F282247
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 184 | 140 | 173 | 373 |
Family's Representative Sequence
| Representative Sequence | 3300005614|Ga0068856_100192924|Ga0068856_1001929242 |
| Length | 386 |
| Sequence | VKPVGMSEVSPDPATVVDRAAAERPIPKPGILDIHAYVPGKAKVEGVAEPVKLSANENPLGSSPKAREAYAEAARQLHVYPDPRANIVRAAIAERFRLEPERLVFGCGSDEVFQLLNQVFLEPGDNMVQGEFGFAAFGIGAKAAGGEVKLAKEPGYRIDVDELLATVDERTRLVFLANPGNPTGTWIPFSEVRRLHEALPASVVLVLDGAYGEFALDPQFSDGLELARTSSNIVVTHTFSKLHGLAGLRVGWGYAPVEIAAAVERIRLPFNVSVPAQVAAVAALGDEDFQRASIALVEQWRPWLTQQLGGAGLEVVGPSATNFLLVGFPTRPGKTAAEAEAFLASRGLLVRGVGLYGLPNHLRVTIGLEAHNRALAEALVDFMRAP |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2511231221 | Azospirillum lipoferum 4B | Isolate | Rhizosphere |
| 2 | 2597490356 | Azospirillum brasilense sp7 | Isolate | Unclassified |
| 3 | 2643221541 | Sphingomonas sp. Root50 | Isolate | Unclassified |
| 4 | 2643221606 | Sphingomonas sp. Root720 | Isolate | Unclassified |
| 5 | 2643221671 | Sphingomonas sp. Root1294 | Isolate | Unclassified |
| 6 | 2739367756 | Asticcacaulis sp. CF398 | Isolate | Unclassified |
| 7 | 2846952575 | Azospirillum brasilense sp7 | Isolate | Unclassified |
| 8 | 2848858292 | Azospirillum brasilense Az39 | Isolate | Unclassified |
| 9 | 2897803580 | Azospirillum doebereinerae GSF71 | Isolate | Unclassified |
| 10 | 2928531327 | Caulobacter sp. 1776 | Isolate | Rhizosphere |
| 11 | 3300003215 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF | Metagenome | Endosphere |
| 12 | 3300003322 | Sugarcane root Sample L2 | Metagenome | Unclassified |
| 13 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 14 | 3300003791 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 | Metagenome | Endosphere |
| 15 | 3300003794 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 | Metagenome | Endosphere |
| 16 | 3300005262 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) | Metagenome | Endosphere |
| 17 | 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Metagenome | Rhizosphere |
| 18 | 3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Metagenome | Rhizosphere |
| 19 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 20 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 21 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 22 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 23 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 24 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 25 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 26 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 27 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 28 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 29 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 30 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 31 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 32 | 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Metagenome | Rhizosphere |
| 33 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 34 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 35 | 3300006048 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 | Metagenome | Endosphere |
| 36 | 3300006051 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Metagenome | Endosphere |
| 37 | 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 38 | 3300006353 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 | Metagenome | Endosphere |
| 39 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 40 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 41 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 42 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 43 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 44 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 45 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 46 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 47 | 3300015684 | Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.2_F02 | Metagenome | Unclassified |
| 48 | 3300021384 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 | Metagenome | Unclassified |
| 49 | 3300025297 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) | Metagenome | Endosphere |
| 50 | 3300025298 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 51 | 3300025304 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 52 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 53 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 54 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 55 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 57 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300025938 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 72 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 75 | 3300027866 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) | Metagenome | Endosphere |
