F281352

General Info

Members Datasets Scaffolds Average Seq Length
183 123 148 436

Family's Representative Sequence

Representative Sequence 3300046507|Ga0495606_0026704|Ga0495606_0026704_269_1717
Length 482
Sequence MQFYENLPEYKFWQMHLRKLIFAPHYYFKHLKMSKAIAGFSKLTKEQKIEWIANEYFSEPEEAVNLLKSYWNTNESLQKLHDEFIENTITNFYLPLGIAPNFVINDKKYTIPMAVEESSVVAAAAKAAKFWAKRGGFKATVINTEKIGQVHFLFSGDFEKLSAFFKATKSKFIEGSQDLTKNMQARGGGILDIELREKTAELANYYQLHATFETKDSMGANFINSCLERFSKILKEEALHYAAFAEDEKQVQVIMSILSNYVPNCIVRAEVSCPVEDLHEDASVSPKEFAEKFITAVNIAEIEPFRAVTHNKGIMNGVDAVIVATGNDFRAVEAGVHAYASKNGKYSSLSHASVNDGIFTFWLELPLALGTVGGLTTLHPLVKFCHEMLGKPSAKELMQIVAVAGLAQNFAALRSLTTTGIQQGHMKMHIVNILNQLGASDAEKKQAVKHFEKNAVSHSAVADYITELRKNDPTRIEEDFLQ

Samples

Sample ID Description Type Environment
1 2513020052 Flavobacterium sp. CF136 Isolate Rhizosphere
2 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
3 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
4 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
5 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
6 2643221725 Flavobacterium sp. Root935 Isolate Unclassified
7 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
8 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
9 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
10 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
11 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
12 2802428842 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Isolate Unclassified
13 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
14 2833640130 Mariniflexile sp. TRM1-10 Isolate Rhizosphere
15 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
16 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
17 2881247448 Flavobacterium beibuense RSKm HC5 Isolate Rhizosphere
18 2881359912 Flavobacterium ustbae T13 Isolate Rhizosphere
19 2890804823 Fluviicola sp. SGL-29 Isolate Rhizosphere
20 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
21 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
22 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
23 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
24 2919509842 Flavobacterium arsenatis 3773 Isolate Unclassified
25 2919683626 Flavobacterium piscis 4129 Isolate Unclassified
26 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
27 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
28 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
29 2965320100 Flavobacterium agri MAH-1 Isolate Rhizosphere
30 2977268062 Flavobacterium sp. SORGH_AS 622 Isolate Unclassified
31 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
32 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
33 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
34 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
35 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
36 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
37 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
38 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
39 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
40 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
41 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
42 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
43 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
44 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
45 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
46 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
47 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
48 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
49 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
50 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
51 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
52 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
53 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
54 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
55 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
56 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
63 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
64 3300027526 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes) (version 2) Metagenome Rhizosphere
65 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
66 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
67 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
68 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
69 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
70 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
71 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
72 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
73 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
74 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
75 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
76 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
77 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
78 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
79 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
80 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
81 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
82 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
83 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
84 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
85 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
86 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
87 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
88 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
89 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
90 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
91 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
92 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
93 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
94 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
95 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
96 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
97 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
98 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
99 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
100 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
101 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
102 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
103 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
107 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
108 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
109 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
110 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
111 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
112 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
113 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
114 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
115 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
116 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
117 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
118 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
119 8036736890 Flavobacterium dauae TCH3-2 Isolate Rhizosphere
120 8054307821 Flavobacterium soyae SCIV07 Isolate Rhizosphere
121 8055419101 Flavobacterium tyrosinilyticum KCTC 42726 Isolate Rhizosphere
122 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere
123 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 80.87
Metatranscriptomes 0
Isolates 19.13

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.28
Nodule 3.28
Rhizoplane 0
Rhizosphere 77.05
Stem 0
Stem Tuber 0
Unclassified 16.39

