F280925

General Info

Members Datasets Scaffolds Average Seq Length
183 158 122 466

Family's Representative Sequence

Representative Sequence 3300021384|Ga0213876_10011886|Ga0213876_100118862
Length 512
Sequence VVCDVTETVQAEPGVNGQQPQNGERPQLTLATEAARNLATTTKSQPQMQAITSRWLLRVLPWVEAVGGTFRVNRRASFTLGDGRIQFRMNGDENIKPIPEELCELPMLRQLNYVEHRDMLVELADAFQLRNIERGSTVVQQGQPADRLFLIAHGKANKIGPGKYGDPTVLGTLHDGDYFGDRELVTESDNWTYTVRAVTPLKVLELPEQAFRQLVDRSEPLRNSYEKFRDIVANAAEAADEHGEKRIQLSADHPQEHLLDGTYVDYQLSPREYQLSVAQTVLRVHTRVADLYNNPMNQFEEQLRLTIEALREKQENELMNNTDFGLLHNAEPQQRVSTRSGPPTPDDLDELIATVWKEPDVMLAHPRAIAAFGRECNNRGIYPMSIDLGGQKVPAWRGIPMLPCNKIPIDKYQTSSIVLMRTGLEKQGVIGLHQTGLPDEVQPGLNVRFMHIDDKAIMHYLVSAYYSAAVMVPDALGILENVEVGVYHDDDSLSPNGQTPQSSESRSSRKSK

Samples

Sample ID Description Type Environment
1 2506783011 Frankia datiscae Dg1 Isolate Nodule
2 2527291627 Frankia casuarinae Thr Isolate Nodule
3 2527291629 Frankia sp. BMG5.23 Isolate Nodule
4 2546825537 Frankia sp. CcI6 Isolate Rhizoplane
5 2558860112 Pseudonocardia acaciae DSM 45401 Isolate Unclassified
6 2576861822 Frankia sp. CeD Isolate Nodule
7 2579778521 Frankia torreyi CpI1-S Isolate Unclassified
8 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
9 2617270889 Nostoc punctiforme PCC 73102 Isolate Unclassified
10 2619618881 Frankia sp. ACN1ag Isolate Unclassified
11 2619619003 Frankia sp. CpI1-P Isolate Nodule
12 2626541554 Frankia sp. AvcI.1 Isolate Nodule
13 2643221692 Nocardia sp. Root136 Isolate Unclassified
14 2671180195 Frankia sp. CcI49 Isolate Nodule
15 2675902999 Frankia asymbiotica NRRL B-16386 Isolate Nodule
16 2684623035 Frankia sp. NRRL B-16219 Isolate Rhizosphere
17 2684623036 Frankia sp. CgIM4 Isolate Nodule
18 2687453743 Frankia colletiae Cc1.17 Isolate Nodule
19 2710264753 Frankia sp. KB5 Isolate Nodule
20 2773857921 Frankia asymbiotica NRRL B-16386 Isolate Nodule
21 2773857922 Frankia sp. CcI49 Isolate Nodule
22 2773857924 Frankia sp. CgIS1 Isolate Nodule
23 2773857933 Frankia sp. BMG5.30 Isolate Nodule
24 2775506925 Saccharopolyspora phatthalungensis NRRL B-24798 Isolate Rhizosphere
25 2808606522 Amycolatopsis sp. BJA-103 Isolate Unclassified
26 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
27 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
28 2866552031 Saccharopolyspora rhizosphaerae H219 Isolate Unclassified
29 2867346516 Streptomyces radicis AZ1-7 Isolate Unclassified
30 2867369537 Streptomyces sp. Z26 Isolate Unclassified
31 2867475112 Streptomyces sp. TM32 Isolate Unclassified
32 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified
33 2886627955 Nostoc sp. PA-18-2419 JC1668 Isolate Unclassified
34 2891326441 Actinokineospora pegani TRM65233 Isolate Unclassified
35 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
36 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
37 2891562705 Microbispora tritici MT50 Isolate Unclassified
38 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
39 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
40 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
41 2913844669 Nostocales cyanobacterium LEGE 12452 Isolate Unclassified
42 2913939268 Nostoc sp. LEGE 12447 Isolate Unclassified
43 2915768154 Amycolatopsis pittospori PIP199 Isolate Unclassified
44 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
45 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
46 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
47 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
48 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
49 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
50 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
51 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
52 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
53 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