| 76 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 77 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 78 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 79 | 3300028786 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM | Metagenome | Unclassified |
| 80 | 3300031456 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM | Metagenome | Unclassified |
| 81 | 3300031730 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM | Metagenome | Unclassified |
| 82 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 83 | 3300033180 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM | Metagenome | Unclassified |
| 84 | 3300035113 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 | Metagenome | Rhizosphere |
| 85 | 3300035695 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 | Metagenome | Rhizosphere |
| 86 | 3300037068 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 87 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 88 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 89 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 90 | 3300037853 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 | Metagenome | Unclassified |
| 91 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 92 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 93 | 3300044656 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R | Metagenome | Rhizosphere |
| 94 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 95 | 3300044693 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R | Metagenome | Rhizosphere |
| 96 | 3300044719 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R | Metagenome | Rhizosphere |
| 97 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 98 | 3300046474 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere | Metagenome | Rhizosphere |
| 99 | 3300046506 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere | Metagenome | Rhizosphere |
| 100 | 3300046528 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere | Metagenome | Rhizosphere |
| 101 | 3300046542 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere | Metagenome | Rhizosphere |
| 102 | 3300046684 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere | Metagenome | Rhizosphere |
| 103 | 3300047320 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere | Metagenome | Rhizosphere |
| 104 | 3300047443 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere | Metagenome | Rhizosphere |
| 105 | 3300047472 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere | Metagenome | Rhizosphere |
| 106 | 3300047673 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere | Metagenome | Rhizosphere |
| 107 | 3300048903 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled | Metagenome | Rhizoplane |
| 108 | 3300048905 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 | Metagenome | Rhizoplane |
| 109 | 3300048912 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled | Metagenome | Rhizoplane |
| 110 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 111 | 3300048915 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 | Metagenome | Rhizoplane |
| 112 | 3300048916 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 | Metagenome | Rhizoplane |
| 113 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 114 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 115 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 116 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 117 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 118 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 119 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 120 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 121 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 122 | 3300050490 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation | Metagenome | Endosphere |
| 123 | 3300050491 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation | Metagenome | Endosphere |
| 124 | 3300050494 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation | Metagenome | Endosphere |
| 125 | 3300050495 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation | Metagenome | Endosphere |
| 126 | 3300053080 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere | Metagenome | Endosphere |
| 127 | 3300053087 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere | Metagenome | Endosphere |
