F281082

General Info

Members Datasets Scaffolds Average Seq Length
183 145 366 495

Family's Representative Sequence

Representative Sequence 3300031728|Ga0316578_10018654|Ga0316578_100186543
Length 607
Sequence MKEPHIEGVATHDDSESCVDDREVNDEALTGARAGSVLSRENRQSGAPTPLTEAEGNTTRGRHRESSGGPARSQTRSTCGTFSRENREVPMSPTTDGVAGRAGKAEGRTPAMYDQGKSDKPVVPTKPPNNAGQPVAEVVEGRGLAKGNTDEQNAPRTQSRTSAQSALDRVREAATRNKGMRFTALLHHVDVDRLRTAFRALKKDAAPGIDGMTWQQYAEHLEENLRDLHRRLRQGAYRARPSRRTFIPKADGRQRPLGIASLEDKIVQRAIVEVLNAIYEPDFLGFSYGFRPGRSQHHALDALSAGIVRKKVNWVLDADIRGFFDAIDHSWLVKFVEHRVGDRRVLRLIQKWLTAGVMENGKWTESEEGSPQGATVSPLLANIYLHYALDIWVQQWRKKQAYGDVIVVRYADDFIVGFQHRADAERFLAELRERLAKFRLELHPDKTRLIAFGRFALLDRQRRGEAGSPETFNFLGFTHICARPRTGRFLLRHTMRTRMTAKLHAVKTEMQRRRHQPIPEQGVWLASVVRGHVAYYGVPTNSKAIDAFRTQVAKSWHRALRRRSQRVRLTWNRMGRLIARWLPTARIVHPWPDSRFDVSTRGKSPVR

Samples

Sample ID Description Type Environment
1 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
2 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
3 3300004798 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
4 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
5 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
6 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
9 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
10 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
11 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
12 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
13 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
14 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
15 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
16 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
17 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
18 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
19 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
22 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
23 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
24 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
25 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
26 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
27 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
28 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
29 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
30 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
31 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
32 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
33 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
34 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
35 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
37 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
39 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
40 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
41 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
42 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
43 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
44 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
45 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
46 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
61 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
62 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
65 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
66 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
67 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
68 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
69 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
70 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
71 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
72 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
73 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
74 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
75 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
76 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
77 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
78 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
79 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
80 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
81 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
82 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
83 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
84 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
85 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
86 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
87 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
88 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
89 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
90 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
91 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
92 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
93 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
94 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
95 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
96 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
97 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
98 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
99 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
100 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
101 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
106 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
113 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
114 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
115 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
116 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
117 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
118 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
119 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
120 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
121 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
122 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
123 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
124 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
125 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
126 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
127 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
128 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
129 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
130 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
131 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
132 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
133 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
134 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
135 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
136 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
137 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
138 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
139 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
140 3300053159 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 endosphere Metagenome Endosphere
141 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
142 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
143 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
144 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
145 2903748898 Bradyrhizobium uaiense UFLA 03-164 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 98.91
Metatranscriptomes 0.55
Isolates 0.55

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.84
Nodule 0.55
Rhizoplane 1.09
Rhizosphere 84.7
Stem 0
Stem Tuber 0
Unclassified 0.55

