F281083

General Info

Members Datasets Scaffolds Average Seq Length
183 118 165 391

Family's Representative Sequence

Representative Sequence 3300031728|Ga0316578_10019231|Ga0316578_100192312
Length 438
Sequence MVDRGDAPRGGLVNTSPQNGVRKLFFFSATIFGSGRPQQVPGSFLRDCGWIFLSLVFLSGSSQIANADCLIRGTGDLGVVVERATGSVQILDTTARSRLFRVTGLGDLSHASVVFSRDERYAYIFGRDGGLSRVDLLCGTLDKRVVQAGNSIGGAISQDGSLVAVSNYTPGGVKVFDADSLVLVADLPAIGKDGKPSKVVGLVDAPGQQFVYTLYDAGEIRIADLSDRAAPVVTTYRDIGRLPYDALITPDGRYYIAGLFGEDGLALLDLWEPQEGVRRIMDHYGRGKEALPVYKMPHLEGWAMAGRYAFIPAVGQHEVLVVDSDSWQEVGRIAVHGQPVFVVARPDGRQVWVNFAHPLNDTVQVIDTQKMQVVHTLQPGKGVLHMEFAPRGETLWLSVRDDDQVQVYDTASLARVAQLKVEKPSGIFFTARAHRTGL

Samples

Sample ID Description Type Environment
1 2513237150 Cupriavidus taiwanensis STM6018 Isolate Nodule
2 2513237165 Cupriavidus neocaledonicus STM6070 Isolate Nodule
3 2526164512 Azovibrio restrictus DSM 23866 Isolate Unclassified
4 2547132512 Azospira oryzae 6a3 Isolate Unclassified
5 2643221717 Acidovorax sp. Root267 Isolate Unclassified
6 2728369097 Stutzerimonas balearica st101 Isolate Unclassified
7 2842333319 Skermanella aerolata SEMIA 4010 Isolate Nodule
8 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
9 2894510363 Methylomonas sp. Kb3 Isolate Unclassified
10 2974320154 Acidovorax wautersii SORGH_AS 335 Isolate Unclassified
11 2989392574 Methylomonas rhizoryzae GJ1 Isolate Unclassified
12 2990196909 Pseudomonas mangrovi TC-11 Isolate Unclassified
13 3007866637 Pseudomonas marvdashtae SWRI102 Isolate Rhizosphere
14 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
15 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
16 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
17 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
18 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
19 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
20 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
21 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
22 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
23 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
24 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
25 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
26 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
27 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
28 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
29 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
30 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
31 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
32 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
33 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
34 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
35 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
36 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
37 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
38 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
39 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
40 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
41 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
42 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
43 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
46 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
47 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
48 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
50 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
51 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
52 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
72 3300027552 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes) (version 2) Metagenome Rhizosphere
73 3300027614 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes) (version 2) Metagenome Rhizosphere
74 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
75 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
76 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
79 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
80 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
81 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
82 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
83 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
84 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
85 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
86 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
87 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
88 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
89 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
90 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
91 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
92 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
93 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
94 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
95 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
96 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
97 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
98 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
99 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
100 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
101 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
102 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
103 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
104 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
105 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
106 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
107 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
108 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
109 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
110 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
112 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
113 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
114 640427133 Stutzerimonas stutzeri A1501 Isolate Rhizosphere
115 644736347 Cupriavidus taiwanensis LMG 19424 Isolate Nodule
116 651053060 Stutzerimonas stutzeri CMT.A.9 Isolate Rhizosphere
117 8001522603 Methylomicrobium sp. RS1 Isolate Unclassified
118 8002392321 Alcaligenes faecalis Mc250 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.16
Metatranscriptomes 0
Isolates 9.84

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.57
Nodule 2.19
Rhizoplane 2.73
Rhizosphere 75.96
Stem 0
Stem Tuber 0
Unclassified 6.56