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10317574 3300003320 Bacteria 3577
2 rootH1_10077093 3300003323 Bacteria 9342
3 Ga0065714_10005844 3300005288 Bacteria 3840
4 Ga0065714_10068109 3300005288 Bacteria 4961
5 Ga0065704_10072401 3300005289 Bacteria 8601
6 Ga0065715_10097238 3300005293 Bacteria 3740
7 Ga0065715_10100387 3300005293 Bacteria 3308
8 Ga0070658_10024765 3300005327 Bacteria 4813
9 Ga0068868_100092300 3300005338 Bacteria 2440
10 Ga0070668_100240533 3300005347 Unclassified 1499
11 Ga0070659_100222484 3300005366 Bacteria 1558
12 Ga0070701_10020503 3300005438 Bacteria 3140
13 Ga0070663_100009432 3300005455 Bacteria 6043
14 Ga0070681_10053630 3300005458 Bacteria 4019
15 Ga0068871_100117087 3300006358 Bacteria 2247
16 Ga0099824_1000030 3300006942 Bacteria 83906
17 Ga0079104_1000028 3300006946 Bacteria 208540
18 Ga0099826_10000160 3300006948 Bacteria 28107
19 Ga0105244_10000025 3300009036 Bacteria 217877
20 Ga0157373_10000003 3300013100 Bacteria 454601
21 Ga0157373_10054049 3300013100 Bacteria 2854
22 Ga0157371_10002601 3300013102 Bacteria 17133
23 Ga0157370_10000804 3300013104 Bacteria 39592
24 Ga0157370_10001678 3300013104 Bacteria 27275
25 Ga0157370_10007160 3300013104 Bacteria 12167
26 Ga0157370_10007994 3300013104 Bacteria 11462
27 Ga0157370_10015817 3300013104 Bacteria 7657
28 Ga0157370_10020989 3300013104 Bacteria 6514
29 Ga0157369_10000647 3300013105 Bacteria 44995
30 Ga0157369_10057997 3300013105 Bacteria 4177
31 Ga0163162_10017111 3300013306 Bacteria 7093
32 Ga0157380_10064515 3300014326 Bacteria 2940
33 Ga0182006_1004070 3300015261 Bacteria 7286
34 Ga0182006_1006504 3300015261 Bacteria 5422
35 Ga0163161_10000014 3300017792 Bacteria 258440
36 Ga0163161_10002383 3300017792 Bacteria 13465
37 Ga0207655_1000003 3300025728 Bacteria 1081376
38 Ga0207705_10085311 3300025909 Bacteria 2307
39 Ga0207652_10062647 3300025921 Bacteria 3214
40 Ga0207677_10084257 3300026023 Bacteria 2291
41 Ga0207678_10004714 3300026067 Bacteria 12238
42 Ga0207674_10044826 3300026116 Bacteria 4554
43 Ga0209281_1000069 3300027111 Bacteria 279747
44 Ga0209489_109109 3300027361 Bacteria 12702
45 Ga0209968_1000539 3300027526 Bacteria 5921
46 Ga0209282_1008472 3300027666 Bacteria 6490
47 Ga0265338_10094755 3300028800 Bacteria 2455
48 Ga0307408_100000562 3300031548 Bacteria 32039
49 Ga0316576_10009808 3300031727 Bacteria 6198
50 Ga0316576_10032415 3300031727 Bacteria 3713
51 Ga0307405_10000004 3300031731 Bacteria 444977
52 Ga0307413_10000007 3300031824 Bacteria 65102
53 Ga0307410_10003129 3300031852 Bacteria 8218
54 Ga0307406_10000044 3300031901 Bacteria 71261
55 Ga0307406_10013203 3300031901 Bacteria 4728
56 Ga0307407_10002196 3300031903 Bacteria 7524
57 Ga0307412_10061238 3300031911 Bacteria 2529
58 Ga0307416_100001280 3300032002 Bacteria 13550
59 Ga0307414_10000014 3300032004 Bacteria 302974
60 Ga0307414_10000137 3300032004 Bacteria 49784
61 Ga0307414_10000888 3300032004 Bacteria 15293
62 Ga0307414_10044256 3300032004 Bacteria 3038
63 Ga0307411_10000002 3300032005 Bacteria 534807
64 Ga0307411_10006899 3300032005 Bacteria 5725
65 Ga0307510_10064552 3300033180 Bacteria 3718
66 Ga0316574_0011621 3300035398 Bacteria 5013
67 Ga0316574_0094068 3300035398 Bacteria 1914
68 Ga0316584_0007049 3300036712 Bacteria 7653
69 Ga0316584_0025800 3300036712 Bacteria 4313
70 Ga0316584_0053536 3300036712 Bacteria 3020
71 Ga0316584_0143670 3300036712 Bacteria 1778
72 Ga0439447_000271 3300041407 Bacteria 18307
73 Ga0451837_0392446 3300041494 Bacteria 3475
74 Ga0451853_2436997 3300041512 Bacteria 18895
