F282442

General Info

Members Datasets Scaffolds Average Seq Length
184 109 178 536

Family's Representative Sequence

Representative Sequence 3300009093|Ga0105240_10000072|Ga0105240_100000722
Length 553
Sequence MYMKKILRYILFPLLAATLVTSCHKLNEAITSELAPGAFPADTTQYPSVVGPMYVVLRGNYAVEYFFQQTYSTDEGIMPARGGNWFDGAQNQQMHYHSWNADNGYVNGNWTWCSTIIGVANQTLSILKTAAGSDATKRPWIAETRMVRALAYFFLMDNYGNVPIDTAYGDFSQKTNSPRTQVFSFIESEIKAALPDLNTSASASQYGRPNKYMAYALLAKMYLNAEYYTGTARYNDCIAACDNVISSGLYSLQPMNSYFSQFAPTNGPSCKEFIFAIPYDPSMTKTFGTTSWPFRCVNIHARYDIPRSMSKVVPGAGYNFFSLPYTTSAPASTLLSFYKNFSDPGDIRNKQWLTGLQYEHDGVTPIMITTTKSGYDFTYSGSDDTATYTYQLNLTPDIVLRYTKNPFDVGNDEIGWNMGYRNIKFYPDSTSTSRDQNNDVPVFRYSDILLMKAEAILRGGSATLGQDQLSLVNQLRAQRTTTGPWTSVTLDSIYNERSREFAWEGWHRNDMIRFGKYEDAWGFKTDADKNHRIFPIPTSARAKNLALQQNPGY

Samples

Sample ID Description Type Environment
1 2738541278 Niastella sp. CF465 Isolate Unclassified
2 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
3 2818991444 Filimonas endophytica 3197 Isolate Unclassified
4 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
5 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
6 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
7 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
8 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
9 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
10 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
11 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
12 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
13 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
14 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
15 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
16 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
17 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
18 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
19 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
25 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
26 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
27 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
30 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
31 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
32 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
33 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
34 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
35 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
36 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
37 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
38 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
39 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
40 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
41 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
42 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
43 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
45 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
47 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
48 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
61 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
62 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
63 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
64 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
65 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
66 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
67 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
68 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
69 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
70 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
71 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
72 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
73 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
74 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
75 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
76 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
77 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
78 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
79 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
80 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
81 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
82 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
83 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
84 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
85 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
86 3300049523 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J25_B_7_control Metagenome Rhizosphere
87 3300049539 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_B_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
88 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
90 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
91 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
92 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
93 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
94 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
95 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
96 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
97 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
98 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
99 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
100 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
101 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
102 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
103 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
104 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
105 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
106 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
107 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
108 3300059493 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 19R_SW_T1_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
109 3300060346 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 169R_CW_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.02
Metatranscriptomes 1.63
Isolates 4.35

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 21.74
Nodule 0
Rhizoplane 0.54
Rhizosphere 62.5
Stem 0
Stem Tuber 0
Unclassified 15.22