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000869 3300003187 Bacteria 23919
2 JGI25151J46595_10002563 3300003187 Bacteria 10761
3 Ga0055526_1003555 3300003771 Bacteria 9818
4 Ga0055526_1005159 3300003771 Bacteria 7609
5 Ga0055526_1006990 3300003771 Bacteria 5986
6 Ga0055537_1006369 3300003773 Bacteria 3005
7 Ga0055524_1000371 3300003775 Bacteria 39480
8 Ga0055524_1026144 3300003775 Bacteria 1813
9 Ga0055536_1000249 3300003781 Bacteria 42682
10 Ga0055534_1003420 3300003784 Bacteria 4987
11 Ga0070680_100021073 3300005336 Bacteria 5177
12 Ga0070660_100000581 3300005339 Bacteria 24544
13 Ga0070660_100015893 3300005339 Bacteria 5448
14 Ga0070668_100210225 3300005347 Bacteria 1600
15 Ga0070675_100021235 3300005354 Bacteria 5186
16 Ga0070671_100058358 3300005355 Bacteria 3213
17 Ga0070673_100286187 3300005364 Bacteria 1447
18 Ga0070659_100009133 3300005366 Bacteria 7270
19 Ga0070659_100110792 3300005366 Bacteria 2216
20 Ga0070662_100000078 3300005457 Bacteria 53638
21 Ga0070681_10050760 3300005458 Bacteria 4139
22 Ga0070681_10082856 3300005458 Bacteria 3162
23 Ga0070679_100086981 3300005530 Bacteria 3112
24 Ga0068853_100038151 3300005539 Bacteria 4091
25 Ga0068853_100077414 3300005539 Bacteria 2905
26 Ga0070672_100054144 3300005543 Bacteria 3140
27 Ga0070704_100086136 3300005549 Bacteria 2327
28 Ga0068855_100003106 3300005563 Bacteria 20323
29 Ga0070664_100001188 3300005564 Bacteria 20732
30 Ga0068854_100034090 3300005578 Bacteria 3554
31 Ga0068854_100068748 3300005578 Bacteria 2583
32 Ga0068856_100001001 3300005614 Bacteria 30117
33 Ga0068852_100005432 3300005616 Bacteria 9110
34 Ga0068861_100047033 3300005719 Bacteria 3256
35 Ga0105239_10022905 3300010375 Bacteria 6886
36 Ga0157373_10022094 3300013100 Bacteria 4617
37 Ga0157371_10001873 3300013102 Bacteria 21052
38 Ga0157370_10020021 3300013104 Bacteria 6694
39 Ga0157370_10046228 3300013104 Bacteria 4174
40 Ga0157369_10151016 3300013105 Bacteria 2455
41 Ga0157372_10001099 3300013307 Bacteria 29420
42 Ga0163163_10020061 3300014325 Bacteria 6290
43 Ga0209565_1000261 3300025263 Bacteria 55346
44 Ga0209675_1000156 3300025291 Bacteria 88813
45 Ga0209675_1000753 3300025291 Bacteria 21816
46 Ga0209676_1000364 3300025292 Bacteria 85375
47 Ga0209025_1000417 3300025294 Bacteria 85342
48 Ga0209025_1000516 3300025294 Bacteria 73496
49 Ga0209025_1004674 3300025294 Bacteria 11703
50 Ga0209564_1000611 3300025295 Bacteria 55354
51 Ga0209564_1001347 3300025295 Bacteria 26077
52 Ga0209564_1001466 3300025295 Bacteria 23865
53 Ga0209758_1038580 3300025297 Bacteria 1830
54 Ga0209256_1001020 3300025299 Bacteria 33025