54 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
55 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
56 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
57 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
58 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
59 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
60 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
61 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
62 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
63 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
64 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
65 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
66 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
67 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
68 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
69 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
70 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
71 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
72 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
73 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
88 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
89 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
90 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
91 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
92 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
93 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
94 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
95 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
96 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
97 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
98 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
99 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
100 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
101 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
102 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
103 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
104 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
105 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
106 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
107 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
108 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
109 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
110 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
111 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
112 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
113 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
114 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
115 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
116 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
117 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
118 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
119 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
120 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
121 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
122 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
123 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
124 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
125 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
126 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
127 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
128 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
129 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
130 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
131 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
132 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
133 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
134 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
135 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
136 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
137 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
138 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
139 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
140 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
141 3300053101 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 endosphere Metagenome Endosphere
142 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
143 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
144 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
145 637000116 Frankia casuarinae CcI3 Isolate Nodule
146 642555144 Nostoc punctiforme PCC 73102 Isolate Unclassified
147 8002775197 Frankia nepalensis CN7 Isolate Nodule
148 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
149 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
150 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
151 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
152 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
153 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
154 8054920844 Frankia tisae Agncl-8 Isolate Nodule
155 8055157932 Frankia umida Ag45/Mut15 Isolate Nodule
156 8056054917 Glycomyces luteolus NEAU-A15 Isolate Rhizosphere
157 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere
158 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 65.03
Metatranscriptomes 2.73
Isolates 32.24

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.73
Nodule 10.93
Rhizoplane 1.64
Rhizosphere 61.2
Stem 0
Stem Tuber 0
Unclassified 23.5

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10147786 3300003320 Bacteria 2290
2 Ga0070658_10154356 3300005327 Bacteria 1924
3 Ga0070714_100013864 3300005435 Bacteria 6464
4 Ga0070714_100099469 3300005435 Bacteria 2560
5 Ga0070713_100056706 3300005436 Bacteria 3259
6 Ga0068853_100139865 3300005539 Bacteria 2173
7 Ga0070665_100028149 3300005548 Bacteria 5659
8 Ga0068855_100007437 3300005563 Bacteria 13263
9 Ga0068856_100123032 3300005614 Bacteria 2597
10 Ga0068859_100064392 3300005617 Bacteria 3698
11 Ga0068858_100000152 3300005842 Bacteria 72991
12 Ga0070717_10004985 3300006028 Bacteria 9658
13 Ga0070717_10035017 3300006028 Bacteria 4061
14 Ga0070717_10116953 3300006028 Bacteria 2280
15 Ga0097620_100064391 3300006931 Bacteria 3698
16 Ga0105240_10041060 3300009093 Bacteria 5909
17 Ga0105247_10000262 3300009101 Bacteria 48787
18 Ga0105247_10003289 3300009101 Bacteria 10588
19 Ga0105241_10001210 3300009174 Bacteria 19717
20 Ga0105248_10009655 3300009177 Bacteria 10628
21 Ga0105237_10043135 3300009545 Bacteria 4546
22 Ga0157374_10103806 3300013296 Bacteria 2728
23 Ga0157379_10000543 3300014968 Bacteria 30457
24 Ga0157379_10018415 3300014968 Bacteria 6158
25 Ga0197907_10768831 3300020069 Bacteria 3607
26 Ga0206356_11061856 3300020070 Bacteria 1842
27 Ga0206352_10861308 3300020078 Bacteria 2537
28 Ga0206350_10076506 3300020080 Bacteria 3060
29 Ga0213876_10011886 3300021384 Bacteria 4641
30 Ga0213875_10000333 3300021388 Bacteria 44800
31 Ga0224712_10011971 3300022467 Bacteria 2711
32 Ga0207426_1000533 3300025302 Bacteria 54735
33 Ga0207426_1001103 3300025302 Bacteria 24859
34 Ga0207710_10000040 3300025900 Bacteria 229443
35 Ga0207710_10000168 3300025900 Bacteria 69338
36 Ga0207647_10034052 3300025904 Bacteria 3255
37 Ga0207695_10038806 3300025913 Bacteria 5122
38 Ga0207671_10000488 3300025914 Bacteria 53807
39 Ga0207694_10012003 3300025924 Bacteria 6532
40 Ga0207700_10080534 3300025928 Bacteria 2540
41 Ga0207664_10029776 3300025929 Bacteria 4162
42 Ga0207711_10013139 3300025941 Bacteria 6876
43 Ga0207667_10129937 3300025949 Bacteria 2594
44 Ga0207668_10052021 3300025972 Bacteria 2833
45 Ga0207640_10097793 3300025981 Bacteria 2050