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10000842 3300001979 Bacteria 13554
2 JGI24739J22299_10000688 3300001989 Bacteria 12233
3 JGI25162J39368_1000171 3300002737 Bacteria 71375
4 rootH1_10012349 3300003316 Bacteria 2895
5 rootH1_10056750 3300003316 Unclassified 4445
6 rootH1_10060407 3300003316 Bacteria 4430
7 rootH1_10130483 3300003316 Unclassified 3154
8 rootH1_10135155 3300003316 Unclassified 3322
9 rootH2_10003545 3300003320 Bacteria 12406
10 rootH2_10006838 3300003320 Bacteria 63494
11 rootH2_10012358 3300003320 Bacteria 24901
12 rootH2_10071947 3300003320 Bacteria 6148
13 rootL2_10009557 3300003322 Bacteria 19016
14 rootL2_10041874 3300003322 Unclassified 2900
15 rootH1_10001377 3300003316 Bacteria 5940
16 rootH1_10001377 3300003323 Bacteria 6113
17 rootH1_10001379 3300003316 Bacteria 16163
18 rootH1_10001379 3300003323 Bacteria 9513
19 Ga0055535_1001476 3300003761 Bacteria 11784
20 Ga0055535_1002132 3300003761 Bacteria 7772
21 Ga0055542_1001953 3300003762 Bacteria 8020
22 Ga0055526_1023310 3300003771 Bacteria 2070
23 Ga0070690_100077174 3300005330 Bacteria 2174
24 Ga0068853_100000798 3300005539 Bacteria 21880
25 Ga0070665_100000041 3300005548 Bacteria 297849
26 Ga0068855_100042248 3300005563 Bacteria 5402
27 Ga0068855_100049727 3300005563 Bacteria 4943
28 Ga0068855_100079801 3300005563 Bacteria 3795
29 Ga0068857_100006166 3300005577 Bacteria 10249
30 Ga0068854_100017926 3300005578 Bacteria 4746
31 Ga0068852_100004748 3300005616 Bacteria 9648
32 Ga0068860_100000383 3300005843 Bacteria 57999
33 Ga0068860_100016643 3300005843 Bacteria 7173
34 Ga0097621_100008855 3300006237 Bacteria 7276
35 Ga0105240_10000033 3300009093 Bacteria 279600
36 Ga0105240_10000072 3300009093 Bacteria 201388
37 Ga0105240_10000224 3300009093 Bacteria 113175
38 Ga0105240_10000396 3300009093 Bacteria 81252
39 Ga0105240_10001025 3300009093 Bacteria 49629
40 Ga0105240_10015668 3300009093 Bacteria 10294
41 Ga0105240_10025972 3300009093 Bacteria 7692
42 Ga0105240_10036358 3300009093 Bacteria 6337
43 Ga0105240_10082489 3300009093 Unclassified 3948
44 Ga0105240_10156884 3300009093 Bacteria 2706
45 Ga0105241_10000493 3300009174 Bacteria 29814
46 Ga0105241_10157615 3300009174 Bacteria 1863
47 Ga0105237_10000056 3300009545 Bacteria 151313
48 Ga0105237_10003801 3300009545 Bacteria 17746
49 Ga0105237_10004541 3300009545 Bacteria 16041
50 Ga0105237_10027859 3300009545 Bacteria 5757
51 Ga0105237_10038783 3300009545 Bacteria 4810
52 Ga0105237_10055355 3300009545 Bacteria 3973
53 Ga0105237_10070106 3300009545 Bacteria 3501
54 Ga0105238_10000247 3300009551 Bacteria 60300
55 Ga0105239_10000078 3300010375 Bacteria 135743
56 Ga0105239_10000446 3300010375 Bacteria 60289
57 Ga0105239_10000880 3300010375 Bacteria 42576
58 Ga0105239_10001141 3300010375 Bacteria 36571
59 Ga0105239_10003640 3300010375 Bacteria 18838