55 Ga0209256_1002076 3300025299 Bacteria 17613
56 Ga0207707_10056890 3300025912 Bacteria 3404
57 Ga0207693_10142957 3300025915 Bacteria 1881
58 Ga0207660_10062685 3300025917 Bacteria 2679
59 Ga0207660_10076556 3300025917 Bacteria 2446
60 Ga0207657_10017904 3300025919 Bacteria 6778
61 Ga0207659_10011648 3300025926 Bacteria 5563
62 Ga0207644_10027864 3300025931 Bacteria 3905
63 Ga0207690_10000297 3300025932 Bacteria 35118
64 Ga0207706_10000008 3300025933 Bacteria 201940
65 Ga0207691_10047708 3300025940 Bacteria 3929
66 Ga0207679_10086325 3300025945 Bacteria 2413
67 Ga0207668_10142673 3300025972 Bacteria 1844
68 Ga0207640_10003948 3300025981 Bacteria 8001
69 Ga0207639_10081696 3300026041 Bacteria 2560
70 Ga0207639_10168967 3300026041 Bacteria 1850
71 Ga0207678_10138049 3300026067 Bacteria 2080
72 Ga0207702_10008478 3300026078 Bacteria 8668
73 Ga0207674_10012451 3300026116 Bacteria 9506
74 Ga0207675_100051390 3300026118 Bacteria 3845
75 Ga0207698_10004032 3300026142 Bacteria 8915
76 Ga0207698_10041137 3300026142 Bacteria 3441
77 Ga0209995_1001996 3300027471 Bacteria 3198
78 Ga0209982_1001795 3300027552 Bacteria 2957
79 Ga0209970_1005512 3300027614 Bacteria 2089
80 Ga0209983_1000924 3300027665 Bacteria 6453
81 Ga0209983_1002067 3300027665 Bacteria 4429
82 Ga0209971_1001437 3300027682 Bacteria 5923
83 Ga0209974_10001943 3300027876 Bacteria 7539
84 Ga0268265_10300606 3300028380 Bacteria 1445
85 Ga0265332_10000025 3300031238 Bacteria 197048
86 Ga0265316_10004223 3300031344 Bacteria 14347
87 Ga0307509_10000105 3300031507 Bacteria 119065
88 Ga0316575_10002668 3300031665 Bacteria 6012
89 Ga0316575_10003484 3300031665 Bacteria 5436
90 Ga0316579_10006845 3300031691 Bacteria 4674
91 Ga0316579_10018692 3300031691 Bacteria 3053
92 Ga0316576_10033318 3300031727 Bacteria 3666
93 Ga0316578_10001085 3300031728 Bacteria 10559
94 Ga0316578_10009628 3300031728 Bacteria 4973
95 Ga0316578_10019231 3300031728 Bacteria 3755
96 Ga0316578_10028510 3300031728 Bacteria 3162
97 Ga0316578_10035282 3300031728 Bacteria 2874
98 Ga0316578_10129777 3300031728 Bacteria 1516
99 Ga0316577_10007153 3300031733 Bacteria 5939
100 Ga0316577_10017577 3300031733 Bacteria 3949
101 Ga0316577_10027463 3300031733 Bacteria 3173
102 Ga0307412_10033213 3300031911 Bacteria 3278
103 Ga0316585_10001449 3300032137 Bacteria 6269
104 Ga0373957_0036397 3300035120 Bacteria 1834
105 Ga0316574_0001119 3300035398 Bacteria 12267
106 Ga0316574_0004772 3300035398 Bacteria 7162
107 Ga0316574_0011695 3300035398 Bacteria 4997
108 Ga0316574_0019263 3300035398 Bacteria 4022
109 Ga0316574_0039645 3300035398 Bacteria 2897
110 Ga0316574_0043830 3300035398 Bacteria 2766