| 128 | 3300053093 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere | Metagenome | Endosphere |
| 129 | 3300053094 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere | Metagenome | Endosphere |
| 130 | 3300053096 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere | Metagenome | Endosphere |
| 131 | 3300053103 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere | Metagenome | Endosphere |
| 132 | 3300053109 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere | Metagenome | Endosphere |
| 133 | 3300053119 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere | Metagenome | Endosphere |
| 134 | 3300053122 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere | Metagenome | Endosphere |
| 135 | 3300053148 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere | Metagenome | Endosphere |
| 136 | 3300053178 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere | Metagenome | Endosphere |
| 137 | 3300053729 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 endosphere | Metagenome | Endosphere |
| 138 | 3300053730 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere | Metagenome | Endosphere |
| 139 | 3300053735 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere | Metagenome | Endosphere |
| 140 | 8054002106 | Azospirillum lipoferum 59b | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 94.02 |
| Metatranscriptomes | 0 |
| Isolates | 5.98 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 17.39 |
| Nodule | 0 |
| Rhizoplane | 4.35 |
| Rhizosphere | 64.13 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 14.13 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | JGI25153J46596_10033039 | 3300003215 | Bacteria | 1714 |
| 2 | rootL2_10068482 | 3300003322 | Bacteria | 4262 |
| 3 | rootH1_10079513 | 3300003323 | Bacteria | 6725 |
| 4 | Ga0055530_10000633 | 3300003791 | Bacteria | 30375 |
| 5 | Ga0055531_10002921 | 3300003794 | Bacteria | 11126 |
| 6 | Ga0055531_10009202 | 3300003794 | Bacteria | 5085 |
| 7 | Ga0065165_1001018 | 3300005262 | Bacteria | 34062 |
| 8 | Ga0070670_100213992 | 3300005331 | Bacteria | 1676 |
| 9 | Ga0070680_100008711 | 3300005336 | Bacteria | 7777 |
| 10 | Ga0070680_100021856 | 3300005336 | Bacteria | 5089 |
| 11 | Ga0070668_100067052 | 3300005347 | Bacteria | 2787 |
| 12 | Ga0070659_100000145 | 3300005366 | Bacteria | 54825 |
| 13 | Ga0070659_100006721 | 3300005366 | Bacteria | 8315 |
| 14 | Ga0070667_100021892 | 3300005367 | Bacteria | 5304 |
| 15 | Ga0070662_100076885 | 3300005457 | Bacteria | 2476 |
| 16 | Ga0070681_10006793 | 3300005458 | Bacteria | 11138 |
| 17 | Ga0070679_100008875 | 3300005530 | Bacteria | 9490 |
| 18 | Ga0068853_100039443 | 3300005539 | Bacteria | 4027 |
| 19 | Ga0068853_100156087 | 3300005539 | Bacteria | 2057 |
| 20 | Ga0070665_100000194 | 3300005548 | Bacteria | 107719 |
| 21 | Ga0068855_100031325 | 3300005563 | Bacteria | 6351 |
| 22 | Ga0068855_100201088 | 3300005563 | Bacteria | 2243 |
| 23 | Ga0068855_100281359 | 3300005563 | Bacteria | 1847 |
| 24 | Ga0068856_100192924 | 3300005614 | Bacteria | 2051 |
| 25 | Ga0068852_100015865 | 3300005616 | Bacteria | 5859 |
| 26 | Ga0068852_100236503 | 3300005616 | Bacteria | 1744 |
| 27 | Ga0068864_100000038 | 3300005618 | Bacteria | 181005 |
| 28 | Ga0068864_100000979 | 3300005618 | Bacteria | 23959 |
| 29 | Ga0068863_100000026 | 3300005841 | Bacteria | 185590 |
| 30 | Ga0068863_100090770 | 3300005841 | Bacteria | 2897 |
| 31 | Ga0068858_100000061 | 3300005842 | Bacteria | 113998 |
| 32 | Ga0068860_100000234 | 3300005843 | Bacteria | 85182 |
| 33 | Ga0068862_100080959 | 3300005844 | Bacteria | 2817 |
| 34 | Ga0075363_100013739 | 3300006048 | Bacteria | 3937 |
| 35 | Ga0075364_10001300 | 3300006051 | Bacteria | 13438 |
| 36 | Ga0097621_100236973 | 3300006237 | Bacteria | 1594 |
| 37 | Ga0075370_10120591 | 3300006353 | Bacteria | 1527 |
| 38 | Ga0105240_10002347 | 3300009093 | Bacteria | 30533 |
| 39 | Ga0105240_10017623 | 3300009093 | Bacteria | 9620 |
| 40 | Ga0105240_10044766 | 3300009093 | Bacteria | 5619 |
| 41 | Ga0105240_10128629 | 3300009093 | Bacteria | 3040 |
| 42 | Ga0105240_10288972 | 3300009093 | Bacteria | 1880 |
| 43 | Ga0105248_10000115 | 3300009177 | Bacteria | 90607 |
| 44 | Ga0105248_10003125 | 3300009177 | Bacteria | 18322 |
| 45 | Ga0105248_10011419 | 3300009177 | Bacteria | 9789 |
| 46 | Ga0105238_10015127 | 3300009551 | Bacteria | 7815 |
| 47 | Ga0105238_10269708 | 3300009551 | Bacteria | 1682 |
| 48 | Ga0105249_10280070 | 3300009553 | Bacteria | 1665 |