60 Ga0105239_10012015 3300010375 Bacteria 9656
61 Ga0105239_10026403 3300010375 Bacteria 6391
62 Ga0157371_10020996 3300013102 Bacteria 4801
63 Ga0157370_10107366 3300013104 Bacteria 2611
64 Ga0157374_10000007 3300013296 Bacteria 595643
65 Ga0163162_10002474 3300013306 Bacteria 17453
66 Ga0157372_10000626 3300013307 Bacteria 38597
67 Ga0157372_10009568 3300013307 Bacteria 10302
68 Ga0157372_10047325 3300013307 Bacteria 4779
69 Ga0157372_10070634 3300013307 Bacteria 3929
70 Ga0157372_10078060 3300013307 Bacteria 3741
71 Ga0157376_10024084 3300014969 Unclassified 4774
72 Ga0182005_1000071 3300015265 Bacteria 84771
73 Ga0163161_10000155 3300017792 Bacteria 63345
74 Ga0163161_10029465 3300017792 Bacteria 3903
75 Ga0209436_101669 3300025208 Bacteria 7375
76 Ga0209437_100134 3300025233 Bacteria 178305
77 Ga0209258_100156 3300025242 Bacteria 156926
78 Ga0209258_100193 3300025242 Bacteria 124682
79 Ga0209646_1001136 3300025246 Bacteria 7812
80 Ga0209148_1000167 3300025254 Bacteria 135407
81 Ga0209148_1000378 3300025254 Bacteria 54132
82 Ga0209564_1001302 3300025295 Bacteria 26894
83 Ga0209758_1000465 3300025297 Bacteria 67058
84 Ga0207647_10012039 3300025904 Bacteria 6037
85 Ga0207654_10000775 3300025911 Bacteria 17563
86 Ga0207695_10000023 3300025913 Bacteria 657903
87 Ga0207695_10000031 3300025913 Bacteria 526801
88 Ga0207695_10000067 3300025913 Bacteria 330915
89 Ga0207695_10000954 3300025913 Bacteria 51465
90 Ga0207695_10009152 3300025913 Bacteria 12291
91 Ga0207695_10016636 3300025913 Bacteria 8597
92 Ga0207695_10112259 3300025913 Unclassified 2704
93 Ga0207695_10116891 3300025913 Bacteria 2640
94 Ga0207671_10000495 3300025914 Bacteria 53496
95 Ga0207671_10002088 3300025914 Bacteria 21861
96 Ga0207671_10004195 3300025914 Bacteria 13903
97 Ga0207671_10006479 3300025914 Bacteria 10419
98 Ga0207671_10023605 3300025914 Bacteria 4636
99 Ga0207671_10031330 3300025914 Bacteria 3962
100 Ga0207694_10003736 3300025924 Bacteria 12063
101 Ga0207694_10011872 3300025924 Bacteria 6568
102 Ga0207694_10134829 3300025924 Bacteria 1982
103 Ga0207667_10134288 3300025949 Bacteria 2548
104 Ga0207639_10044043 3300026041 Bacteria 3354
105 Ga0207641_10013643 3300026088 Bacteria 6665
106 Ga0207674_10005115 3300026116 Bacteria 15654
107 Ga0207698_10004129 3300026142 Bacteria 8823
108 Ga0268266_10000049 3300028379 Bacteria 307763
109 Ga0268264_10000041 3300028381 Bacteria 372501
110 Ga0307511_10000139 3300030521 Bacteria 67385
111 Ga0307511_10001345 3300030521 Bacteria 26061
112 Ga0265327_10006447 3300031251 Bacteria 9378
113 Ga0307513_10011657 3300031456 Bacteria 10907
114 Ga0307509_10014065 3300031507 Bacteria 9436
115 Ga0307408_100000711 3300031548 Bacteria 27086
116 Ga0307408_100007745 3300031548 Bacteria 7104
117 Ga0307414_10021556 3300032004 Bacteria 4046
118 Ga0307510_10008289 3300033180 Bacteria 12386
