteria 2285
129 Ga0400487_26674 3300039110 Bacteria 2015
130 Ga0436365_0187229 3300039437 Unclassified 1545
131 Ga0436365_0283044 3300039437 Bacteria 3535
132 Ga0436365_0610203 3300039437 Bacteria 1293
133 Ga0436365_0762774 3300039437 Bacteria 11665
134 Ga0436365_1060590 3300039437 Bacteria 1761
135 Ga0436360_1312922 3300039438 Bacteria 1471
136 Ga0436361_0080565 3300039447 Bacteria 4932
137 Ga0436361_0513782 3300039447 Bacteria 1302
138 Ga0436361_1055267 3300039447 Bacteria 2314
139 Ga0436361_1075928 3300039447 Bacteria 1050
140 Ga0436361_1163644 3300039447 Bacteria 4760
141 Ga0436363_0844019 3300039450 Bacteria 5737
142 Ga0436362_0340331 3300039453 Bacteria 1723
143 Ga0436362_0624448 3300039453 Bacteria 5913
144 Ga0436362_0728799 3300039453 Bacteria 1276
145 Ga0436362_0944495 3300039453 Bacteria 1597
146 Ga0436362_0984382 3300039453 Bacteria 2143
147 Ga0436362_1152826 3300039453 Bacteria 1913
148 Ga0436362_1267774 3300039453 Bacteria 1188
149 Ga0466963_0061222 3300044694 Bacteria 2516
150 Ga0466967_0060006 3300045976 Bacteria 3369
151 Ga0466967_0520435 3300045976 Bacteria 1169
152 Ga0466967_0647343 3300045976 Bacteria 1045
153 Ga0495592_0027556 3300046454 Bacteria 4307
154 Ga0495640_0045380 3300046533 Bacteria 3050
155 Ga0495667_0005795 3300046559 Bacteria 8371
156 Ga0495667_0118481 3300046559 Bacteria 1710
157 Ga0495635_0070752 3300046663 Bacteria 2391
158 Ga0495599_0032514 3300046678 Bacteria 3275
159 Ga0495604_0112732 3300047317 Bacteria 1981
160 Ga0495680_0111976 3300047322 Bacteria 2022
161 Ga0496112_0032445 3300048915 Bacteria 5071
162 Ga0501034_0295190 3300049571 Bacteria 1558
163 Ga0501069_0084540 3300049585 Bacteria 1790
164 Ga0501069_0109158 3300049585 Bacteria 1575
165 Ga0501070_0107602 3300049586 Bacteria 2304
166 Ga0501070_0493548 3300049586 Bacteria 984
167 Ga0501073_0058656 3300049589 Bacteria 2690
168 Ga0501080_0377863 3300049742 Bacteria 1277
169 Ga0501081_0150591 3300049743 Bacteria 1671
170 Ga0501083_0017298 3300049744 Bacteria 5026
171 Ga0501044_0026939 3300049823 Bacteria 6082
172 Ga0501044_0071881 3300049823 Bacteria 3518
173 nmdc:mga08x19_61277_c1 3300050514 Bacteria 2438
174 Ga0495601_0008701 3300053077 Bacteria 5991
175 Ga0495601_0008990 3300053077 Bacteria 5898
176 Ga0495595_0197178 3300053084 Bacteria 1002
177 Ga0495619_0033183 3300053085 Bacteria 3352
178 Ga0495619_0049682 3300053085 Bacteria 2766
179 Ga0500592_002168 3300053116 Bacteria 3169
180 Ga0500627_0000028 3300053158 Bacteria 99118
181 Ga0501082_0007552 3300060353 Bacteria 9380
182 Ga0501082_0252615 3300060353 Bacteria 1534
183 2821448056 2821443989 Bacteria 7658172
184 2844535472 2844533157 Bacteria 7517899
185 8045866742 8045864390 Bacteria 5043873
186 Ga0207644_10035484
187 JGI25151J46595_10005213
188 Ga0070658_10026137
189 Ga0070670_100067153
190 Ga0070666_10050552
191 Ga0070680_100025317
192 Ga0070680_100064353
193 Ga0070671_100029383
194 Ga0070671_100095003
195 Ga0070659_100136566
196 Ga0070714_100028575
197 Ga0070713_100019024
198 Ga0070713_100110437
199 Ga0070710_10009657
200 Ga0070711_100036148
201 Ga0070708_100015035
202 Ga0070681_10007266
203 Ga0070681_10021288
204 Ga0070681_10026000
205 Ga0070706_100020129
206 Ga0070706_100034499
207 Ga0070706_100387553
208 Ga0070707_100002961
209 Ga0070698_100001079
210 Ga0070698_100054581
211 Ga0070699_100154424
212 Ga0070699_100172186
213 Ga0070679_100004831
214 Ga0070679_100016404
215 Ga0070679_100030918
216 Ga0070697_100028057