75 Ga0451577_0000010 3300042876 Bacteria 616686
76 Ga0451577_0000044 3300042876 Bacteria 329357
77 Ga0451577_0003365 3300042876 Bacteria 17896
78 Ga0451577_0006932 3300042876 Bacteria 11200
79 Ga0451577_0025508 3300042876 Bacteria 5361
80 Ga0451577_0037502 3300042876 Bacteria 4362
81 Ga0451577_0042533 3300042876 Bacteria 4074
82 Ga0451577_0098735 3300042876 Unclassified 2608
83 Ga0451577_0131174 3300042876 Unclassified 2248
84 Ga0453683_0000042 3300044673 Bacteria 217883
85 Ga0453683_0000699 3300044673 Bacteria 34983
86 Ga0453683_0003292 3300044673 Bacteria 11978
87 Ga0453683_0035814 3300044673 Bacteria 3126
88 Ga0453683_0098406 3300044673 Bacteria 1836
89 Ga0453683_0105887 3300044673 Unclassified 1767
90 Ga0453684_0000138 3300044712 Bacteria 321864
91 Ga0453684_0000283 3300044712 Bacteria 219542
92 Ga0453684_0000445 3300044712 Bacteria 167500
93 Ga0453684_0000448 3300044712 Bacteria 166223
94 Ga0453684_0000496 3300044712 Bacteria 154738
95 Ga0453684_0001569 3300044712 Bacteria 63366
96 Ga0453684_0002335 3300044712 Bacteria 46440
97 Ga0453684_0005545 3300044712 Bacteria 24906
98 Ga0453684_0012871 3300044712 Bacteria 13705
99 Ga0453684_0025397 3300044712 Bacteria 8604
100 Ga0453684_0044757 3300044712 Bacteria 5915
101 Ga0453684_0044758 3300044712 Bacteria 5915
102 Ga0453684_0057924 3300044712 Bacteria 5008
103 Ga0453684_0122449 3300044712 Bacteria 3138
104 Ga0451576_0000047 3300045051 Bacteria 329357
105 Ga0451576_0000095 3300045051 Bacteria 223485
106 Ga0451576_0002347 3300045051 Bacteria 28544
107 Ga0451576_0008689 3300045051 Bacteria 11890
108 Ga0451576_0297634 3300045051 Bacteria 1687
109 Ga0451576_0416116 3300045051 Bacteria 1410
110 Ga0495627_009410 3300046453 Bacteria 3597
111 Ga0495629_0032976 3300046459 Bacteria 3665
112 Ga0495606_0026704 3300046507 Bacteria 4110
113 Ga0495606_0042373 3300046507 Bacteria 3045
114 Ga0495643_0000306 3300046522 Bacteria 68322
115 Ga0495656_0000008 3300046615 Bacteria 226156
116 Ga0495625_0005874 3300046660 Bacteria 11059
117 Ga0495581_0062970 3300047315 Bacteria 2143
118 Ga0495636_0022736 3300047318 Bacteria 2537
119 Ga0495680_0026333 3300047322 Bacteria 4797
120 Ga0495681_0053815 3300047470 Bacteria 1883
121 Ga0496116_0000002 3300048919 Bacteria 920291
122 Ga0496121_0122853 3300048924 Bacteria 1957
123 Ga0496124_0009057 3300048927 Bacteria 10295
124 Ga0496125_0000007 3300048928 Bacteria 715355
125 Ga0496125_0000072 3300048928 Bacteria 238328
126 Ga0496126_0017444 3300048929 Bacteria 7152
127 Ga0496126_0095789 3300048929 Bacteria 2603
128 Ga0496126_0166785 3300048929 Bacteria 1879
129 Ga0501034_0096798 3300049571 Bacteria 2947
130 Ga0501036_0010056 3300049572 Bacteria 7794
131 Ga0501043_0102401 3300049579 Bacteria 2251
132 Ga0501070_0144985 3300049586 Bacteria 1960
133 Ga0501077_0049352 3300049593 Bacteria 2675
134 Ga0501223_001153 3300049663 Bacteria 6222
135 Ga0501238_000029 3300049671 Bacteria 25834
136 Ga0501249_000015 3300049679 Bacteria 124336
137 Ga0501249_001785 3300049679 Bacteria 4388
138 Ga0501266_000001 3300049763 Bacteria 562004
139 Ga0501269_002065 3300049766 Bacteria 2523
140 Ga0501280_000261 3300049776 Bacteria 13338
141 Ga0501035_0039564 3300049822 Bacteria 4266
142 Ga0501035_0362176 3300049822 Bacteria 1212
143 Ga0500646_0009344 3300053090 Bacteria 2511
144 Ga0500641_0000015 3300053096 Bacteria 141363
145 Ga0500641_0000065 3300053096 Bacteria 42860
146 Ga0500641_0000387 3300053096 Bacteria 16345
147 Ga0500594_0012274 3300053118 Bacteria 2016
148 Ga0500658_0000001 3300053134 Bacteria 592738