119 Ga0466969_0000611 3300044656 Bacteria 19296
120 Ga0466972_0000032 3300044658 Bacteria 159445
121 Ga0466972_0003827 3300044658 Bacteria 7486
122 Ga0453683_0000005 3300044673 Bacteria 741657
123 Ga0466966_0000124 3300044684 Bacteria 48900
124 Ga0466961_0007177 3300044693 Bacteria 7089
125 Ga0453684_0000170 3300044712 Bacteria 289718
126 Ga0466968_0011427 3300044735 Bacteria 3458
127 Ga0466959_0000012 3300045049 Bacteria 168961
128 Ga0495606_0000130 3300046507 Bacteria 127805
129 Ga0495606_0014437 3300046507 Bacteria 6164
130 Ga0495610_0002033 3300046512 Bacteria 17292
131 Ga0495648_0001158 3300046524 Bacteria 26658
132 Ga0495633_0000085 3300046558 Bacteria 124821
133 Ga0495633_0013612 3300046558 Bacteria 4280
134 Ga0495611_0000056 3300046648 Bacteria 80473
135 Ga0495611_0025172 3300046648 Bacteria 2592
136 Ga0495625_0024450 3300046660 Bacteria 4596
137 Ga0495625_0075421 3300046660 Bacteria 2360
138 Ga0495649_0094923 3300046694 Bacteria 1588
139 Ga0495687_000001 3300047443 Bacteria 1215582
140 Ga0495686_0000106 3300047472 Bacteria 175852
141 Ga0496109_0203426 3300048912 Bacteria 1862
142 Ga0496121_0000010 3300048924 Bacteria 793488
143 Ga0501300_003239 3300049523 Bacteria 2428
144 Ga0501323_000062 3300049539 Bacteria 5327
145 Ga0501047_0017915 3300049581 Bacteria 6788
146 Ga0501249_000005 3300049679 Bacteria 225972
147 Ga0501257_000852 3300049686 Bacteria 6124
148 Ga0501225_0002549 3300049705 Unclassified 5623
149 Ga0501044_0056555 3300049823 Bacteria 4028
150 Ga0500578_0000001 3300053086 Bacteria 317120
151 Ga0500644_0000318 3300053088 Bacteria 25152
152 Ga0500644_0000955 3300053088 Bacteria 9081
153 Ga0500646_0002987 3300053090 Bacteria 4340
154 Ga0500646_0003184 3300053090 Bacteria 4210
155 Ga0500646_0009639 3300053090 Bacteria 2471
156 Ga0500583_0000100 3300053092 Bacteria 47289
157 Ga0500583_0000606 3300053092 Bacteria 10723
158 Ga0500583_0091686 3300053092 Bacteria 1479
159 Ga0500641_0000013 3300053096 Bacteria 156919
160 Ga0500569_000086 3300053109 Bacteria 14960
161 Ga0500569_006870 3300053109 Bacteria 2523
162 Ga0500607_035007 3300053121 Bacteria 2748
163 Ga0500658_0002510 3300053134 Bacteria 7108
164 Ga0500658_0004803 3300053134 Bacteria 5038
165 Ga0500561_0004832 3300053137 Bacteria 2459
166 Ga0500568_0027816 3300053139 Bacteria 2362
167 Ga0500577_0001379 3300053142 Bacteria 6205
168 Ga0500577_0007831 3300053142 Bacteria 3013
169 Ga0500588_0000465 3300053146 Bacteria 6411
170 Ga0500588_0015280 3300053146 Unclassified 1963
171 Ga0500622_0000372 3300053156 Bacteria 43235
172 Ga0500622_0005414 3300053156 Bacteria 7675
173 Ga0500622_0006639 3300053156 Bacteria 6668
174 Ga0500622_0019303 3300053156 Bacteria 3621
175 Ga0500633_0003650 3300053160 Bacteria 3398
176 Ga0500636_0017845 3300053177 Bacteria 4194
177 Ga0587077_000640 3300059493 Bacteria 3187
178 Ga0587111_0000821 3300060346 Bacteria 3323