217 Ga0068853_100291996
218 Ga0068855_100044455
219 Ga0068855_100548191
220 Ga0070664_100064304
221 Ga0068856_100053047
222 Ga0068856_100072519
223 Ga0068858_100148222
224 Ga0081540_1012666
225 Ga0081540_1017215
226 Ga0070717_10001092
227 Ga0070717_10309303
228 Ga0070712_100042168
229 Ga0070712_100124239
230 Ga0075434_100088901
231 Ga0075436_100037949
232 Ga0105240_10001003
233 Ga0105240_10033218
234 Ga0105240_10045661
235 Ga0099796_10019933
236 Ga0099796_10035963
237 Ga0157370_10001895
238 Ga0157370_10035557
239 Ga0157370_10151699
240 Ga0157369_10020128
241 Ga0157369_10192333
242 Ga0157372_10559483
243 Ga0206353_10465445
244 Ga0213872_10022653
245 Ga0213872_10033358
246 Ga0213876_10034146
247 Ga0213876_10065554
248 Ga0213876_10158277
249 Ga0213875_10000124
250 Ga0213875_10000988
251 Ga0213871_10022220
252 Ga0209025_1009425
253 Ga0209758_1022819
254 Ga0207692_10157565
255 Ga0207699_10040423
256 Ga0207705_10185942
257 Ga0207684_10039593
258 Ga0207684_10079309
259 Ga0207707_10220191
260 Ga0207695_10001461
261 Ga0207695_10004619
262 Ga0207693_10008250
263 Ga0207693_10036220
264 Ga0207693_10117012
265 Ga0207693_10240756
266 Ga0207663_10083979
267 Ga0207660_10022149
268 Ga0207660_10102854
269 Ga0207660_10346034
270 Ga0207657_10230940
271 Ga0207652_10008093
272 Ga0207652_10008558
273 Ga0207646_10023120
274 Ga0207700_10010444
275 Ga0207700_10032028
276 Ga0207700_10230862
277 Ga0207664_10331519
278 Ga0207665_10007968
279 Ga0207661_10382026
280 Ga0207667_10091070
281 Ga0207702_10069364
282 Ga0207702_10084901
283 Ga0207676_10238255
284 Ga0265338_10186563
285 Ga0265327_10000882
286 Ga0307408_100105260
287 Ga0373926_0020260
288 Ga0373934_0015031
289 Ga0373934_0031097
290 Ga0373953_0004469
291 Ga0373954_0001376
292 Ga0373956_0013189
293 Ga0373955_0026900
294 Ga0373955_0054537
295 Ga0373931_0239762
296 Ga0373935_0082545
297 Ga0373933_0001300
298 Ga0373933_0139448
299 Ga0373947_0012725
300 Ga0373947_0295609
301 Ga0373937_0010089
302 Ga0373937_0292650
303 Ga0436364_0207585
304 Ga0436364_0477878
305 Ga0436364_0842641
306 Ga0436364_1015306
307 Ga0436364_1171513
308 Ga0436364_1215387
309 Ga0436364_1442654
310 Ga0395901_0465589
311 Ga0400485_15543
312 Ga0400486_05649
313 Ga0400486_25345
314 Ga0400487_26674
315 Ga0436365_0187229
316 Ga0436365_0283044
317 Ga0436365_0610203
318 Ga0436365_0762774
319 Ga0436365_1060590
320 Ga0436360_1312922
321 Ga0436361_0080565
322 Ga0436361_0513782
323 Ga0436361_1055267
324 Ga0436361_1075928
325 Ga0436361_1163644
326 Ga0436363_0844019
327 Ga0436362_0340331
328 Ga0436362_0624448
329 Ga0436362_0728799
330 Ga0436362_0944495
331 Ga0436362_0984382
332 Ga0436362_1152826
333 Ga0436362_1267774
334 Ga0466963_0061222
335 Ga0466967_0060006
336 Ga0466967_0520435
337 Ga0466967_0647343
338 Ga0495592_0027556
339 Ga0495640_0045380
340 Ga0495667_0005795
341 Ga0495667_0118481
342 Ga0495635_0070752
343 Ga0495599_0032514
344 Ga0495604_0112732
345 Ga0495680_0111976
346 Ga0496112_0032445
347 Ga0501034_0295190
348 Ga0501069_0084540
349 Ga0501069_0109158
350 Ga0501070_0107602
351 Ga0501070_0493548
352 Ga0501073_0058656
353 Ga0501080_0377863
354 Ga0501081_0150591
355 Ga0501083_0017298
356 Ga0501044_0026939
357 Ga0501044_0071881
358 nmdc:mga08x19_61277_c1
359 Ga0495601_0008701
360 Ga0495601_0008990
361 Ga0495595_0197178
362 Ga0495619_0033183
363 Ga0495619_0049682
364 Ga0500592_002168
365 Ga0500627_0000028
366 Ga0501082_0007552
367 Ga0501082_0252615
368 2821448056
369 2844535472
370 8045866742