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0316578_10018654 3300031728 Bacteria 3807
2 JGI25404J52841_10003606 3300003659 Bacteria 3073
3 JGI25404J52841_10005102 3300003659 Bacteria 2702
4 Ga0058859_10050687 3300004798 Bacteria 2020
5 Ga0065704_10112165 3300005289 Bacteria 1940
6 Ga0065707_10125644 3300005295 Bacteria 2019
7 Ga0070690_100040021 3300005330 Bacteria 2963
8 Ga0070690_100081614 3300005330 Bacteria 2116
9 Ga0070689_100072762 3300005340 Bacteria 2687
10 Ga0070689_100084377 3300005340 Bacteria 2496
11 Ga0070667_100209375 3300005367 Bacteria 1733
12 Ga0070705_100067756 3300005440 Bacteria 2145
13 Ga0070708_100084770 3300005445 Bacteria 2874
14 Ga0070708_100156581 3300005445 Bacteria 2121
15 Ga0070708_100165782 3300005445 Bacteria 2061
16 Ga0068867_100082461 3300005459 Bacteria 2426
17 Ga0070707_100082303 3300005468 Bacteria 3108
18 Ga0070698_100119470 3300005471 Bacteria 2596
19 Ga0070698_100185058 3300005471 Bacteria 2021
20 Ga0070679_100082083 3300005530 Bacteria 3214
21 Ga0070684_100118518 3300005535 Bacteria 2379
22 Ga0070697_100064762 3300005536 Bacteria 2985
23 Ga0070686_100010754 3300005544 Bacteria 5173
24 Ga0070693_100048493 3300005547 Bacteria 2419
25 Ga0070704_100106846 3300005549 Bacteria 2122
26 Ga0068855_100158912 3300005563 Bacteria 2566
27 Ga0068857_100019916 3300005577 Bacteria 5897
28 Ga0068854_100100836 3300005578 Bacteria 2164
29 Ga0070702_100014304 3300005615 Bacteria 4024
30 Ga0068859_100147291 3300005617 Bacteria 2430
31 Ga0068863_100153869 3300005841 Bacteria 2201
32 Ga0068860_100109169 3300005843 Bacteria 2644
33 Ga0068862_100038407 3300005844 Bacteria 4060
34 Ga0081455_10017439 3300005937 Bacteria 6884
35 Ga0081455_10093751 3300005937 Bacteria 2427
36 Ga0081540_1031873 3300005983 Bacteria 2888
37 Ga0075365_10103153 3300006038 Bacteria 1954
38 Ga0070712_100018362 3300006175 Bacteria 4542
39 Ga0075428_100046274 3300006844 Bacteria 4779
40 Ga0075428_100240204 3300006844 Bacteria 1954
41 Ga0075431_100055780 3300006847 Bacteria 4076
42 Ga0075433_10190881 3300006852 Bacteria 1822
43 Ga0097620_100147292 3300006931 Bacteria 2430
44 Ga0099794_10017418 3300007265 Plasmid 3202
45 Ga0111539_10098235 3300009094 Bacteria 3439
46 Ga0105248_10205834 3300009177 Bacteria 2217
47 Ga0105249_10050437 3300009553 Bacteria 3794
48 Ga0105249_10262259 3300009553 Bacteria 1717
49 Ga0157370_10157616 3300013104 Bacteria 2112
50 Ga0163162_10231307 3300013306 Bacteria 1979
51 Ga0157375_10239242 3300013308 Bacteria 1975
52 Ga0157379_10027518 3300014968 Bacteria 5062
53 Ga0157379_10104034 3300014968 Bacteria 2548
54 Ga0213875_10030170 3300021388 Bacteria 2568
55 Ga0213871_10009711 3300021441 Bacteria 2163
56 Ga0213871_10016074 3300021441 Bacteria 1798
57 Ga0207645_10053443 3300025907 Bacteria 2582
58 Ga0207707_10096468 3300025912 Bacteria 2584
59 Ga0207693_10110832 3300025915 Bacteria 2152
60 Ga0207663_10050592 3300025916 Bacteria 2583
61 Ga0207649_10091299 3300025920 Bacteria 1994
62 Ga0207646_10132321 3300025922 Bacteria 2245
63 Ga0207670_10072757 3300025936 Bacteria 2381
64 Ga0207670_10077472 3300025936 Bacteria 2316
65 Ga0207711_10121074 3300025941 Bacteria 2336
66 Ga0207679_10072450 3300025945 Bacteria 2602
67 Ga0207667_10198909 3300025949 Bacteria 2056