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046660 Ga0495625_0024450 Ga0495625_0024450_36_1379 433
2 3300053092 Ga0500583_0091686 Ga0500583_0091686_71_1450 448
3 3300049523 Ga0501300_003239 Ga0501300_003239_1048_2406 452
4 3300048912 Ga0496109_0203426 Ga0496109_0203426_67_1491 461
5 3300046694 Ga0495649_0094923 Ga0495649_0094923_126_1577 472
6 3300044684 Ga0466966_0000124 Ga0466966_0000124_28046_29668 495
7 3300045049 Ga0466959_0000012 Ga0466959_0000012_40960_42582 495
8 3300005330 Ga0070690_100077174 Ga0070690_1000771742 501
9 3300013307 Ga0157372_10078060 Ga0157372_100780602 501
10 3300031548 Ga0307408_100000711 Ga0307408_10000071113 501
11 3300044656 Ga0466969_0000611 Ga0466969_0000611_9811_11460 504
12 3300044735 Ga0466968_0011427 Ga0466968_0011427_1867_3414 506
13 3300053092 Ga0500583_0000606 Ga0500583_0000606_1603_3252 514
14 3300003316 rootH1_10060407 rootH1_100604072 515
15 3300053156 Ga0500622_0005414 Ga0500622_0005414_5842_7491 516
16 3300053109 Ga0500569_000086 Ga0500569_000086_6426_7991 517
17 3300053121 Ga0500607_035007 Ga0500607_035007_1172_2737 517
18 3300003322 rootL2_10009557 rootL2_1000955717 518
19 iso_pu_bacteria 2929154850 2929156499 520
20 3300005563 Ga0068855_100049727 Ga0068855_1000497272 522
21 3300005577 Ga0068857_100006166 Ga0068857_1000061666 522
22 3300005616 Ga0068852_100004748 Ga0068852_1000047483 522
23 3300009093 Ga0105240_10036358 Ga0105240_100363582 522
24 3300013104 Ga0157370_10107366 Ga0157370_101073662 522
25 3300013307 Ga0157372_10009568 Ga0157372_100095682 522
26 3300025904 Ga0207647_10012039 Ga0207647_100120392 522
27 3300025924 Ga0207694_10011872 Ga0207694_100118722 522
28 3300026041 Ga0207639_10044043 Ga0207639_100440432 522
29 3300026116 Ga0207674_10005115 Ga0207674_100051157 522
30 3300026142 Ga0207698_10004129 Ga0207698_100041295 522
31 3300009093 Ga0105240_10082489 Ga0105240_100824892 523
32 3300009545 Ga0105237_10004541 Ga0105237_100045412 523
33 3300009545 Ga0105237_10027859 Ga0105237_100278592 523
34 3300010375 Ga0105239_10003640 Ga0105239_1000364011 523
35 3300013306 Ga0163162_10002474 Ga0163162_100024744 523
36 3300025911 Ga0207654_10000775 Ga0207654_1000077510 523
37 3300025913 Ga0207695_10009152 Ga0207695_100091524 523
38 3300025913 Ga0207695_10112259 Ga0207695_101122592 523
39 3300025914 Ga0207671_10002088 Ga0207671_1000208810 523
40 3300025914 Ga0207671_10023605 Ga0207671_100236052 523
41 3300049705 Ga0501225_0002549 Ga0501225_0002549_26_1597 523
42 3300009093 Ga0105240_10000033 Ga0105240_1000003343 524
43 3300025913 Ga0207695_10000023 Ga0207695_10000023348 524
44 3300053092 Ga0500583_0000100 Ga0500583_0000100_27939_29588 524
45 3300025246 Ga0209646_1001136 Ga0209646_10011362 525
46 3300002737 JGI25162J39368_1000171 JGI25162J39368_100017128 526
47 3300003316 rootH1_10012349 rootH1_100123492 526
48 3300003322 rootL2_10041874 rootL2_100418742 526
49 3300005563 Ga0068855_100042248 Ga0068855_1000422482 526
50 3300005578 Ga0068854_100017926 Ga0068854_1000179262 526
51 3300009093 Ga0105240_10000396 Ga0105240_1000039648 526
52 3300009545 Ga0105237_10055355 Ga0105237_100553552 526
53 3300010375 Ga0105239_10000446 Ga0105239_100004466 526
54 3300010375 Ga0105239_10026403 Ga0105239_100264032 526
55 3300017792 Ga0163161_10029465 Ga0163161_100294653 526
56 3300025233 Ga0209437_100134 Ga0209437_100134137 526
57 3300025913 Ga0207695_10000031 Ga0207695_10000031219 526
58 3300025914 Ga0207671_10004195 Ga0207671_100041955 526
59 3300025914 Ga0207671_10031330 Ga0207671_100313302 526
60 3300025949 Ga0207667_10134288 Ga0207667_101342882 526
61 3300046507 Ga0495606_0000130 Ga0495606_0000130_56629_58209 526