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049822 Ga0501035_0362176 Ga0501035_0362176_70_1182 358
2 3300044712 Ga0453684_0000496 Ga0453684_0000496_145456_146733 380
3 3300044712 Ga0453684_0001569 Ga0453684_0001569_47453_48766 380
4 3300031727 Ga0316576_10032415 Ga0316576_100324153 383
5 3300036712 Ga0316584_0143670 Ga0316584_0143670_37_1356 383
6 3300005347 Ga0070668_100240533 Ga0070668_1002405331 385
7 3300053096 Ga0500641_0000387 Ga0500641_0000387_4855_6261 387
8 3300005338 Ga0068868_100092300 Ga0068868_1000923002 388
9 3300005366 Ga0070659_100222484 Ga0070659_1002224842 388
10 3300005438 Ga0070701_10020503 Ga0070701_100205032 388
11 3300005455 Ga0070663_100009432 Ga0070663_1000094323 388
12 3300026023 Ga0207677_10084257 Ga0207677_100842572 388
13 3300026067 Ga0207678_10004714 Ga0207678_100047145 388
14 3300042876 Ga0451577_0042533 Ga0451577_0042533_35_1357 390
15 3300044712 Ga0453684_0025397 Ga0453684_0025397_587_1909 390
16 3300042876 Ga0451577_0098735 Ga0451577_0098735_1231_2553 392
17 3300046453 Ga0495627_009410 Ga0495627_009410_1443_2795 396
18 3300028800 Ga0265338_10094755 Ga0265338_100947552 397
19 3300044712 Ga0453684_0012871 Ga0453684_0012871_7604_8902 397
20 3300045051 Ga0451576_0416116 Ga0451576_0416116_47_1366 398
21 3300036712 Ga0316584_0007049 Ga0316584_0007049_1943_3268 401
22 3300041512 Ga0451853_2436997 Ga0451853_2436997_14460_15797 403
23 3300042876 Ga0451577_0131174 Ga0451577_0131174_181_1491 404
24 3300031731 Ga0307405_10000004 Ga0307405_10000004116 405
25 3300031727 Ga0316576_10009808 Ga0316576_100098087 408
26 3300036712 Ga0316584_0025800 Ga0316584_0025800_2514_3788 408
27 3300014326 Ga0157380_10064515 Ga0157380_100645152 409
28 3300044712 Ga0453684_0057924 Ga0453684_0057924_638_1981 409
29 3300003323 rootH1_10077093 rootH1_100770934 410
30 3300006358 Ga0068871_100117087 Ga0068871_1001170872 410
31 3300046459 Ga0495629_0032976 Ga0495629_0032976_362_1684 410
32 3300047315 Ga0495581_0062970 Ga0495581_0062970_579_1901 410
33 3300047322 Ga0495680_0026333 Ga0495680_0026333_127_1449 410
34 3300049593 Ga0501077_0049352 Ga0501077_0049352_750_2057 410
35 3300015261 Ga0182006_1006504 Ga0182006_10065043 411
36 3300005458 Ga0070681_10053630 Ga0070681_100536303 412
37 3300025921 Ga0207652_10062647 Ga0207652_100626472 412
38 3300026116 Ga0207674_10044826 Ga0207674_100448263 412
39 3300044712 Ga0453684_0005545 Ga0453684_0005545_8819_10138 413
40 iso_pu_bacteria 2513020052 2513232902 413
41 iso_pu_bacteria 2919683626 2919683853 413
42 iso_pu_bacteria 8056440228 8056443013 413
43 3300005289 Ga0065704_10072401 Ga0065704_100724016 415
44 3300013306 Ga0163162_10017111 Ga0163162_100171114 415
45 3300031901 Ga0307406_10013203 Ga0307406_100132033 415