111 Ga0316574_0099906 3300035398 Bacteria 1856
112 Ga0316574_0104048 3300035398 Bacteria 1817
113 Ga0316574_0187879 3300035398 Bacteria 1329
114 Ga0373937_0092687 3300036401 Bacteria 2800
115 Ga0316582_0001266 3300036647 Bacteria 10912
116 Ga0316582_0020484 3300036647 Bacteria 3889
117 Ga0316584_0003076 3300036712 Bacteria 10752
118 Ga0316584_0014756 3300036712 Bacteria 5577
119 Ga0316584_0016270 3300036712 Bacteria 5333
120 Ga0316584_0017690 3300036712 Bacteria 5131
121 Ga0316584_0166591 3300036712 Bacteria 1636
122 Ga0395899_0001858 3300037312 Bacteria 17464
123 Ga0395900_0002581 3300037418 Bacteria 19831
124 Ga0395905_0001525 3300037471 Bacteria 27709
125 Ga0316581_0008232 3300037588 Bacteria 2829
126 Ga0395901_0224880 3300038443 Bacteria 1961
127 Ga0451577_0000210 3300042876 Bacteria 122637
128 Ga0451577_0001940 3300042876 Bacteria 26066
129 Ga0451577_0007977 3300042876 Bacteria 10338
130 Ga0451577_0078580 3300042876 Bacteria 2941
131 Ga0451577_0093913 3300042876 Bacteria 2679
132 Ga0451577_0140872 3300042876 Bacteria 2167
133 Ga0451577_0238841 3300042876 Bacteria 1644
134 Ga0453683_0095002 3300044673 Bacteria 1870
135 Ga0453684_0000534 3300044712 Bacteria 144649
136 Ga0453684_0001349 3300044712 Bacteria 71826
137 Ga0453684_0005407 3300044712 Bacteria 25330
138 Ga0453684_0011003 3300044712 Bacteria 15289
139 Ga0453684_0065671 3300044712 Bacteria 4626
140 Ga0453684_0067403 3300044712 Bacteria 4551
141 Ga0453684_0152024 3300044712 Bacteria 2749
142 Ga0453684_0170534 3300044712 Bacteria 2565
143 Ga0451576_0000227 3300045051 Bacteria 137818
144 Ga0451576_0000879 3300045051 Bacteria 57498
145 Ga0451576_0002154 3300045051 Bacteria 30497
146 Ga0451576_0004863 3300045051 Bacteria 17199
147 Ga0451576_0009588 3300045051 Bacteria 11207
148 Ga0451576_0013429 3300045051 Bacteria 9164
149 Ga0451576_0020882 3300045051 Bacteria 7127
150 Ga0451576_0047253 3300045051 Bacteria 4527
151 Ga0451576_0060820 3300045051 Bacteria 3939
152 Ga0451576_0098209 3300045051 Bacteria 3045
153 Ga0451576_0098513 3300045051 Bacteria 3041
154 Ga0495590_0009566 3300046457 Bacteria 3679
155 Ga0495660_0029667 3300046810 Bacteria 3085
156 Ga0496101_0202617 3300048904 Bacteria 1535
157 Ga0496102_0065410 3300048905 Bacteria 3332
158 Ga0496106_0082053 3300048909 Bacteria 2477
159 Ga0496107_0003583 3300048910 Bacteria 10407
160 Ga0496110_0121582 3300048913 Bacteria 2353
161 Ga0496116_0004151 3300048919 Bacteria 13950
162 Ga0501034_0000056 3300049571 Bacteria 202540
163 Ga0501076_0043032 3300049592 Bacteria 3558
164 Ga0501079_0279960 3300049741 Bacteria 1304
165 nmdc:mga08y16_349104_c1 3300050511 Bacteria 1520