46 Ga0207703_10000181 3300026035 Bacteria 73537
47 Ga0207708_10182703 3300026075 Bacteria 1666
48 Ga0207702_10094553 3300026078 Bacteria 2624
49 Ga0307517_10003847 3300028786 Bacteria 23277
50 Ga0316177_1045912 3300030731 Bacteria 1536
51 Ga0307513_10000001 3300031456 Bacteria 1660464
52 Ga0307508_10003791 3300031616 Bacteria 15104
53 Ga0307508_10196722 3300031616 Bacteria 1617
54 Ga0307518_10001182 3300031838 Bacteria 19605
55 Ga0307507_10017533 3300033179 Bacteria 8216
56 Ga0307510_10016526 3300033180 Bacteria 8709
57 Ga0373956_0000750 3300035119 Bacteria 13404
58 Ga0436364_0769832 3300037853 Bacteria 3350
59 Ga0436364_0971903 3300037853 Bacteria 128436
60 Ga0436365_0553183 3300039437 Bacteria 6008
61 Ga0436360_0405004 3300039438 Bacteria 3515
62 Ga0439436_0002400 3300041404 Bacteria 5617
63 Ga0439439_0008253 3300041406 Bacteria 2454
64 Ga0439449_0008095 3300042007 Bacteria 3993
65 Ga0439457_003453 3300042014 Bacteria 4299
66 Ga0450907_010894 3300042146 Bacteria 1510
67 Ga0466969_0002084 3300044656 Bacteria 10678
68 Ga0466969_0007631 3300044656 Bacteria 5749
69 Ga0466972_0011752 3300044658 Bacteria 4396
70 Ga0466972_0017842 3300044658 Bacteria 3551
71 Ga0466965_0001746 3300044683 Bacteria 8969
72 Ga0466965_0027229 3300044683 Bacteria 2773
73 Ga0466965_0034112 3300044683 Bacteria 2489
74 Ga0466966_0115861 3300044684 Bacteria 1649
75 Ga0466961_0015554 3300044693 Bacteria 4883
76 Ga0466963_0001129 3300044694 Bacteria 13930
77 Ga0466971_0000501 3300044719 Bacteria 15356
78 Ga0466968_0000276 3300044735 Bacteria 16350
79 Ga0466968_0010940 3300044735 Bacteria 3526
80 Ga0466970_0028535 3300044765 Bacteria 2933
81 Ga0466960_0007546 3300044901 Bacteria 4424
82 Ga0466960_0051686 3300044901 Bacteria 1986
83 Ga0466959_0001990 3300045049 Bacteria 12880
84 Ga0466958_0000046 3300045836 Bacteria 36245
85 Ga0466958_0071086 3300045836 Bacteria 2130
86 Ga0466958_0216942 3300045836 Bacteria 1220
87 Ga0466967_0018692 3300045976 Bacteria 5548
88 Ga0466967_0072715 3300045976 Bacteria 3083
89 Ga0495627_038720 3300046453 Bacteria 1473
90 Ga0495592_0114543 3300046454 Bacteria 1904
91 Ga0495651_0001487 3300046462 Bacteria 18134
92 Ga0495651_0008991 3300046462 Bacteria 7668
93 Ga0495651_0112274 3300046462 Bacteria 2014
94 Ga0495662_0079890 3300046476 Bacteria 1590
95 Ga0495618_0013694 3300046514 Bacteria 4935
96 Ga0495628_0087272 3300046516 Bacteria 2419
97 Ga0495643_0002247 3300046522 Bacteria 15681
98 Ga0495652_0001715 3300046529 Bacteria 23615
99 Ga0495645_0039186 3300046543 Bacteria 3457
100 Ga0495635_0019194 3300046663 Bacteria 4770
101 Ga0495588_0099075 3300046674 Bacteria 1531
102 Ga0495613_0120059 3300046689 Bacteria 1888
103 Ga0495600_0026930 3300046809 Bacteria 3714
104 Ga0495600_0037144 3300046809 Bacteria 3166
105 Ga0495636_0068237 3300047318 Bacteria 1514
106 Ga0495685_002529 3300047447 Bacteria 5741
107 Ga0495615_0007338 3300048090 Bacteria 2088
108 Ga0496108_0000013 3300048911 Bacteria 249814
109 Ga0496117_0077999 3300048920 Bacteria 2189
110 Ga0496119_0004271 3300048922 Bacteria 14317
111 Ga0496119_0100314 3300048922 Bacteria 1626
112 Ga0496120_0001706 3300048923 Bacteria 25132
113 Ga0496121_0003574 3300048924 Bacteria 21974
114 Ga0501037_0062430 3300049573 Bacteria 2716
115 Ga0501047_0000056 3300049581 Bacteria 143501
116 Ga0495601_0005837 3300053077 Bacteria 7181
117 Ga0495612_0074745 3300053078 Bacteria 1417
118 Ga0500553_019019 3300053101 Bacteria 3480
119 Ga0500658_0046390 3300053134 Bacteria 1759
120 Ga0500573_0054229 3300053140 Bacteria 2302
121 Ga0466962_0000303 3300061719 Bacteria 21120
122 Ga0466962_0002021 3300061719 Bacteria 9575

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300045836 Ga0466958_0216942 Ga0466958_0216942_45_1202 382
2 iso_pu_bacteria 2862382967 2862389152 386
3 3300044658 Ga0466972_0017842 Ga0466972_0017842_1065_2480 419