46 3300045051 Ga0451576_0008689 Ga0451576_0008689_315_1619 415
47 3300013104 Ga0157370_10015817 Ga0157370_100158173 416
48 3300032004 Ga0307414_10044256 Ga0307414_100442562 416
49 3300033180 Ga0307510_10064552 Ga0307510_100645522 416
50 3300049679 Ga0501249_000015 Ga0501249_000015_54065_55363 416
51 3300053096 Ga0500641_0000065 Ga0500641_0000065_40566_41864 416
52 3300053118 Ga0500594_0012274 Ga0500594_0012274_61_1359 416
53 iso_pu_bacteria 2519899754 2520880836 416
54 iso_pu_bacteria 2643221667 2644371614 416
55 iso_pu_bacteria 2643221725 2644684490 416
56 iso_pu_bacteria 2738541279 2738735736 416
57 iso_pu_bacteria 2738541285 2738768313 416
58 iso_pu_bacteria 2738543007 2739217318 416
59 iso_pu_bacteria 2739367857 2739999999 416
60 iso_pu_bacteria 2739367858 2740004815 416
61 iso_pu_bacteria 2802428842 2802651615 416
62 iso_pu_bacteria 2816332280 2817414483 416
63 iso_pu_bacteria 2857613821 2857615536 416
64 iso_pu_bacteria 2857618242 2857622047 416
65 iso_pu_bacteria 2881359912 2881360853 416
66 iso_pu_bacteria 2904419702 2904422727 416
67 iso_pu_bacteria 2904555929 2904558127 416
68 iso_pu_bacteria 2919191525 2919192765 416
69 iso_pu_bacteria 2929150217 2929151634 416
70 iso_pu_bacteria 2958458903 2958459918 416
71 iso_pu_bacteria 2977268062 2977268352 416
72 iso_pu_bacteria 8036736890 8036737325 416
73 iso_pu_bacteria 8054307821 8054309155 416
74 iso_pu_bacteria 8055592153 8055596011 416
75 3300035398 Ga0316574_0094068 Ga0316574_0094068_491_1801 417
76 3300036712 Ga0316584_0053536 Ga0316584_0053536_581_1891 417
77 3300042876 Ga0451577_0000010 Ga0451577_0000010_500181_501491 417
78 3300044673 Ga0453683_0105887 Ga0453683_0105887_449_1756 417
79 iso_pu_bacteria 2643221600 2644012353 417
80 iso_pu_bacteria 2643221716 2644641046 417
81 iso_pu_bacteria 2903895155 2903895565 417
82 iso_pu_bacteria 2919509842 2919510800 417
83 iso_pu_bacteria 2833640130 2833642447 418
84 iso_pu_bacteria 2881247448 2881249180 418
85 iso_pu_bacteria 2958512119 2958515170 418
86 iso_pu_bacteria 2965320100 2965323697 418
87 3300005288 Ga0065714_10005844 Ga0065714_100058444 419
88 3300005288 Ga0065714_10068109 Ga0065714_100681092 419
89 3300005293 Ga0065715_10097238 Ga0065715_100972382 419
90 3300005293 Ga0065715_10100387 Ga0065715_101003873 419
91 3300006942 Ga0099824_1000030 Ga0099824_100003061 419
92 3300006946 Ga0079104_1000028 Ga0079104_1000028169 419
93 3300006948 Ga0099826_10000160 Ga0099826_1000016013 419
94 3300009036 Ga0105244_10000025 Ga0105244_1000002536 419
95 3300013100 Ga0157373_10000003 Ga0157373_10000003289 419
96 3300013102 Ga0157371_10002601 Ga0157371_100026016 419
97 3300013104 Ga0157370_10000804 Ga0157370_100008049 419