68 Ga0207658_10139834 3300025986 Bacteria 1958
69 Ga0207703_10158595 3300026035 Bacteria 1980
70 Ga0207648_10098485 3300026089 Bacteria 2560
71 Ga0207674_10022148 3300026116 Bacteria 6829
72 Ga0209813_10001787 3300027866 Bacteria 4848
73 Ga0207428_10082692 3300027907 Bacteria 2505
74 Ga0268265_10147284 3300028380 Bacteria 1980
75 Ga0268264_10171783 3300028381 Bacteria 1961
76 Ga0265325_10022965 3300031241 Bacteria 3411
77 Ga0265329_10022116 3300031242 Bacteria 2130
78 Ga0265340_10019873 3300031247 Bacteria 3456
79 Ga0265340_10023124 3300031247 Bacteria 3171
80 Ga0265316_10041684 3300031344 Bacteria 3672
81 Ga0265313_10016771 3300031595 Bacteria 4199
82 Ga0265313_10018904 3300031595 Bacteria 3854
83 Ga0316579_10032930 3300031691 Bacteria 2378
84 Ga0373936_0037172 3300035113 Bacteria 1943
85 Ga0373945_0020960 3300035116 Bacteria 2242
86 Ga0373961_0009499 3300035241 Bacteria 2382
87 Ga0373935_0086890 3300035692 Bacteria 2041
88 Ga0373927_0074029 3300035695 Bacteria 2205
89 Ga0373925_0065570 3300037068 Bacteria 2735
90 Ga0400485_10144 3300038735 Bacteria 2260
91 Ga0400487_02169 3300039110 Bacteria 2013
92 Ga0400487_65871 3300039110 Bacteria 1967
93 Ga0436365_1530669 3300039437 Bacteria 2571
94 Ga0436360_0464048 3300039438 Bacteria 2083
95 Ga0436360_1369573 3300039438 Bacteria 2415
96 Ga0436363_0232014 3300039450 Bacteria 3445
97 Ga0466964_0024312 3300044706 Bacteria 2361
98 Ga0495651_0002171 3300046462 Bacteria 15171
99 Ga0495580_0090483 3300046472 Unclassified 2130
100 Ga0495639_0041385 3300046475 Bacteria 2075
101 Ga0495662_0087511 3300046476 Bacteria 1517
102 Ga0495584_0042169 3300046491 Bacteria 2303
103 Ga0495607_0060388 3300046501 Bacteria 2158
104 Ga0495630_0001110 3300046517 Bacteria 18520
105 Ga0495632_0039012 3300046519 Bacteria 2401
106 Ga0495644_0013609 3300046523 Bacteria 3120
107 Ga0495598_0004510 3300046537 Bacteria 3021
108 Ga0495656_0012714 3300046615 Bacteria 3113
109 Ga0495635_0000839 3300046663 Bacteria 20098
110 Ga0495659_0004907 3300046664 Bacteria 4211
111 Ga0495647_0025305 3300046681 Bacteria 2167
112 Ga0495670_0013991 3300046691 Bacteria 3947
113 Ga0495636_0015218 3300047318 Bacteria 3065
114 Ga0495602_0146306 3300048088 Bacteria 1864
115 Ga0496104_0229396 3300048907 Bacteria 1769
116 Ga0496114_0011815 3300048917 Bacteria 6987
117 Ga0501031_0158730 3300049568 Bacteria 1478
118 Ga0501036_0128515 3300049572 Bacteria 2139
119 Ga0501037_0056568 3300049573 Bacteria 2864
120 Ga0501038_0071415 3300049574 Bacteria 2944
121 Ga0501038_0169630 3300049574 Bacteria 1768
122 Ga0501038_0230184 3300049574 Bacteria 1475
123 Ga0501039_0011108 3300049575 Bacteria 6864
124 Ga0501039_0101946 3300049575 Bacteria 2240
125 Ga0501040_0019441 3300049576 Bacteria 4517
126 Ga0501041_0010830 3300049577 Bacteria 5379
127 Ga0501041_0068585 3300049577 Bacteria 2174
128 Ga0501042_0002875 3300049578 Bacteria 10681
129 Ga0501043_0058261 3300049579 Bacteria 3032
130 Ga0501046_0021929 3300049580 Bacteria 5264
131 Ga0501046_0095930 3300049580 Bacteria 2278
132 Ga0501048_0011073 3300049582 Bacteria 6724
133 Ga0501068_0050472 3300049584 Bacteria 2515
134 Ga0501068_0072789 3300049584 Bacteria 2099
135 Ga0501068_0074686 3300049584 Bacteria 2072