62 3300046512 Ga0495610_0002033 Ga0495610_0002033_11134_12714 526
63 3300046558 Ga0495633_0013612 Ga0495633_0013612_85_1665 526
64 3300047472 Ga0495686_0000106 Ga0495686_0000106_40546_42126 526
65 3300031548 Ga0307408_100007745 Ga0307408_1000077452 527
66 3300049539 Ga0501323_000062 Ga0501323_000062_3094_4680 527
67 3300049686 Ga0501257_000852 Ga0501257_000852_2818_4404 527
68 3300010375 Ga0105239_10001141 Ga0105239_100011415 528
69 3300013296 Ga0157374_10000007 Ga0157374_10000007391 528
70 3300014969 Ga0157376_10024084 Ga0157376_100240842 528
71 3300003316 rootH1_10056750 rootH1_100567502 529
72 3300003761 Ga0055535_1001476 Ga0055535_10014765 530
73 3300003762 Ga0055542_1001953 Ga0055542_10019534 530
74 3300025242 Ga0209258_100193 Ga0209258_10019341 530
75 3300025254 Ga0209148_1000167 Ga0209148_100016775 530
76 3300046558 Ga0495633_0000085 Ga0495633_0000085_50255_51850 530
77 3300053088 Ga0500644_0000955 Ga0500644_0000955_6259_7863 530
78 3300053090 Ga0500646_0002987 Ga0500646_0002987_814_2418 530
79 3300053134 Ga0500658_0002510 Ga0500658_0002510_4218_5822 530
80 3300053142 Ga0500577_0007831 Ga0500577_0007831_370_1974 530
81 3300053160 Ga0500633_0003650 Ga0500633_0003650_209_1813 530
82 3300053177 Ga0500636_0017845 Ga0500636_0017845_1011_2615 530
83 iso_pu_bacteria 2818991442 2819571849 532
84 iso_pu_bacteria 2818991444 2819590353 532
85 iso_pu_bacteria 2821136567 2821141902 532
86 iso_pu_bacteria 2904467357 2904469684 532
87 3300032004 Ga0307414_10021556 Ga0307414_100215562 533
88 3300049581 Ga0501047_0017915 Ga0501047_0017915_3724_5340 533
89 3300049823 Ga0501044_0056555 Ga0501044_0056555_2315_3931 533
90 iso_pu_bacteria 2929150217 2929152365 533
91 3300026088 Ga0207641_10013643 Ga0207641_100136433 534
92 iso_pu_bacteria 2738541278 2738728811 534
93 3300003320 rootH2_10003545 rootH2_100035451 535
94 3300003323 rootH1_10001377 rootH1_100013773 535
95 3300003323 rootH1_10001379 rootH1_100013792 535
96 3300015265 Ga0182005_1000071 Ga0182005_10000712 535
97 3300025208 Ga0209436_101669 Ga0209436_1016693 535
98 3300030521 Ga0307511_10000139 Ga0307511_1000013922 535
99 3300031507 Ga0307509_10014065 Ga0307509_100140655 535
100 3300048924 Ga0496121_0000010 Ga0496121_0000010_84084_85724 535
101 3300053146 Ga0500588_0000465 Ga0500588_0000465_3704_5353 535
102 iso_pu_bacteria 2929921140 2929924083 535
103 3300003316 rootH1_10135155 rootH1_101351551 536
104 3300006237 Ga0097621_100008855 Ga0097621_1000088553 536
105 3300009174 Ga0105241_10157615 Ga0105241_101576152 536
106 3300013307 Ga0157372_10047325 Ga0157372_100473253 536
107 3300025924 Ga0207694_10134829 Ga0207694_101348292 536
108 3300031251 Ga0265327_10006447 Ga0265327_100064472 536
109 3300053156 Ga0500622_0019303 Ga0500622_0019303_1164_2774 536
110 3300003316 rootH1_10130483 rootH1_101304832 537
111 3300003320 rootH2_10012358 rootH2_100123582 537
112 3300003761 Ga0055535_1002132 Ga0055535_10021322 537
113 3300005548 Ga0070665_100000041 Ga0070665_100000041208 537
114 3300005563 Ga0068855_100079801 Ga0068855_1000798014 537
115 3300005843 Ga0068860_100000383 Ga0068860_10000038310 537
116 3300005843 Ga0068860_100016643 Ga0068860_1000166432 537
117 3300009093 Ga0105240_10000224 Ga0105240_1000022476 537
118 3300009093 Ga0105240_10015668 Ga0105240_100156682 537
119 3300009093 Ga0105240_10156884 Ga0105240_101568842 537
120 3300009174 Ga0105241_10000493 Ga0105241_1000049322 537
121 3300009545 Ga0105237_10000056 Ga0105237_100000569 537
122 3300009545 Ga0105237_10003801 Ga0105237_100038016 537
123 3300009545 Ga0105237_10038783 Ga0105237_100387832 537
124 3300009545 Ga0105237_10070106 Ga0105237_100701062 537
125 3300009551 Ga0105238_10000247 Ga0105238_1000024739 537