4 3300033180 Ga0307510_10016526 Ga0307510_100165264 420
5 3300046476 Ga0495662_0079890 Ga0495662_0079890_11_1279 420
6 3300033179 Ga0307507_10017533 Ga0307507_100175336 428
7 3300049573 Ga0501037_0062430 Ga0501037_0062430_1397_2698 430
8 3300044694 Ga0466963_0001129 Ga0466963_0001129_12474_13889 431
9 3300045049 Ga0466959_0001990 Ga0466959_0001990_41_1456 431
10 3300045836 Ga0466958_0071086 Ga0466958_0071086_32_1342 431
11 3300046453 Ga0495627_038720 Ga0495627_038720_38_1339 431
12 3300046522 Ga0495643_0002247 Ga0495643_0002247_11730_13031 431
13 3300046689 Ga0495613_0120059 Ga0495613_0120059_281_1582 431
14 3300047447 Ga0495685_002529 Ga0495685_002529_658_1959 431
15 3300053078 Ga0495612_0074745 Ga0495612_0074745_12_1322 431
16 3300053134 Ga0500658_0046390 Ga0500658_0046390_203_1504 431
17 3300026075 Ga0207708_10182703 Ga0207708_101827032 432
18 3300039438 Ga0436360_0405004 Ga0436360_0405004_561_1958 438
19 iso_pu_bacteria 2891395885 2891396538 439
20 iso_pu_bacteria 2891554331 2891555808 439
21 3300005435 Ga0070714_100099469 Ga0070714_1000994692 443
22 3300031838 Ga0307518_10001182 Ga0307518_1000118214 444
23 3300046543 Ga0495645_0039186 Ga0495645_0039186_1350_2753 444
24 3300046663 Ga0495635_0019194 Ga0495635_0019194_443_1846 444
25 3300046809 Ga0495600_0037144 Ga0495600_0037144_1022_2425 444
26 3300053140 Ga0500573_0054229 Ga0500573_0054229_51_1457 444
27 3300005435 Ga0070714_100013864 Ga0070714_1000138645 445
28 3300005436 Ga0070713_100056706 Ga0070713_1000567063 445
29 3300025928 Ga0207700_10080534 Ga0207700_100805342 445
30 3300025929 Ga0207664_10029776 Ga0207664_100297763 445
31 3300048911 Ga0496108_0000013 Ga0496108_0000013_40183_41577 446
32 iso_pu_bacteria 2891562705 2891567885 446
33 3300006028 Ga0070717_10004985 Ga0070717_1000498510 452
34 iso_pu_bacteria 2867369537 2867375183 453
35 iso_pu_bacteria 2775506925 2776372256 456
36 iso_pu_bacteria 2863067949 2863075252 456
37 iso_pu_bacteria 8056207758 8056210281 456
38 3300035119 Ga0373956_0000750 Ga0373956_0000750_11493_12902 457
39 iso_pu_bacteria 2891326441 2891330043 457
40 iso_pu_bacteria 2870782633 2870787037 458
41 iso_pu_bacteria 2895427314 2895431972 459
42 3300044656 Ga0466969_0002084 Ga0466969_0002084_763_2160 460
43 3300044656 Ga0466969_0007631 Ga0466969_0007631_2094_3491 460
44 3300044684 Ga0466966_0115861 Ga0466966_0115861_34_1431 460
45 3300044693 Ga0466961_0015554 Ga0466961_0015554_3393_4790 460
46 3300044719 Ga0466971_0000501 Ga0466971_0000501_3237_4634 460
47 3300044765 Ga0466970_0028535 Ga0466970_0028535_51_1448 460
48 3300061719 Ga0466962_0000303 Ga0466962_0000303_8567_9964 460
49 iso_pu_bacteria 2558860112 2558912164 460
50 iso_pu_bacteria 8047710418 8047710877 460
51 3300005435 Ga0070714_100013864 Ga0070714_1000138644 461
52 3300006028 Ga0070717_10116953 Ga0070717_101169531 461
53 3300025929 Ga0207664_10029776 Ga0207664_100297762 461
54 3300045836 Ga0466958_0000046 Ga0466958_0000046_10103_11617 461
55 3300045976 Ga0466967_0072715 Ga0466967_0072715_1286_2800 461
56 3300061719 Ga0466962_0002021 Ga0466962_0002021_3912_5426 461
57 3300045976 Ga0466967_0018692 Ga0466967_0018692_2838_4232 462
58 3300046462 Ga0495651_0008991 Ga0495651_0008991_5167_6570 462
59 3300046514 Ga0495618_0013694 Ga0495618_0013694_2294_3697 462
60 3300053077 Ga0495601_0005837 Ga0495601_0005837_838_2241 462
61 iso_pu_bacteria 2643221692 2644516447 462
62 iso_pu_bacteria 2687453743 2689994554 462
63 iso_pu_bacteria 2912757875 2912763308 462
64 3300025972 Ga0207668_10052021 Ga0207668_100520211 463
65 iso_pu_bacteria 2506783011 2506868058 463
66 iso_pu_bacteria 2527291627 2528205915 463
67 iso_pu_bacteria 2527291629 2528215070 463
68 iso_pu_bacteria 2546825537 2546948724 463
69 iso_pu_bacteria 2576861822 2579750248 463
70 iso_pu_bacteria 2684623036 2686540629 463