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300035120 Ga0373957_0036397 Ga0373957_0036397_12_1037 339
2 3300025915 Ga0207693_10142957 Ga0207693_101429572 350
3 3300031344 Ga0265316_10004223 Ga0265316_1000422310 352
4 3300003771 Ga0055526_1006990 Ga0055526_10069904 357
5 3300031665 Ga0316575_10003484 Ga0316575_100034844 358
6 3300031728 Ga0316578_10028510 Ga0316578_100285103 358
7 3300035398 Ga0316574_0104048 Ga0316574_0104048_404_1567 358
8 3300042876 Ga0451577_0238841 Ga0451577_0238841_12_1175 362
9 3300025917 Ga0207660_10076556 Ga0207660_100765564 365
10 3300031728 Ga0316578_10129777 Ga0316578_101297772 365
11 3300031733 Ga0316577_10017577 Ga0316577_100175772 365
12 3300036712 Ga0316584_0003076 Ga0316584_0003076_2444_3628 365
13 3300003771 Ga0055526_1003555 Ga0055526_10035557 368
14 3300005578 Ga0068854_100068748 Ga0068854_1000687484 368
15 3300013104 Ga0157370_10046228 Ga0157370_100462282 368
16 3300025295 Ga0209564_1001466 Ga0209564_10014669 368
17 3300026142 Ga0207698_10004032 Ga0207698_100040327 368
18 3300031728 Ga0316578_10009628 Ga0316578_100096284 368
19 3300031733 Ga0316577_10027463 Ga0316577_100274631 368
20 3300035398 Ga0316574_0019263 Ga0316574_0019263_1203_2393 368
21 3300037588 Ga0316581_0008232 Ga0316581_0008232_1162_2352 368
22 3300036712 Ga0316584_0014756 Ga0316584_0014756_850_2016 371
23 3300025291 Ga0209675_1000156 Ga0209675_100015669 373
24 3300025295 Ga0209564_1001347 Ga0209564_100134710 373
25 iso_pu_bacteria 644736347 644752060 373
26 3300036712 Ga0316584_0166591 Ga0316584_0166591_363_1568 374
27 3300042876 Ga0451577_0001940 Ga0451577_0001940_2554_3747 375
28 3300036647 Ga0316582_0020484 Ga0316582_0020484_585_1721 377
29 3300010375 Ga0105239_10022905 Ga0105239_100229057 380
30 3300037471 Ga0395905_0001525 Ga0395905_0001525_7997_9208 380
31 iso_pu_bacteria 2842333319 2842337672 380
32 3300044712 Ga0453684_0011003 Ga0453684_0011003_12452_13600 381
33 iso_pu_bacteria 8002392321 8002394648 381
34 3300027552 Ga0209982_1001795 Ga0209982_10017953 382
35 3300027665 Ga0209983_1000924 Ga0209983_10009245 382
36 3300027876 Ga0209974_10001943 Ga0209974_100019436 382
37 3300035398 Ga0316574_0039645 Ga0316574_0039645_1224_2402 382
38 3300035398 Ga0316574_0187879 Ga0316574_0187879_16_1170 382
39 3300042876 Ga0451577_0000210 Ga0451577_0000210_70572_71750 382
40 3300044712 Ga0453684_0000534 Ga0453684_0000534_136461_137639 382
41 3300035398 Ga0316574_0099906 Ga0316574_0099906_107_1261 383
42 3300044673 Ga0453683_0095002 Ga0453683_0095002_210_1364 383
43 3300005336 Ga0070680_100021073 Ga0070680_1000210732 384
44 3300005530 Ga0070679_100086981 Ga0070679_1000869812 384
45 iso_pu_bacteria 3007866637 3007869385 384
46 iso_pu_bacteria 640427133 640489469 384
47 iso_pu_bacteria 651053060 651177496 384
48 iso_pu_bacteria 2990196909 2990197418 385
49 iso_pu_bacteria 8001522603 8001523741 385
50 3300031665 Ga0316575_10002668 Ga0316575_100026686 386
51 3300031691 Ga0316579_10006845 Ga0316579_100068454 386
52 3300031691 Ga0316579_10018692 Ga0316579_100186922 386
53 3300031728 Ga0316578_10001085 Ga0316578_100010856 386
54 3300031728 Ga0316578_10035282 Ga0316578_100352823 386
55 3300031733 Ga0316577_10007153 Ga0316577_100071535 386
56 3300032137 Ga0316585_10001449 Ga0316585_100014493 386
57 3300035398 Ga0316574_0011695 Ga0316574_0011695_3793_4956 386
58 3300036647 Ga0316582_0001266 Ga0316582_0001266_1761_2933 386
59 3300036712 Ga0316584_0017690 Ga0316584_0017690_2096_3268 386
60 3300044712 Ga0453684_0152024 Ga0453684_0152024_331_1494 386
61 3300044712 Ga0453684_0170534 Ga0453684_0170534_736_1899 386
62 3300045051 Ga0451576_0000879 Ga0451576_0000879_11844_13007 386