| 49 | Ga0105239_10161279 | 3300010375 | Bacteria | 2505 |
| 50 | Ga0157370_10213163 | 3300013104 | Bacteria | 1790 |
| 51 | Ga0157375_10373470 | 3300013308 | Bacteria | 1592 |
| 52 | Ga0157379_10006553 | 3300014968 | Bacteria | 10043 |
| 53 | Ga0183365_10001 | 3300015684 | Bacteria | 2090444 |
| 54 | Ga0213876_10018734 | 3300021384 | Bacteria | 3656 |
| 55 | Ga0209758_1000331 | 3300025297 | Bacteria | 88922 |
| 56 | Ga0209050_1000130 | 3300025298 | Bacteria | 186070 |
| 57 | Ga0209257_1000059 | 3300025304 | Bacteria | 378097 |
| 58 | Ga0207705_10001887 | 3300025909 | Bacteria | 16435 |
| 59 | Ga0207707_10011192 | 3300025912 | Bacteria | 7804 |
| 60 | Ga0207695_10002873 | 3300025913 | Bacteria | 24991 |
| 61 | Ga0207695_10015664 | 3300025913 | Bacteria | 8918 |
| 62 | Ga0207695_10019662 | 3300025913 | Bacteria | 7767 |
| 63 | Ga0207695_10053956 | 3300025913 | Bacteria | 4201 |
| 64 | Ga0207660_10001382 | 3300025917 | Bacteria | 16279 |
| 65 | Ga0207657_10001112 | 3300025919 | Bacteria | 28539 |
| 66 | Ga0207657_10024639 | 3300025919 | Bacteria | 5566 |
| 67 | Ga0207652_10008275 | 3300025921 | Bacteria | 8360 |
| 68 | Ga0207694_10101126 | 3300025924 | Bacteria | 2284 |
| 69 | Ga0207694_10105803 | 3300025924 | Bacteria | 2234 |
| 70 | Ga0207650_10099361 | 3300025925 | Bacteria | 2237 |
| 71 | Ga0207690_10000090 | 3300025932 | Bacteria | 75242 |
| 72 | Ga0207690_10019601 | 3300025932 | Bacteria | 4169 |
| 73 | Ga0207706_10170394 | 3300025933 | Bacteria | 1913 |
| 74 | Ga0207704_10039722 | 3300025938 | Bacteria | 2743 |
| 75 | Ga0207711_10000227 | 3300025941 | Bacteria | 60371 |
| 76 | Ga0207711_10010826 | 3300025941 | Bacteria | 7581 |
| 77 | Ga0207667_10032283 | 3300025949 | Bacteria | 5644 |
| 78 | Ga0207667_10191484 | 3300025949 | Bacteria | 2099 |
| 79 | Ga0207667_10247524 | 3300025949 | Bacteria | 1824 |
| 80 | Ga0207651_10005569 | 3300025960 | Bacteria | 6484 |
| 81 | Ga0207668_10257840 | 3300025972 | Bacteria | 1419 |
| 82 | Ga0207703_10000149 | 3300026035 | Bacteria | 80168 |
| 83 | Ga0207639_10023795 | 3300026041 | Bacteria | 4425 |
| 84 | Ga0207639_10033435 | 3300026041 | Bacteria | 3794 |
| 85 | Ga0207678_10066231 | 3300026067 | Bacteria | 3102 |
| 86 | Ga0207702_10234512 | 3300026078 | Bacteria | 1716 |
| 87 | Ga0207641_10000005 | 3300026088 | Bacteria | 470841 |
| 88 | Ga0207641_10067775 | 3300026088 | Bacteria | 3058 |
| 89 | Ga0207676_10000085 | 3300026095 | Bacteria | 90147 |
| 90 | Ga0207676_10001421 | 3300026095 | Bacteria | 17792 |
| 91 | Ga0207675_100024464 | 3300026118 | Bacteria | 5615 |
| 92 | Ga0207698_10053137 | 3300026142 | Bacteria | 3108 |
| 93 | Ga0209813_10001874 | 3300027866 | Bacteria | 4747 |
| 94 | Ga0268266_10000005 | 3300028379 | Bacteria | 1448194 |
| 95 | Ga0268266_10096527 | 3300028379 | Bacteria | 2598 |
| 96 | Ga0268265_10004389 | 3300028380 | Bacteria | 9801 |
| 97 | Ga0268265_10045095 | 3300028380 | Bacteria | 3288 |
| 98 | Ga0268264_10000008 | 3300028381 | Bacteria | 773387 |
| 99 | Ga0307517_10001634 | 3300028786 | Bacteria | 37081 |
| 100 | Ga0307513_10001259 | 3300031456 | Bacteria | 36698 |
| 101 | Ga0307513_10002183 | 3300031456 | Bacteria | 27367 |
| 102 | Ga0307516_10000002 | 3300031730 | Bacteria | 467851 |
| 103 | Ga0307409_100433596 | 3300031995 | Bacteria | 1264 |
| 104 | Ga0307510_10022030 | 3300033180 | Bacteria | 7407 |
| 105 | Ga0373936_0019880 | 3300035113 | Bacteria | 2605 |
| 106 | Ga0373927_0000471 | 3300035695 | Bacteria | 30867 |
| 107 | Ga0373925_0000202 | 3300037068 | Bacteria | 64772 |
| 108 | Ga0395899_0000016 | 3300037312 | Bacteria | 468322 |
| 109 | Ga0395899_0001293 | 3300037312 | Bacteria | 21614 |
| 110 | Ga0395899_0117032 | 3300037312 | Bacteria | 1912 |
| 111 | Ga0395900_0000016 | 3300037418 | Bacteria | 382407 |
| 112 | Ga0395905_0000022 | 3300037471 | Bacteria | 321527 |
| 113 | Ga0395905_0007821 | 3300037471 | Bacteria | 10594 |
| 114 | Ga0395905_0035178 | 3300037471 | Bacteria | 4703 |
| 115 | Ga0436364_0017607 | 3300037853 | Bacteria | 1992 |
| 116 | Ga0436364_1200206 | 3300037853 | Bacteria | 2314 |
| 117 | Ga0436364_1332576 | 3300037853 | Bacteria | 1937 |
| 118 | Ga0395901_0000022 | 3300038443 | Bacteria | 296356 |
| 119 | Ga0436365_1542449 | 3300039437 | Bacteria | 3687 |
| 120 | Ga0466969_0015427 | 3300044656 | Bacteria | 4004 |
| 121 | Ga0466966_0000339 | 3300044684 | Bacteria | 30204 |
| 122 | Ga0466961_0043853 | 3300044693 | Bacteria | 2863 |
| 123 | Ga0466961_0100926 | 3300044693 | Bacteria | 1818 |
| 124 | Ga0466971_0004971 | 3300044719 | Bacteria | 5749 |
| 125 | Ga0466971_0019039 | 3300044719 | Bacteria | 3047 |