98 3300013104 Ga0157370_10007160 Ga0157370_100071604 419
99 3300013104 Ga0157370_10020989 Ga0157370_100209892 419
100 3300013105 Ga0157369_10000647 Ga0157369_1000064733 419
101 3300015261 Ga0182006_1004070 Ga0182006_10040704 419
102 3300017792 Ga0163161_10000014 Ga0163161_1000001481 419
103 3300025728 Ga0207655_1000003 Ga0207655_1000003641 419
104 3300027111 Ga0209281_1000069 Ga0209281_1000069227 419
105 3300027361 Ga0209489_109109 Ga0209489_1091099 419
106 3300027666 Ga0209282_1008472 Ga0209282_10084722 419
107 3300031548 Ga0307408_100000562 Ga0307408_10000056218 419
108 3300031824 Ga0307413_10000007 Ga0307413_1000000754 419
109 3300031852 Ga0307410_10003129 Ga0307410_100031294 419
110 3300031901 Ga0307406_10000044 Ga0307406_1000004430 419
111 3300031903 Ga0307407_10002196 Ga0307407_100021962 419
112 3300031911 Ga0307412_10061238 Ga0307412_100612382 419
113 3300032002 Ga0307416_100001280 Ga0307416_1000012804 419
114 3300032004 Ga0307414_10000014 Ga0307414_10000014114 419
115 3300032005 Ga0307411_10000002 Ga0307411_10000002436 419
116 3300041407 Ga0439447_000271 Ga0439447_000271_13550_14863 419
117 3300044673 Ga0453683_0035814 Ga0453683_0035814_1797_3113 419
118 3300048919 Ga0496116_0000002 Ga0496116_0000002_449603_450916 419
119 3300048924 Ga0496121_0122853 Ga0496121_0122853_211_1524 419
120 3300048927 Ga0496124_0009057 Ga0496124_0009057_5728_7041 419
121 3300048928 Ga0496125_0000007 Ga0496125_0000007_449634_450947 419
122 3300048929 Ga0496126_0017444 Ga0496126_0017444_1642_2955 419
123 3300048929 Ga0496126_0095789 Ga0496126_0095789_441_1754 419
124 3300049671 Ga0501238_000029 Ga0501238_000029_6825_8138 419
125 3300049679 Ga0501249_001785 Ga0501249_001785_964_2277 419
126 3300049763 Ga0501266_000001 Ga0501266_000001_155830_157143 419
127 3300049766 Ga0501269_002065 Ga0501269_002065_819_2132 419
128 3300049776 Ga0501280_000261 Ga0501280_000261_6165_7478 419
129 3300053090 Ga0500646_0009344 Ga0500646_0009344_121_1434 419
130 3300053096 Ga0500641_0000015 Ga0500641_0000015_8322_9635 419
131 3300053134 Ga0500658_0000001 Ga0500658_0000001_290986_292299 419
132 iso_pu_bacteria 2890804823 2890805432 419
133 iso_pu_bacteria 8055419101 8055419745 419
134 3300027526 Ga0209968_1000539 Ga0209968_10005393 420
135 3300032004 Ga0307414_10000888 Ga0307414_100008885 420
136 3300032005 Ga0307411_10006899 Ga0307411_100068994 420
137 3300035398 Ga0316574_0011621 Ga0316574_0011621_813_2129 420
138 3300041494 Ga0451837_0392446 Ga0451837_0392446_2093_3409 420
139 3300042876 Ga0451577_0006932 Ga0451577_0006932_3738_5057 420
140 3300042876 Ga0451577_0025508 Ga0451577_0025508_3208_4527 420
141 3300044712 Ga0453684_0000138 Ga0453684_0000138_72041_73360 420