63 3300045051 Ga0451576_0020882 Ga0451576_0020882_3384_4547 386
64 iso_pu_bacteria 2513237150 2513954831 386
65 iso_pu_bacteria 2513237165 2514042899 386
66 iso_pu_bacteria 2728369097 2729145703 386
67 iso_pu_bacteria 2894510363 2894511525 386
68 iso_pu_bacteria 2989392574 2989393269 386
69 3300031911 Ga0307412_10033213 Ga0307412_100332134 387
70 3300044712 Ga0453684_0005407 Ga0453684_0005407_4281_5450 387
71 3300045051 Ga0451576_0002154 Ga0451576_0002154_9601_10767 387
72 3300042876 Ga0451577_0093913 Ga0451577_0093913_960_2132 388
73 3300049571 Ga0501034_0000056 Ga0501034_0000056_198650_199819 388
74 3300003187 JGI25151J46595_10002563 JGI25151J46595_1000256310 389
75 3300003781 Ga0055536_1000249 Ga0055536_100024925 389
76 3300025292 Ga0209676_1000364 Ga0209676_100036463 389
77 3300025294 Ga0209025_1000417 Ga0209025_100041763 389
78 3300027471 Ga0209995_1001996 Ga0209995_10019961 389
79 3300027614 Ga0209970_1005512 Ga0209970_10055122 389
80 3300027665 Ga0209983_1002067 Ga0209983_10020672 389
81 3300027682 Ga0209971_1001437 Ga0209971_10014374 389
82 3300044712 Ga0453684_0065671 Ga0453684_0065671_3181_4353 389
83 3300031507 Ga0307509_10000105 Ga0307509_1000010582 390
84 3300036401 Ga0373937_0092687 Ga0373937_0092687_569_1753 390
85 3300042876 Ga0451577_0007977 Ga0451577_0007977_7963_9138 390
86 3300042876 Ga0451577_0078580 Ga0451577_0078580_61_1239 390
87 3300042876 Ga0451577_0140872 Ga0451577_0140872_596_1774 390
88 3300044712 Ga0453684_0001349 Ga0453684_0001349_12247_13425 390
89 3300045051 Ga0451576_0000227 Ga0451576_0000227_37423_38598 390
90 3300045051 Ga0451576_0004863 Ga0451576_0004863_10018_11196 390
91 3300045051 Ga0451576_0013429 Ga0451576_0013429_4548_5723 390
92 3300045051 Ga0451576_0047253 Ga0451576_0047253_1282_2460 390
93 3300045051 Ga0451576_0098209 Ga0451576_0098209_333_1511 390
94 3300045051 Ga0451576_0098513 Ga0451576_0098513_185_1360 390
95 3300046457 Ga0495590_0009566 Ga0495590_0009566_1575_2777 390
96 3300046810 Ga0495660_0029667 Ga0495660_0029667_127_1329 390
97 3300048919 Ga0496116_0004151 Ga0496116_0004151_6829_8070 390
98 iso_pu_bacteria 2547132512 2548846225 390
99 3300028380 Ga0268265_10300606 Ga0268265_103006062 391
100 3300035398 Ga0316574_0043830 Ga0316574_0043830_464_1714 391
101 3300044712 Ga0453684_0067403 Ga0453684_0067403_1281_2462 391
102 3300048913 Ga0496110_0121582 Ga0496110_0121582_1052_2242 391
103 3300049592 Ga0501076_0043032 Ga0501076_0043032_1122_2303 391
104 3300049741 Ga0501079_0279960 Ga0501079_0279960_71_1252 391
105 3300050511 nmdc:mga08y16_349104_c1 nmdc:mga08y16_349104_c1_330_1508 391
106 iso_pu_bacteria 2643221717 2644649363 391
107 iso_pu_bacteria 2846952575 2846958487 391
108 3300003775 Ga0055524_1026144 Ga0055524_10261442 392
109 3300005339 Ga0070660_100000581 Ga0070660_10000058123 392
110 3300005354 Ga0070675_100021235 Ga0070675_1000212352 392
111 3300005355 Ga0070671_100058358 Ga0070671_1000583582 392
112 3300005366 Ga0070659_100009133 Ga0070659_1000091337 392
113 3300005457 Ga0070662_100000078 Ga0070662_10000007817 392
114 3300005458 Ga0070681_10050760 Ga0070681_100507604 392
115 3300005539 Ga0068853_100077414 Ga0068853_1000774142 392
116 3300005543 Ga0070672_100054144 Ga0070672_1000541443 392
117 3300005563 Ga0068855_100003106 Ga0068855_10000310610 392
118 3300005564 Ga0070664_100001188 Ga0070664_1000011889 392
119 3300005578 Ga0068854_100034090 Ga0068854_1000340902 392
120 3300005614 Ga0068856_100001001 Ga0068856_10000100118 392
121 3300005616 Ga0068852_100005432 Ga0068852_1000054326 392
122 3300013100 Ga0157373_10022094 Ga0157373_100220945 392