126 3300010375 Ga0105239_10000078 Ga0105239_1000007822 537
127 3300010375 Ga0105239_10000880 Ga0105239_1000088011 537
128 3300010375 Ga0105239_10012015 Ga0105239_100120152 537
129 3300013307 Ga0157372_10000626 Ga0157372_100006265 537
130 3300013307 Ga0157372_10070634 Ga0157372_100706342 537
131 3300017792 Ga0163161_10000155 Ga0163161_1000015515 537
132 3300025242 Ga0209258_100156 Ga0209258_100156134 537
133 3300025254 Ga0209148_1000378 Ga0209148_100037838 537
134 3300025913 Ga0207695_10116891 Ga0207695_101168912 537
135 3300025914 Ga0207671_10000495 Ga0207671_100004959 537
136 3300025914 Ga0207671_10006479 Ga0207671_100064794 537
137 3300025924 Ga0207694_10003736 Ga0207694_100037364 537
138 3300028379 Ga0268266_10000049 Ga0268266_10000049250 537
139 3300028381 Ga0268264_10000041 Ga0268264_1000004193 537
140 3300030521 Ga0307511_10001345 Ga0307511_1000134518 537
141 3300044658 Ga0466972_0000032 Ga0466972_0000032_79548_81197 537
142 3300044658 Ga0466972_0003827 Ga0466972_0003827_75_1718 537
143 3300044673 Ga0453683_0000005 Ga0453683_0000005_193655_195268 537
144 3300044693 Ga0466961_0007177 Ga0466961_0007177_2731_4368 537
145 3300044712 Ga0453684_0000170 Ga0453684_0000170_64372_65988 537
146 3300046524 Ga0495648_0001158 Ga0495648_0001158_2867_4525 537
147 3300046648 Ga0495611_0000056 Ga0495611_0000056_22954_24597 537
148 3300046648 Ga0495611_0025172 Ga0495611_0025172_14_1672 537
149 3300046660 Ga0495625_0075421 Ga0495625_0075421_65_1711 537
150 3300047443 Ga0495687_000001 Ga0495687_000001_107838_109484 537
151 3300049679 Ga0501249_000005 Ga0501249_000005_72374_73996 537
152 3300053086 Ga0500578_0000001 Ga0500578_0000001_226503_228152 537
153 3300053088 Ga0500644_0000318 Ga0500644_0000318_290_1906 537
154 3300053090 Ga0500646_0003184 Ga0500646_0003184_2089_3738 537
155 3300053090 Ga0500646_0009639 Ga0500646_0009639_355_1971 537
156 3300053096 Ga0500641_0000013 Ga0500641_0000013_93805_95418 537
157 3300053109 Ga0500569_006870 Ga0500569_006870_123_1739 537
158 3300053134 Ga0500658_0004803 Ga0500658_0004803_1055_2671 537
159 3300053137 Ga0500561_0004832 Ga0500561_0004832_363_1979 537
160 3300053139 Ga0500568_0027816 Ga0500568_0027816_683_2326 537
161 3300053142 Ga0500577_0001379 Ga0500577_0001379_3064_4680 537
162 3300053146 Ga0500588_0015280 Ga0500588_0015280_117_1760 537
163 3300053156 Ga0500622_0000372 Ga0500622_0000372_19837_21453 537
164 3300053156 Ga0500622_0006639 Ga0500622_0006639_525_2183 537
165 3300059493 Ga0587077_000640 Ga0587077_000640_1394_3043 537
166 3300001989 JGI24739J22299_10000688 JGI24739J22299_100006886 538
167 3300003320 rootH2_10006838 rootH2_1000683833 538
168 3300003320 rootH2_10071947 rootH2_100719471 538
169 3300003771 Ga0055526_1023310 Ga0055526_10233102 538
170 3300005539 Ga0068853_100000798 Ga0068853_10000079813 538
171 3300009093 Ga0105240_10000072 Ga0105240_100000722 538
172 3300009093 Ga0105240_10001025 Ga0105240_100010252 538
173 3300009093 Ga0105240_10025972 Ga0105240_100259723 538
174 3300013102 Ga0157371_10020996 Ga0157371_100209962 538
175 3300025295 Ga0209564_1001302 Ga0209564_100130219 538
176 3300025297 Ga0209758_1000465 Ga0209758_100046515 538
177 3300025913 Ga0207695_10000067 Ga0207695_1000006743 538
178 3300025913 Ga0207695_10000954 Ga0207695_1000095446 538
179 3300025913 Ga0207695_10016636 Ga0207695_100166362 538
180 3300031456 Ga0307513_10011657 Ga0307513_100116576 538
181 3300033180 Ga0307510_10008289 Ga0307510_100082893 538
182 3300046507 Ga0495606_0014437 Ga0495606_0014437_1076_2731 538
183 3300060346 Ga0587111_0000821 Ga0587111_0000821_549_2168 538
184 3300001979 JGI24740J21852_10000842 JGI24740J21852_100008422 539