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00348

polyprenyl_synt

Polyprenyl synthetase

54

310

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
3m0g-assembly1.cif.gz_A crystal structure of putative farnesyl diphosphate synthase from rhodobacter capsulatus 0.9691 4 293
3m0g-assembly1.cif.gz_B crystal structure of putative farnesyl diphosphate synthase from rhodobacter capsulatus 0.9665 4 295
3lvs-assembly1.cif.gz_A crystal structure of farnesyl diphosphate synthase from rhodobacter capsulatus sb1003 0.9662 5 295
7lbj-assembly1.cif.gz_B crystal structure of octaprenyl diphosphate synthase from stenotrophomonas maltophilia 0.9659 5 297
4llt-assembly1.cif.gz_B crystal structure of a farnesyl diphosphate synthase from roseobacter denitrificans och 114, target efi-509393, with two ipp and calcium bound in active site 0.9654 5 297
ID Description Score Start End Superfamily
3m0gA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9644 4 293 1.10.600.10
4kkmB00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9576 1 292 1.10.600.10
3m0gA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9571 4 293 1.10.600.10
4kkmB00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9509 1 292 1.10.600.10
af_A0A0P0V0B7_118_416_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9465 2 297 1.10.600.10
ID Description Score Start End GO Terms
AF-A0A2N6AVI3-F1-model_v4 Farnesyl-diphosphate synthase 0.9904 39 249 GO:0004659
GO:0008299
AF-A0A149URG7-F1-model_v4 deleted 0.9881 73 297
AF-A0A7M3T799-F1-model_v4 Polyprenyl synthetase family protein 0.9877 39 297 GO:0004659
GO:0008299
AF-A0A7V8KNK5-F1-model_v4 deleted 0.9874 58 297
AF-A0A2E5PE39-F1-model_v4 Farnesyl-diphosphate synthase 0.984 10 297 GO:0004659
GO:0005737
GO:0008299

Map