123 3300013102 Ga0157371_10001873 Ga0157371_100018732 392
124 3300013307 Ga0157372_10001099 Ga0157372_1000109917 392
125 3300025294 Ga0209025_1004674 Ga0209025_10046749 392
126 3300025299 Ga0209256_1002076 Ga0209256_100207614 392
127 3300025912 Ga0207707_10056890 Ga0207707_100568903 392
128 3300025917 Ga0207660_10062685 Ga0207660_100626853 392
129 3300025926 Ga0207659_10011648 Ga0207659_100116484 392
130 3300025931 Ga0207644_10027864 Ga0207644_100278644 392
131 3300025932 Ga0207690_10000297 Ga0207690_1000029717 392
132 3300025933 Ga0207706_10000008 Ga0207706_10000008187 392
133 3300025940 Ga0207691_10047708 Ga0207691_100477083 392
134 3300025945 Ga0207679_10086325 Ga0207679_100863253 392
135 3300025981 Ga0207640_10003948 Ga0207640_100039486 392
136 3300026041 Ga0207639_10168967 Ga0207639_101689672 392
137 3300026078 Ga0207702_10008478 Ga0207702_100084784 392
138 3300026142 Ga0207698_10041137 Ga0207698_100411373 392
139 3300048904 Ga0496101_0202617 Ga0496101_0202617_246_1430 392
140 3300048905 Ga0496102_0065410 Ga0496102_0065410_1045_2229 392
141 3300048909 Ga0496106_0082053 Ga0496106_0082053_41_1225 392
142 3300048910 Ga0496107_0003583 Ga0496107_0003583_7144_8328 392
143 3300005347 Ga0070668_100210225 Ga0070668_1002102251 393
144 3300005719 Ga0068861_100047033 Ga0068861_1000470334 393
145 3300014325 Ga0163163_10020061 Ga0163163_100200614 393
146 3300025972 Ga0207668_10142673 Ga0207668_101426732 393
147 3300026067 Ga0207678_10138049 Ga0207678_101380491 393
148 3300026118 Ga0207675_100051390 Ga0207675_1000513903 393
149 3300031238 Ga0265332_10000025 Ga0265332_1000002589 393
150 3300031727 Ga0316576_10033318 Ga0316576_100333183 393
151 3300031728 Ga0316578_10019231 Ga0316578_100192312 393
152 3300035398 Ga0316574_0004772 Ga0316574_0004772_5768_7084 393
153 3300036712 Ga0316584_0016270 Ga0316584_0016270_3766_5046 393
154 3300037312 Ga0395899_0001858 Ga0395899_0001858_1160_2362 393
155 3300037418 Ga0395900_0002581 Ga0395900_0002581_13789_14991 393
156 3300038443 Ga0395901_0224880 Ga0395901_0224880_600_1793 393
157 3300005458 Ga0070681_10082856 Ga0070681_100828563 394
158 3300005539 Ga0068853_100038151 Ga0068853_1000381513 394
159 3300005549 Ga0070704_100086136 Ga0070704_1000861361 394
160 3300026041 Ga0207639_10081696 Ga0207639_100816963 394
161 3300026116 Ga0207674_10012451 Ga0207674_1001245110 394
162 3300035398 Ga0316574_0001119 Ga0316574_0001119_6420_7625 394
163 iso_pu_bacteria 2526164512 2526213329 394
164 iso_pu_bacteria 2974320154 2974320282 394
165 3300005339 Ga0070660_100015893 Ga0070660_1000158933 395
166 3300013104 Ga0157370_10020021 Ga0157370_100200213 395
167 3300013105 Ga0157369_10151016 Ga0157369_101510162 395
168 3300025919 Ga0207657_10017904 Ga0207657_100179045 395
169 3300045051 Ga0451576_0009588 Ga0451576_0009588_6604_7875 395
170 3300045051 Ga0451576_0060820 Ga0451576_0060820_1347_2618 395
171 3300005364 Ga0070673_100286187 Ga0070673_1002861872 397
172 3300005366 Ga0070659_100110792 Ga0070659_1001107922 397
173 3300003187 JGI25151J46595_10000869 JGI25151J46595_1000086914 400
174 3300003771 Ga0055526_1005159 Ga0055526_10051595 400
175 3300003773 Ga0055537_1006369 Ga0055537_10063694 400
176 3300003775 Ga0055524_1000371 Ga0055524_100037123 400
177 3300003784 Ga0055534_1003420 Ga0055534_10034204 400
178 3300025263 Ga0209565_1000261 Ga0209565_100026137 400
179 3300025291 Ga0209675_1000753 Ga0209675_100075318 400
180 3300025294 Ga0209025_1000516 Ga0209025_100051652 400
181 3300025295 Ga0209564_1000611 Ga0209564_100061137 400
182 3300025297 Ga0209758_1038580 Ga0209758_10385802 400
183 3300025299 Ga0209256_1001020 Ga0209256_100102014 400