| 126 | Ga0466959_0000040 | 3300045049 | Bacteria | 101109 |
| 127 | Ga0466959_0104788 | 3300045049 | Bacteria | 2023 |
| 128 | Ga0495605_0119962 | 3300046474 | Bacteria | 1193 |
| 129 | Ga0495583_0012858 | 3300046506 | Bacteria | 4708 |
| 130 | Ga0495642_0004042 | 3300046528 | Bacteria | 5724 |
| 131 | Ga0495597_0002463 | 3300046542 | Bacteria | 11705 |
| 132 | Ga0495669_0017325 | 3300046684 | Bacteria | 3091 |
| 133 | Ga0495672_0013046 | 3300047320 | Bacteria | 5750 |
| 134 | Ga0495687_039671 | 3300047443 | Bacteria | 2082 |
| 135 | Ga0495686_0010101 | 3300047472 | Bacteria | 6738 |
| 136 | Ga0495593_0010243 | 3300047673 | Bacteria | 5421 |
| 137 | Ga0496100_0240189 | 3300048903 | Bacteria | 1336 |
| 138 | Ga0496102_0011813 | 3300048905 | Bacteria | 7537 |
| 139 | Ga0496109_0105168 | 3300048912 | Bacteria | 2621 |
| 140 | Ga0496110_0151087 | 3300048913 | Bacteria | 2103 |
| 141 | Ga0496112_0060250 | 3300048915 | Bacteria | 3740 |
| 142 | Ga0496113_0088421 | 3300048916 | Bacteria | 2383 |
| 143 | Ga0496115_0000237 | 3300048918 | Bacteria | 50057 |
| 144 | Ga0496115_0002444 | 3300048918 | Bacteria | 13348 |
| 145 | Ga0496117_0020628 | 3300048920 | Bacteria | 5366 |
| 146 | Ga0496118_0009251 | 3300048921 | Bacteria | 10000 |
| 147 | Ga0496121_0000059 | 3300048924 | Bacteria | 278177 |
| 148 | Ga0496122_0250952 | 3300048925 | Bacteria | 989 |
| 149 | Ga0501034_0035092 | 3300049571 | Bacteria | 5086 |
| 150 | Ga0501047_0004197 | 3300049581 | Bacteria | 13568 |
| 151 | Ga0501047_0205517 | 3300049581 | Bacteria | 1829 |
| 152 | Ga0501035_0001647 | 3300049822 | Bacteria | 22563 |
| 153 | Ga0501044_0397713 | 3300049823 | Bacteria | 1291 |
| 154 | nmdc:mga03n38_8059_c1 | 3300050490 | Bacteria | 3760 |
| 155 | nmdc:mga00v17_1503_c1 | 3300050491 | Bacteria | 12176 |
| 156 | nmdc:mga06z11_6567_c1 | 3300050494 | Bacteria | 4745 |
| 157 | nmdc:mga04h51_1859_c1 | 3300050495 | Bacteria | 4933 |
| 158 | Ga0500635_0000122 | 3300053080 | Bacteria | 45921 |
| 159 | Ga0500635_0000310 | 3300053080 | Bacteria | 17133 |
| 160 | Ga0500643_001592 | 3300053087 | Bacteria | 12831 |
| 161 | Ga0500651_0047681 | 3300053093 | Bacteria | 2693 |
| 162 | Ga0500566_0049013 | 3300053094 | Bacteria | 2420 |
| 163 | Ga0500641_0006185 | 3300053096 | Bacteria | 4243 |
| 164 | Ga0500555_000718 | 3300053103 | Bacteria | 12415 |
| 165 | Ga0500569_019183 | 3300053109 | Bacteria | 1777 |
| 166 | Ga0500595_040556 | 3300053119 | Bacteria | 1501 |
| 167 | Ga0500608_000695 | 3300053122 | Bacteria | 12306 |
| 168 | Ga0500608_001258 | 3300053122 | Bacteria | 9029 |
| 169 | Ga0500590_008276 | 3300053148 | Bacteria | 5184 |
| 170 | Ga0500637_0008998 | 3300053178 | Bacteria | 5064 |
| 171 | Ga0500625_021492 | 3300053729 | Bacteria | 3043 |
| 172 | Ga0500645_009470 | 3300053730 | Bacteria | 3271 |
| 173 | Ga0500596_003110 | 3300053735 | Bacteria | 3191 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300048925 | Ga0496122_0250952 | Ga0496122_0250952_11_964 | 316 |
| 2 | 3300005366 | Ga0070659_100000145 | Ga0070659_10000014528 | 353 |
| 3 | 3300005539 | Ga0068853_100156087 | Ga0068853_1001560872 | 353 |
| 4 | 3300009551 | Ga0105238_10015127 | Ga0105238_100151272 | 353 |
| 5 | 3300009553 | Ga0105249_10280070 | Ga0105249_102800702 | 353 |
| 6 | 3300025932 | Ga0207690_10000090 | Ga0207690_1000009016 | 353 |
| 7 | 3300035695 | Ga0373927_0000471 | Ga0373927_0000471_15814_16878 | 353 |
| 8 | 3300037068 | Ga0373925_0000202 | Ga0373925_0000202_54338_55402 | 353 |
| 9 | 3300046474 | Ga0495605_0119962 | Ga0495605_0119962_23_1087 | 353 |
| 10 | 3300048918 | Ga0496115_0002444 | Ga0496115_0002444_11796_12872 | 353 |
| 11 | iso_pu_bacteria | 2511231221 | 2512033425 | 356 |
| 12 | iso_pu_bacteria | 2597490356 | 2599101133 | 356 |
| 13 | iso_pu_bacteria | 2846952575 | 2846954147 | 356 |
| 14 | iso_pu_bacteria | 2848858292 | 2848859619 | 356 |
| 15 | iso_pu_bacteria | 2897803580 | 2897805911 | 356 |
| 16 | iso_pu_bacteria | 8054002106 | 8054002495 | 356 |
| 17 | 3300037312 | Ga0395899_0000016 | Ga0395899_0000016_110321_111433 | 357 |
| 18 | 3300005367 | Ga0070667_100021892 | Ga0070667_1000218924 | 358 |
| 19 | 3300026088 | Ga0207641_10067775 | Ga0207641_100677752 | 358 |
| 20 | 3300037853 | Ga0436364_1332576 | Ga0436364_1332576_255_1400 | 359 |
| 21 | 3300031995 | Ga0307409_100433596 | Ga0307409_1004335961 | 360 |
| 22 | 3300049581 | Ga0501047_0205517 | Ga0501047_0205517_579_1709 | 360 |
| 23 | 3300037853 | Ga0436364_0017607 | Ga0436364_0017607_262_1410 | 361 |
| 24 | 3300049823 | Ga0501044_0397713 | Ga0501044_0397713_16_1116 | 361 |