136 Ga0501070_0143050 3300049586 Bacteria 1974
137 Ga0501071_0041722 3300049587 Bacteria 3286
138 Ga0501071_0103625 3300049587 Bacteria 2099
139 Ga0501072_0081956 3300049588 Bacteria 2557
140 Ga0501072_0085262 3300049588 Bacteria 2505
141 Ga0501072_0115382 3300049588 Bacteria 2138
142 Ga0501073_0001925 3300049589 Bacteria 15455
143 Ga0501074_0026946 3300049590 Bacteria 4165
144 Ga0501075_0001940 3300049591 Bacteria 13643
145 Ga0501075_0094861 3300049591 Bacteria 2264
146 Ga0501076_0002864 3300049592 Bacteria 11938
147 Ga0501076_0144532 3300049592 Bacteria 1933
148 Ga0501077_0020394 3300049593 Bacteria 4195
149 Ga0501080_0013671 3300049742 Bacteria 7474
150 Ga0501081_0008162 3300049743 Bacteria 6794
151 Ga0501083_0024576 3300049744 Bacteria 4173
152 Ga0501083_0055303 3300049744 Bacteria 2661
153 Ga0501045_0094312 3300049824 Bacteria 2213
154 Ga0501045_0103106 3300049824 Bacteria 2112
155 nmdc:mga00v17_89266_c1 3300050491 Bacteria 1934
156 nmdc:mga0yw44_30921_c1 3300050492 Bacteria 2005
157 nmdc:mga05p37_56848_c1 3300050507 Bacteria 4818
158 nmdc:mga06r32_31850_c1 3300050510 Bacteria 4955
159 nmdc:mga0n895_208528_c1 3300050512 Bacteria 1985
160 nmdc:mga0n895_269073_c1 3300050512 Bacteria 1729
161 Ga0495601_0013421 3300053077 Bacteria 4927
162 Ga0500640_002007 3300053095 Bacteria 6546
163 Ga0500554_003509 3300053102 Bacteria 3221
164 Ga0500572_002687 3300053111 Bacteria 4206
165 Ga0500572_011049 3300053111 Bacteria 2174
166 Ga0500594_0014085 3300053118 Bacteria 1910
167 Ga0500595_012639 3300053119 Bacteria 3257
168 Ga0500597_011297 3300053120 Bacteria 3226
169 Ga0500614_000988 3300053123 Bacteria 7062
170 Ga0500614_014915 3300053123 Bacteria 1727
171 Ga0500642_0013343 3300053130 Bacteria 3016
172 Ga0500642_0094414 3300053130 Bacteria 1385
173 Ga0500559_0006201 3300053136 Bacteria 5412
174 Ga0500630_045719 3300053159 Bacteria 2127
175 Ga0500645_013529 3300053730 Bacteria 2617
176 Ga0501084_0010251 3300054114 Bacteria 7755
177 Ga0501082_0004814 3300060353 Bacteria 11772
178 Ga0501082_0134137 3300060353 Bacteria 2148
179 Ga0530510_0001001 3300061734 Bacteria 18765
180 Ga0530510_0103562 3300061734 Bacteria 2081
181 Ga0530510_0110891 3300061734 Bacteria 2009
182 Ga0530510_0118139 3300061734 Bacteria 1945
183 2903752830 2903748898 Bacteria 9972761
184 Ga0316578_10018654
185 JGI25404J52841_10003606
186 JGI25404J52841_10005102
187 Ga0058859_10050687
188 Ga0065704_10112165
189 Ga0065707_10125644
190 Ga0070690_100040021
191 Ga0070690_100081614
192 Ga0070689_100072762
193 Ga0070689_100084377
194 Ga0070667_100209375
195 Ga0070705_100067756
196 Ga0070708_100084770
197 Ga0070708_100156581
198 Ga0070708_100165782
199 Ga0068867_100082461
200 Ga0070707_100082303
201 Ga0070698_100119470
202 Ga0070698_100185058
203 Ga0070679_100082083
204 Ga0070684_100118518
205 Ga0070697_100064762
206 Ga0070686_100010754
207 Ga0070693_100048493
208 Ga0070704_100106846
209 Ga0068855_100158912
210 Ga0068857_100019916
211 Ga0068854_100100836
212 Ga0070702_100014304
213 Ga0068859_100147291
214 Ga0068863_100153869
215 Ga0068860_100109169
216 Ga0068862_100038407
217 Ga0081455_10017439
218 Ga0081455_10093751
219 Ga0081540_1031873
220 Ga0075365_10103153
221 Ga0070712_100018362
222 Ga0075428_100046274
223 Ga0075428_100240204