142 3300047318 Ga0495636_0022736 Ga0495636_0022736_532_1845 420
143 3300048929 Ga0496126_0166785 Ga0496126_0166785_91_1407 420
144 3300049571 Ga0501034_0096798 Ga0501034_0096798_171_1523 420
145 3300013104 Ga0157370_10001678 Ga0157370_100016788 421
146 3300013104 Ga0157370_10007994 Ga0157370_100079942 421
147 3300017792 Ga0163161_10002383 Ga0163161_100023834 421
148 3300032004 Ga0307414_10000137 Ga0307414_100001374 421
149 3300042876 Ga0451577_0000044 Ga0451577_0000044_220012_221385 421
150 3300042876 Ga0451577_0003365 Ga0451577_0003365_13182_14507 421
151 3300042876 Ga0451577_0037502 Ga0451577_0037502_2414_3748 421
152 3300044673 Ga0453683_0000042 Ga0453683_0000042_111250_112575 421
153 3300044673 Ga0453683_0000699 Ga0453683_0000699_5125_6498 421
154 3300044673 Ga0453683_0003292 Ga0453683_0003292_290_1627 421
155 3300044673 Ga0453683_0098406 Ga0453683_0098406_210_1547 421
156 3300044712 Ga0453684_0000283 Ga0453684_0000283_80829_82202 421
157 3300044712 Ga0453684_0000445 Ga0453684_0000445_154293_155630 421
158 3300044712 Ga0453684_0000448 Ga0453684_0000448_63506_64831 421
159 3300044712 Ga0453684_0044757 Ga0453684_0044757_1866_3209 421
160 3300044712 Ga0453684_0044758 Ga0453684_0044758_1866_3209 421
161 3300045051 Ga0451576_0000047 Ga0451576_0000047_107973_109346 421
162 3300045051 Ga0451576_0000095 Ga0451576_0000095_21024_22349 421
163 3300045051 Ga0451576_0002347 Ga0451576_0002347_2966_4303 421
164 3300045051 Ga0451576_0297634 Ga0451576_0297634_87_1424 421
165 3300046507 Ga0495606_0026704 Ga0495606_0026704_269_1717 421
166 3300046507 Ga0495606_0042373 Ga0495606_0042373_899_2251 421
167 3300046522 Ga0495643_0000306 Ga0495643_0000306_16234_17586 421
168 3300046660 Ga0495625_0005874 Ga0495625_0005874_5593_6945 421
169 3300047470 Ga0495681_0053815 Ga0495681_0053815_386_1738 421
170 3300048928 Ga0496125_0000072 Ga0496125_0000072_39927_41330 421
171 3300049572 Ga0501036_0010056 Ga0501036_0010056_5049_6413 421
172 3300049579 Ga0501043_0102401 Ga0501043_0102401_227_1591 421
173 3300049822 Ga0501035_0039564 Ga0501035_0039564_829_2193 421
174 3300003320 rootH2_10317574 rootH2_103175742 422
175 3300005327 Ga0070658_10024765 Ga0070658_100247653 422
176 3300013100 Ga0157373_10054049 Ga0157373_100540492 422
177 3300013105 Ga0157369_10057997 Ga0157369_100579972 422
178 3300025909 Ga0207705_10085311 Ga0207705_100853112 422
179 3300044712 Ga0453684_0002335 Ga0453684_0002335_26717_28054 422
180 3300044712 Ga0453684_0122449 Ga0453684_0122449_1095_2444 422
181 3300046615 Ga0495656_0000008 Ga0495656_0000008_42411_43784 422
182 3300049586 Ga0501070_0144985 Ga0501070_0144985_360_1709 422
183 3300049663 Ga0501223_001153 Ga0501223_001153_314_1627 422