| 25 | 3300053087 | Ga0500643_001592 | Ga0500643_001592_7658_8755 | 361 |
| 26 | 3300005331 | Ga0070670_100213992 | Ga0070670_1002139922 | 363 |
| 27 | 3300005347 | Ga0070668_100067052 | Ga0070668_1000670523 | 363 |
| 28 | 3300005841 | Ga0068863_100090770 | Ga0068863_1000907702 | 363 |
| 29 | 3300005844 | Ga0068862_100080959 | Ga0068862_1000809593 | 363 |
| 30 | 3300013104 | Ga0157370_10213163 | Ga0157370_102131632 | 363 |
| 31 | 3300015684 | Ga0183365_10001 | Ga0183365_10001177 | 363 |
| 32 | 3300025925 | Ga0207650_10099361 | Ga0207650_100993612 | 363 |
| 33 | 3300025972 | Ga0207668_10257840 | Ga0207668_102578401 | 363 |
| 34 | 3300026118 | Ga0207675_100024464 | Ga0207675_1000244644 | 363 |
| 35 | 3300049571 | Ga0501034_0035092 | Ga0501034_0035092_2095_3192 | 363 |
| 36 | 3300053080 | Ga0500635_0000310 | Ga0500635_0000310_4747_5844 | 363 |
| 37 | 3300053122 | Ga0500608_001258 | Ga0500608_001258_5782_6879 | 363 |
| 38 | 3300003323 | rootH1_10079513 | rootH1_100795137 | 364 |
| 39 | 3300037471 | Ga0395905_0035178 | Ga0395905_0035178_2483_3580 | 364 |
| 40 | 3300044656 | Ga0466969_0015427 | Ga0466969_0015427_824_1921 | 364 |
| 41 | 3300044684 | Ga0466966_0000339 | Ga0466966_0000339_26799_27896 | 364 |
| 42 | 3300044693 | Ga0466961_0043853 | Ga0466961_0043853_1467_2564 | 364 |
| 43 | 3300044719 | Ga0466971_0004971 | Ga0466971_0004971_1490_2587 | 364 |
| 44 | 3300045049 | Ga0466959_0000040 | Ga0466959_0000040_65132_66229 | 364 |
| 45 | 3300003322 | rootL2_10068482 | rootL2_100684823 | 365 |
| 46 | 3300037471 | Ga0395905_0000022 | Ga0395905_0000022_183801_184901 | 365 |
| 47 | 3300044719 | Ga0466971_0019039 | Ga0466971_0019039_1320_2435 | 365 |
| 48 | 3300045049 | Ga0466959_0104788 | Ga0466959_0104788_661_1770 | 365 |
| 49 | 3300049822 | Ga0501035_0001647 | Ga0501035_0001647_1338_2444 | 367 |
| 50 | iso_pu_bacteria | 2739367756 | 2739792471 | 367 |
| 51 | iso_pu_bacteria | 2928531327 | 2928534312 | 368 |
| 52 | iso_pu_bacteria | 2643221541 | 2643727427 | 369 |
| 53 | iso_pu_bacteria | 2643221606 | 2644041413 | 369 |
| 54 | iso_pu_bacteria | 2643221671 | 2644394953 | 369 |
| 55 | 3300037312 | Ga0395899_0117032 | Ga0395899_0117032_281_1402 | 371 |
| 56 | 3300028380 | Ga0268265_10045095 | Ga0268265_100450953 | 372 |
| 57 | 3300009177 | Ga0105248_10000115 | Ga0105248_1000011528 | 374 |
| 58 | 3300025938 | Ga0207704_10039722 | Ga0207704_100397222 | 374 |
| 59 | 3300025941 | Ga0207711_10000227 | Ga0207711_1000022742 | 374 |
| 60 | 3300053119 | Ga0500595_040556 | Ga0500595_040556_70_1197 | 374 |
| 61 | 3300003215 | JGI25153J46596_10033039 | JGI25153J46596_100330392 | 375 |
| 62 | 3300003791 | Ga0055530_10000633 | Ga0055530_1000063310 | 375 |
| 63 | 3300003794 | Ga0055531_10002921 | Ga0055531_100029218 | 375 |
| 64 | 3300003794 | Ga0055531_10009202 | Ga0055531_100092023 | 375 |
| 65 | 3300005262 | Ga0065165_1001018 | Ga0065165_100101829 | 375 |
| 66 | 3300005336 | Ga0070680_100008711 | Ga0070680_1000087114 | 375 |
| 67 | 3300005336 | Ga0070680_100021856 | Ga0070680_1000218564 | 375 |
| 68 | 3300005366 | Ga0070659_100006721 | Ga0070659_1000067216 | 375 |
| 69 | 3300005457 | Ga0070662_100076885 | Ga0070662_1000768852 | 375 |
| 70 | 3300005458 | Ga0070681_10006793 | Ga0070681_1000679312 | 375 |
| 71 | 3300005530 | Ga0070679_100008875 | Ga0070679_10000887510 | 375 |
| 72 | 3300005539 | Ga0068853_100039443 | Ga0068853_1000394433 | 375 |
| 73 | 3300005548 | Ga0070665_100000194 | Ga0070665_10000019427 | 375 |
| 74 | 3300005563 | Ga0068855_100031325 | Ga0068855_1000313252 | 375 |
| 75 | 3300005563 | Ga0068855_100201088 | Ga0068855_1002010882 | 375 |
| 76 | 3300005563 | Ga0068855_100281359 | Ga0068855_1002813592 | 375 |
| 77 | 3300005614 | Ga0068856_100192924 | Ga0068856_1001929242 | 375 |
| 78 | 3300005616 | Ga0068852_100015865 | Ga0068852_1000158657 | 375 |
| 79 | 3300005616 | Ga0068852_100236503 | Ga0068852_1002365032 | 375 |
| 80 | 3300005618 | Ga0068864_100000038 | Ga0068864_10000003891 | 375 |
| 81 | 3300005618 | Ga0068864_100000979 | Ga0068864_10000097917 | 375 |
| 82 | 3300005841 | Ga0068863_100000026 | Ga0068863_10000002690 | 375 |
| 83 | 3300005842 | Ga0068858_100000061 | Ga0068858_10000006174 | 375 |
| 84 | 3300005843 | Ga0068860_100000234 | Ga0068860_1000002346 | 375 |
| 85 | 3300006048 | Ga0075363_100013739 | Ga0075363_1000137394 | 375 |
| 86 | 3300006051 | Ga0075364_10001300 | Ga0075364_100013007 | 375 |
| 87 | 3300006237 | Ga0097621_100236973 | Ga0097621_1002369732 | 375 |
| 88 | 3300006353 | Ga0075370_10120591 | Ga0075370_101205912 | 375 |
| 89 | 3300009093 | Ga0105240_10002347 | Ga0105240_100023471 | 375 |