224 Ga0075431_100055780
225 Ga0075433_10190881
226 Ga0097620_100147292
227 Ga0099794_10017418
228 Ga0111539_10098235
229 Ga0105248_10205834
230 Ga0105249_10050437
231 Ga0105249_10262259
232 Ga0157370_10157616
233 Ga0163162_10231307
234 Ga0157375_10239242
235 Ga0157379_10027518
236 Ga0157379_10104034
237 Ga0213875_10030170
238 Ga0213871_10009711
239 Ga0213871_10016074
240 Ga0207645_10053443
241 Ga0207707_10096468
242 Ga0207693_10110832
243 Ga0207663_10050592
244 Ga0207649_10091299
245 Ga0207646_10132321
246 Ga0207670_10072757
247 Ga0207670_10077472
248 Ga0207711_10121074
249 Ga0207679_10072450
250 Ga0207667_10198909
251 Ga0207658_10139834
252 Ga0207703_10158595
253 Ga0207648_10098485
254 Ga0207674_10022148
255 Ga0209813_10001787
256 Ga0207428_10082692
257 Ga0268265_10147284
258 Ga0268264_10171783
259 Ga0265325_10022965
260 Ga0265329_10022116
261 Ga0265340_10019873
262 Ga0265340_10023124
263 Ga0265316_10041684
264 Ga0265313_10016771
265 Ga0265313_10018904
266 Ga0316579_10032930
267 Ga0373936_0037172
268 Ga0373945_0020960
269 Ga0373961_0009499
270 Ga0373935_0086890
271 Ga0373927_0074029
272 Ga0373925_0065570
273 Ga0400485_10144
274 Ga0400487_02169
275 Ga0400487_65871
276 Ga0436365_1530669
277 Ga0436360_0464048
278 Ga0436360_1369573
279 Ga0436363_0232014
280 Ga0466964_0024312
281 Ga0495651_0002171
282 Ga0495580_0090483
283 Ga0495639_0041385
284 Ga0495662_0087511
285 Ga0495584_0042169
286 Ga0495607_0060388
287 Ga0495630_0001110
288 Ga0495632_0039012
289 Ga0495644_0013609
290 Ga0495598_0004510
291 Ga0495656_0012714
292 Ga0495635_0000839
293 Ga0495659_0004907
294 Ga0495647_0025305
295 Ga0495670_0013991
296 Ga0495636_0015218
297 Ga0495602_0146306
298 Ga0496104_0229396
299 Ga0496114_0011815
300 Ga0501031_0158730
301 Ga0501036_0128515
302 Ga0501037_0056568
303 Ga0501038_0071415
304 Ga0501038_0169630
305 Ga0501038_0230184
306 Ga0501039_0011108
307 Ga0501039_0101946
308 Ga0501040_0019441
309 Ga0501041_0010830
310 Ga0501041_0068585
311 Ga0501042_0002875
312 Ga0501043_0058261
313 Ga0501046_0021929
314 Ga0501046_0095930
315 Ga0501048_0011073
316 Ga0501068_0050472
317 Ga0501068_0072789
318 Ga0501068_0074686
319 Ga0501070_0143050
320 Ga0501071_0041722
321 Ga0501071_0103625
322 Ga0501072_0081956
323 Ga0501072_0085262
324 Ga0501072_0115382
325 Ga0501073_0001925
326 Ga0501074_0026946
327 Ga0501075_0001940
328 Ga0501075_0094861
329 Ga0501076_0002864
330 Ga0501076_0144532
331 Ga0501077_0020394
332 Ga0501080_0013671
333 Ga0501081_0008162
334 Ga0501083_0024576
335 Ga0501083_0055303
336 Ga0501045_0094312
337 Ga0501045_0103106
338 nmdc:mga00v17_89266_c1
339 nmdc:mga0yw44_30921_c1
340 nmdc:mga05p37_56848_c1
341 nmdc:mga06r32_31850_c1
342 nmdc:mga0n895_208528_c1
343 nmdc:mga0n895_269073_c1
344 Ga0495601_0013421
345 Ga0500640_002007
346 Ga0500554_003509
347 Ga0500572_002687
348 Ga0500572_011049
349 Ga0500594_0014085
350 Ga0500595_012639
351 Ga0500597_011297
352 Ga0500614_000988
353 Ga0500614_014915
354 Ga0500642_0013343
355 Ga0500642_0094414
356 Ga0500559_0006201
357 Ga0500630_045719
358 Ga0500645_013529
359 Ga0501084_0010251
360 Ga0501082_0004814
361 Ga0501082_0134137
362 Ga0530510_0001001
363 Ga0530510_0103562
364 Ga0530510_0110891
365 Ga0530510_0118139
366 2903752830