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00368

HMG-CoA_red

Hydroxymethylglutaryl-coenzyme A reductase

44

430

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
7n7s-assembly3.cif.gz_F crystal structure of hydroxymethylglutaryl-coa reductase from elizabethkingia anophelis nuhp1 0.8782 1 367
7m66-assembly2.cif.gz_D error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.8286 7 369
7n7s-assembly3.cif.gz_F crystal structure of hydroxymethylglutaryl-coa reductase from elizabethkingia anophelis nuhp1 0.8278 1 367
7m66-assembly2.cif.gz_D error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.8249 7 369
6p7k-assembly1.cif.gz_A structure of hmg-coa reductase from burkholderia cenocepacia 0.7964 4 368
ID Description Score Start End Superfamily
af_Q2FV77_209_372_3.90.770.10 Alpha Beta;Alpha-Beta Complex;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 0.9422 207 369 3.90.770.10
af_Q2FV77_209_372_3.90.770.10 Alpha Beta;Alpha-Beta Complex;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 0.9312 207 369 3.90.770.10
6hr7A02 Alpha Beta;Alpha-Beta Complex;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 0.7831 47 370 3.90.770.10
6hr8C03 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.7814 95 204 3.30.70.420
1qaxA01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.7705 98 212 3.30.70.420
ID Description Score Start End GO Terms
AF-A0A3D1I554-F1-model_v4 deleted 0.9808 117 189
AF-A0A7Y5A656-F1-model_v4 Hydroxymethylglutaryl-CoA reductase 0.9785 63 420 GO:0004420
GO:0015936
AF-A0A3D3XPK7-F1-model_v4 Hydroxymethylglutaryl-CoA reductase 0.9783 197 369 GO:0004420
GO:0015936
AF-A8DWT4-F1-model_v4 3-hydroxy-3-methylglutaryl coenzyme A reductase (HMG-CoA reductase) 0.9746 43 380 GO:0004420
GO:0005789
GO:0015936
AF-A0A6M1X906-F1-model_v4 deleted 0.9705 237 365

Feature Viewer

pLDDT pTM Quality
85.52 0.8 High
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Predicted Structure (AlphaFold2)

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