| 90 | 3300009093 | Ga0105240_10017623 | Ga0105240_100176236 | 375 |
| 91 | 3300009093 | Ga0105240_10044766 | Ga0105240_100447666 | 375 |
| 92 | 3300009093 | Ga0105240_10128629 | Ga0105240_101286292 | 375 |
| 93 | 3300009093 | Ga0105240_10288972 | Ga0105240_102889722 | 375 |
| 94 | 3300009177 | Ga0105248_10003125 | Ga0105248_1000312518 | 375 |
| 95 | 3300009177 | Ga0105248_10011419 | Ga0105248_1001141910 | 375 |
| 96 | 3300009551 | Ga0105238_10269708 | Ga0105238_102697082 | 375 |
| 97 | 3300010375 | Ga0105239_10161279 | Ga0105239_101612792 | 375 |
| 98 | 3300013308 | Ga0157375_10373470 | Ga0157375_103734702 | 375 |
| 99 | 3300014968 | Ga0157379_10006553 | Ga0157379_100065531 | 375 |
| 100 | 3300021384 | Ga0213876_10018734 | Ga0213876_100187342 | 375 |
| 101 | 3300025297 | Ga0209758_1000331 | Ga0209758_100033147 | 375 |
| 102 | 3300025298 | Ga0209050_1000130 | Ga0209050_100013021 | 375 |
| 103 | 3300025304 | Ga0209257_1000059 | Ga0209257_1000059216 | 375 |
| 104 | 3300025909 | Ga0207705_10001887 | Ga0207705_100018874 | 375 |
| 105 | 3300025912 | Ga0207707_10011192 | Ga0207707_100111923 | 375 |
| 106 | 3300025913 | Ga0207695_10002873 | Ga0207695_1000287324 | 375 |
| 107 | 3300025913 | Ga0207695_10015664 | Ga0207695_100156648 | 375 |
| 108 | 3300025913 | Ga0207695_10019662 | Ga0207695_100196622 | 375 |
| 109 | 3300025913 | Ga0207695_10053956 | Ga0207695_100539563 | 375 |
| 110 | 3300025917 | Ga0207660_10001382 | Ga0207660_1000138214 | 375 |
| 111 | 3300025919 | Ga0207657_10001112 | Ga0207657_1000111227 | 375 |
| 112 | 3300025919 | Ga0207657_10024639 | Ga0207657_100246394 | 375 |
| 113 | 3300025921 | Ga0207652_10008275 | Ga0207652_100082753 | 375 |
| 114 | 3300025924 | Ga0207694_10101126 | Ga0207694_101011262 | 375 |
| 115 | 3300025924 | Ga0207694_10105803 | Ga0207694_101058033 | 375 |
| 116 | 3300025932 | Ga0207690_10019601 | Ga0207690_100196013 | 375 |
| 117 | 3300025933 | Ga0207706_10170394 | Ga0207706_101703942 | 375 |
| 118 | 3300025941 | Ga0207711_10010826 | Ga0207711_100108263 | 375 |
| 119 | 3300025949 | Ga0207667_10032283 | Ga0207667_100322833 | 375 |
| 120 | 3300025949 | Ga0207667_10191484 | Ga0207667_101914842 | 375 |
| 121 | 3300025949 | Ga0207667_10247524 | Ga0207667_102475242 | 375 |
| 122 | 3300025960 | Ga0207651_10005569 | Ga0207651_100055692 | 375 |
| 123 | 3300026035 | Ga0207703_10000149 | Ga0207703_1000014929 | 375 |
| 124 | 3300026041 | Ga0207639_10023795 | Ga0207639_100237956 | 375 |
| 125 | 3300026041 | Ga0207639_10033435 | Ga0207639_100334352 | 375 |
| 126 | 3300026067 | Ga0207678_10066231 | Ga0207678_100662312 | 375 |
| 127 | 3300026078 | Ga0207702_10234512 | Ga0207702_102345122 | 375 |
| 128 | 3300026088 | Ga0207641_10000005 | Ga0207641_10000005301 | 375 |
| 129 | 3300026095 | Ga0207676_10000085 | Ga0207676_1000008532 | 375 |
| 130 | 3300026095 | Ga0207676_10001421 | Ga0207676_100014212 | 375 |
| 131 | 3300026142 | Ga0207698_10053137 | Ga0207698_100531373 | 375 |
| 132 | 3300027866 | Ga0209813_10001874 | Ga0209813_100018745 | 375 |
| 133 | 3300028379 | Ga0268266_10000005 | Ga0268266_10000005535 | 375 |
| 134 | 3300028379 | Ga0268266_10096527 | Ga0268266_100965272 | 375 |
| 135 | 3300028380 | Ga0268265_10004389 | Ga0268265_100043896 | 375 |
| 136 | 3300028381 | Ga0268264_10000008 | Ga0268264_10000008710 | 375 |
| 137 | 3300028786 | Ga0307517_10001634 | Ga0307517_100016346 | 375 |
| 138 | 3300031456 | Ga0307513_10001259 | Ga0307513_1000125936 | 375 |
| 139 | 3300031456 | Ga0307513_10002183 | Ga0307513_1000218328 | 375 |
| 140 | 3300031730 | Ga0307516_10000002 | Ga0307516_1000000295 | 375 |
| 141 | 3300033180 | Ga0307510_10022030 | Ga0307510_100220304 | 375 |
| 142 | 3300035113 | Ga0373936_0019880 | Ga0373936_0019880_789_1919 | 375 |
| 143 | 3300037312 | Ga0395899_0001293 | Ga0395899_0001293_1993_3123 | 375 |
| 144 | 3300037418 | Ga0395900_0000016 | Ga0395900_0000016_162708_163838 | 375 |
| 145 | 3300037471 | Ga0395905_0007821 | Ga0395905_0007821_2433_3563 | 375 |
| 146 | 3300037853 | Ga0436364_1200206 | Ga0436364_1200206_322_1455 | 375 |
| 147 | 3300038443 | Ga0395901_0000022 | Ga0395901_0000022_200790_201920 | 375 |
| 148 | 3300039437 | Ga0436365_1542449 | Ga0436365_1542449_154_1284 | 375 |
| 149 | 3300044693 | Ga0466961_0100926 | Ga0466961_0100926_268_1413 | 375 |
| 150 | 3300046506 | Ga0495583_0012858 | Ga0495583_0012858_2890_4020 | 375 |
| 151 | 3300046528 | Ga0495642_0004042 | Ga0495642_0004042_1824_2954 | 375 |
| 152 | 3300046542 | Ga0495597_0002463 | Ga0495597_0002463_539_1669 | 375 |
| 153 | 3300046684 | Ga0495669_0017325 | Ga0495669_0017325_690_1820 | 375 |