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF14322

SusD-like_3

Starch-binding associating with outer membrane

53

223

0.88

PF07980

SusD_RagB

SusD family

216

553

0.72

Structural Annotation

Top 5 Hits

ID Description Score Start End
6gcz-assembly1.cif.gz_A laminarin binding susd-like protein 0.8109 38 539
6gcz-assembly1.cif.gz_A laminarin binding susd-like protein 0.8092 38 539
7kv1-assembly1.cif.gz_A surface glycan-binding protein a from bacteroides uniformis 0.8088 42 536
7kv1-assembly1.cif.gz_A surface glycan-binding protein a from bacteroides uniformis 0.7988 42 536
7kv1-assembly2.cif.gz_B surface glycan-binding protein a from bacteroides uniformis 0.7982 42 536
ID Description Score Start End Superfamily
3jysA01 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.8102 38 197 1.25.40.390
3jq1B01 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.8062 39 539 1.25.40.390
3jq1B01 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.796 39 539 1.25.40.390
3otnB00 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.7681 38 539 1.25.40.390
3otnB00 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.7666 38 539 1.25.40.390
ID Description Score Start End GO Terms
AF-A0A1H4DSI8-F1-model_v4 Starch-binding associating with outer membrane 0.9556 107 539 GO:0009279
AF-A0A1Q6A0D2-F1-model_v4 RagB/SusD domain-containing protein 0.9528 17 539 GO:0009279
AF-A0A6I0E2E0-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9516 62 539 GO:0009279
AF-A0A6I0E2E0-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9457 62 539 GO:0009279
AF-A0A1Q6A0D2-F1-model_v4 RagB/SusD domain-containing protein 0.9402 17 539 GO:0009279

Feature Viewer

pLDDT pTM Quality
89.3 0.89 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map