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00078

RVT_1

Reverse transcriptase (RNA-dependent DNA polymerase)

247

479

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
8t2r-assembly1.cif.gz_D structure of a group ii intron ribonucleoprotein in the pre-ligation (pre-2f) state 0.8409 74 455
8bgj-assembly2.cif.gz_B crystal structure of reverse transcriptase domain from caloramator australicus cart-capp 0.8092 146 368
6mec-assembly1.cif.gz_C structure of a group ii intron retroelement after dna integration 0.805 58 459
5irg-assembly2.cif.gz_C reverse transcriptase domain of group ii intron maturase from roseburia intestinalis in p212121 space group 0.7927 74 382
8bgj-assembly2.cif.gz_B crystal structure of reverse transcriptase domain from caloramator australicus cart-capp 0.7867 146 368
ID Description Score Start End Superfamily
af_P05511_299_561_3.20.20.210 Alpha Beta;Alpha-Beta Barrel;TIM Barrel; 0.8412 138 342 3.20.20.210
af_Q47688_90_332_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.8154 137 342 3.30.70.270
af_Q54BA4_491_738_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.804 146 344 3.30.70.270
af_Q54I16_1_187_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.7765 191 344 3.30.70.270
af_A0A1D6JF34_14_351_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.7681 81 341 3.30.70.270
ID Description Score Start End GO Terms
AF-T1BKY0-F1-model_v4 Reverse transcriptase/maturase 0.9823 363 471 GO:0003964
AF-A0A023XWC6-F1-model_v4 deleted 0.979 266 491
AF-E6QUY1-F1-model_v4 Putative RNA-directed DNA polymerase (Reverse transcriptase) (EC 2.7.7.49) 0.9753 266 488 GO:0003720
AF-A0A838E385-F1-model_v4 Group II intron reverse transcriptase/maturase 0.9681 263 492 GO:0003964
AF-T1BKY0-F1-model_v4 Reverse transcriptase/maturase 0.9647 363 471 GO:0003964

Map