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02239

Cytochrom_D1

Cytochrome D1 heme domain

72

433

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
6tv9-assembly4.cif.gz_F-3 heme d1 biosynthesis associated protein nirf in complex with dihydro-heme d1 0.944 34 400
6tv9-assembly4.cif.gz_F-3 heme d1 biosynthesis associated protein nirf in complex with dihydro-heme d1 0.9293 34 400
1hzv-assembly1.cif.gz_A-2 domain swing upon his to ala mutation in nitrite reductase of pseudomonas aeruginosa 0.8603 33 396
1dy7-assembly1.cif.gz_A cytochrome cd1 nitrite reductase, co complex 0.8556 36 395
1hj3-assembly1.cif.gz_A cytochrome cd1 nitrite reductase, dioxygen complex 0.8527 36 395
ID Description Score Start End Superfamily
af_A0A0R4IBY0_470_547_2.40.10.480 Mainly Beta;Beta Barrel;Thrombin, subunit H; 0.9148 323 383 2.40.10.480
af_A0A1D6E8A7_186_285_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.9075 73 141 2.130.10.10
af_O82266_16_144_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.8893 73 149 2.130.10.10
af_K7KEV0_4_122_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.889 301 381 2.130.10.10
af_Q79FU0_283_386_2.40.10.500 Mainly Beta;Beta Barrel;Thrombin, subunit H; 0.8788 299 387 2.40.10.500
ID Description Score Start End GO Terms
AF-C5T6T2-F1-model_v4 Cytochrome d1 heme region 0.9857 265 400
AF-A0A3B8TUI8-F1-model_v4 deleted 0.9819 277 400
AF-A0A657AGT2-F1-model_v4 Protein nirF 0.981 257 400
AF-A0A661BZQ7-F1-model_v4 Protein nirF 0.981 311 400
AF-A0A840MPN4-F1-model_v4 Protein NirF 0.9798 34 400

Feature Viewer

pLDDT pTM Quality
89.9 0.86 High
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Predicted Structure (AlphaFold2)

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