| 154 | 3300047320 | Ga0495672_0013046 | Ga0495672_0013046_2771_3901 | 375 |
| 155 | 3300047443 | Ga0495687_039671 | Ga0495687_039671_520_1650 | 375 |
| 156 | 3300047472 | Ga0495686_0010101 | Ga0495686_0010101_2061_3191 | 375 |
| 157 | 3300047673 | Ga0495593_0010243 | Ga0495593_0010243_3509_4639 | 375 |
| 158 | 3300048903 | Ga0496100_0240189 | Ga0496100_0240189_61_1191 | 375 |
| 159 | 3300048905 | Ga0496102_0011813 | Ga0496102_0011813_977_2107 | 375 |
| 160 | 3300048912 | Ga0496109_0105168 | Ga0496109_0105168_35_1165 | 375 |
| 161 | 3300048913 | Ga0496110_0151087 | Ga0496110_0151087_749_1879 | 375 |
| 162 | 3300048915 | Ga0496112_0060250 | Ga0496112_0060250_160_1290 | 375 |
| 163 | 3300048916 | Ga0496113_0088421 | Ga0496113_0088421_1097_2227 | 375 |
| 164 | 3300048918 | Ga0496115_0000237 | Ga0496115_0000237_1290_2432 | 375 |
| 165 | 3300048920 | Ga0496117_0020628 | Ga0496117_0020628_2059_3189 | 375 |
| 166 | 3300048921 | Ga0496118_0009251 | Ga0496118_0009251_8860_9990 | 375 |
| 167 | 3300048924 | Ga0496121_0000059 | Ga0496121_0000059_4212_5342 | 375 |
| 168 | 3300049581 | Ga0501047_0004197 | Ga0501047_0004197_11469_12599 | 375 |
| 169 | 3300050490 | nmdc:mga03n38_8059_c1 | nmdc:mga03n38_8059_c1_1013_2143 | 375 |
| 170 | 3300050491 | nmdc:mga00v17_1503_c1 | nmdc:mga00v17_1503_c1_4971_6101 | 375 |
| 171 | 3300050494 | nmdc:mga06z11_6567_c1 | nmdc:mga06z11_6567_c1_388_1518 | 375 |
| 172 | 3300050495 | nmdc:mga04h51_1859_c1 | nmdc:mga04h51_1859_c1_1587_2717 | 375 |
| 173 | 3300053080 | Ga0500635_0000122 | Ga0500635_0000122_16296_17426 | 375 |
| 174 | 3300053093 | Ga0500651_0047681 | Ga0500651_0047681_615_1745 | 375 |
| 175 | 3300053094 | Ga0500566_0049013 | Ga0500566_0049013_1178_2308 | 375 |
| 176 | 3300053096 | Ga0500641_0006185 | Ga0500641_0006185_395_1525 | 375 |
| 177 | 3300053103 | Ga0500555_000718 | Ga0500555_000718_675_1805 | 375 |
| 178 | 3300053109 | Ga0500569_019183 | Ga0500569_019183_11_1141 | 375 |
| 179 | 3300053122 | Ga0500608_000695 | Ga0500608_000695_2956_4086 | 375 |
| 180 | 3300053148 | Ga0500590_008276 | Ga0500590_008276_3390_4520 | 375 |
| 181 | 3300053178 | Ga0500637_0008998 | Ga0500637_0008998_3869_4999 | 375 |
| 182 | 3300053729 | Ga0500625_021492 | Ga0500625_021492_977_2107 | 375 |
| 183 | 3300053730 | Ga0500645_009470 | Ga0500645_009470_831_1961 | 375 |
| 184 | 3300053735 | Ga0500596_003110 | Ga0500596_003110_1786_2916 | 375 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 8bj4-assembly2.cif.gz_D | crystal structure of medicago truncatula histidinol-phosphate aminotransferase (hisn6) in apo form | 0.9485 | 41 | 371 |
| 3get-assembly1.cif.gz_B | crystal structure of putative histidinol-phosphate aminotransferase (np_281508.1) from campylobacter jejuni at 2.01 a resolution | 0.9477 | 37 | 373 |
| 4r5z-assembly2.cif.gz_D | crystal structure of rv3772 encoded aminotransferase | 0.9435 | 14 | 374 |
| 4r5z-assembly2.cif.gz_D | crystal structure of rv3772 encoded aminotransferase | 0.9358 | 14 | 374 |
| 3ffh-assembly1.cif.gz_B | the crystal structure of histidinol-phosphate aminotransferase from listeria innocua clip11262. | 0.9269 | 37 | 371 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_Q2G087_68_261_3.40.640.10 | Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.9685 | 80 | 271 | 3.40.640.10 |
| 4r5zC02 | Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.9647 | 55 | 276 | 3.40.640.10 |
| af_Q2G087_68_261_3.40.640.10 | Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.9539 | 80 | 271 | 3.40.640.10 |
| af_P9WML5_24_353_3.50.50.60 | Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain | 0.9509 | 42 | 374 | 3.50.50.60 |
| 4r5zC02 | Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.94 | 55 | 276 | 3.40.640.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A7W5SSS8-F1-model_v4 | Histidinol-phosphate aminotransferase (EC 2.6.1.9) (Imidazole acetol-phosphate transaminase) | 0.9753 | 13 | 374 |
GO:0000105
GO:0004400 GO:0030170 |
| AF-A0A1G5EI07-F1-model_v4 | Histidinol-phosphate aminotransferase (EC 2.6.1.9) (Imidazole acetol-phosphate transaminase) | 0.9752 | 13 | 374 |
GO:0000105
GO:0004400 GO:0030170 |
| AF-A0A356FXC9-F1-model_v4 | Histidinol-phosphate transaminase (EC 2.6.1.9) | 0.9748 | 13 | 242 |
GO:0004400
GO:0009058 GO:0030170 |
| AF-A0A661T615-F1-model_v4 | Histidinol-phosphate transaminase (EC 2.6.1.9) | 0.974 | 70 | 372 |
GO:0000105
GO:0004400 GO:0030170 |
| AF-A0A6M0K5Q0-F1-model_v4 | Aminotransferase (EC 2.6.1.-) | 0.9731 | 36 | 369 |
GO:0008483
GO:0009058 GO:0030170 |
Predicted Structure (AlphaFold2)
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