71 iso_pu_bacteria 2710264753 2710604869 463
72 iso_pu_bacteria 2773857924 2774867672 463
73 iso_pu_bacteria 2773857933 2774905653 463
74 iso_pu_bacteria 2866552031 2866554990 463
75 iso_pu_bacteria 2886627955 2886630475 463
76 iso_pu_bacteria 2913939268 2913943560 463
77 iso_pu_bacteria 637000116 637881556 463
78 iso_pu_bacteria 8055157932 8055159358 463
79 3300037853 Ga0436364_0971903 Ga0436364_0971903_26652_28184 464
80 3300039437 Ga0436365_0553183 Ga0436365_0553183_2564_4096 464
81 3300046454 Ga0495592_0114543 Ga0495592_0114543_347_1780 464
82 3300046462 Ga0495651_0001487 Ga0495651_0001487_11186_12619 464
83 3300046516 Ga0495628_0087272 Ga0495628_0087272_888_2321 464
84 3300046529 Ga0495652_0001715 Ga0495652_0001715_19253_20686 464
85 3300046809 Ga0495600_0026930 Ga0495600_0026930_2210_3643 464
86 iso_pu_bacteria 2617270889 2617912759 464
87 iso_pu_bacteria 2867346516 2867346761 464
88 iso_pu_bacteria 2913844669 2913852027 464
89 iso_pu_bacteria 2997451912 2997452018 464
90 iso_pu_bacteria 2997600082 2997602538 464
91 iso_pu_bacteria 642555144 642601851 464
92 iso_pu_bacteria 8048127548 8048135381 464
93 iso_pu_bacteria 8048356638 8048364857 464
94 iso_pu_bacteria 8048369669 8048370859 464
95 iso_pu_bacteria 8048379754 8048388563 464
96 3300030731 Ga0316177_1045912 Ga0316177_10459121 465
97 3300044658 Ga0466972_0011752 Ga0466972_0011752_42_1442 465
98 3300044683 Ga0466965_0001746 Ga0466965_0001746_1121_2521 465
99 3300044683 Ga0466965_0027229 Ga0466965_0027229_238_1638 465
100 3300044683 Ga0466965_0034112 Ga0466965_0034112_959_2359 465
101 3300044735 Ga0466968_0010940 Ga0466968_0010940_731_2131 465
102 3300044901 Ga0466960_0007546 Ga0466960_0007546_1230_2630 465
103 3300047318 Ga0495636_0068237 Ga0495636_0068237_77_1483 465
104 3300048090 Ga0495615_0007338 Ga0495615_0007338_210_1616 465
105 3300049581 Ga0501047_0000056 Ga0501047_0000056_72257_73678 465
106 iso_pu_bacteria 2867475112 2867477573 465
107 3300005327 Ga0070658_10154356 Ga0070658_101543561 466
108 3300005539 Ga0068853_100139865 Ga0068853_1001398652 466
109 3300005548 Ga0070665_100028149 Ga0070665_1000281494 466
110 3300005563 Ga0068855_100007437 Ga0068855_1000074371 466
111 3300005614 Ga0068856_100123032 Ga0068856_1001230322 466
112 3300009093 Ga0105240_10041060 Ga0105240_100410602 466
113 3300009174 Ga0105241_10001210 Ga0105241_100012105 466
114 3300009545 Ga0105237_10043135 Ga0105237_100431352 466
115 3300013296 Ga0157374_10103806 Ga0157374_101038061 466
116 3300020069 Ga0197907_10768831 Ga0197907_107688311 466
117 3300020070 Ga0206356_11061856 Ga0206356_110618561 466
118 3300020078 Ga0206352_10861308 Ga0206352_108613081 466
119 3300020080 Ga0206350_10076506 Ga0206350_100765061 466
120 3300022467 Ga0224712_10011971 Ga0224712_100119711 466
121 3300025904 Ga0207647_10034052 Ga0207647_100340521 466
122 3300025913 Ga0207695_10038806 Ga0207695_100388064 466
123 3300025914 Ga0207671_10000488 Ga0207671_1000048816 466
124 3300025924 Ga0207694_10012003 Ga0207694_100120032 466
125 3300025949 Ga0207667_10129937 Ga0207667_101299372 466
126 3300025981 Ga0207640_10097793 Ga0207640_100977931 466
127 3300026078 Ga0207702_10094553 Ga0207702_100945532 466
128 3300031616 Ga0307508_10196722 Ga0307508_101967221 466
129 3300044735 Ga0466968_0000276 Ga0466968_0000276_4359_5894 466
130 3300046462 Ga0495651_0112274 Ga0495651_0112274_140_1585 466
131 iso_pu_bacteria 2585427649 2586061039 466
132 iso_pu_bacteria 2671180195 2671836287 466
133 iso_pu_bacteria 2675902999 2676199236 466
134 iso_pu_bacteria 2684623035 2686535653 466
135 iso_pu_bacteria 2773857921 2774843814 466
136 iso_pu_bacteria 2773857922 2774854443 466
137 iso_pu_bacteria 2808606522 2809589925 466
138 iso_pu_bacteria 2895880812 2895885409 466
139 iso_pu_bacteria 2915768154 2915769168 466
140 iso_pu_bacteria 8002775197 8002775871 466
141 3300005617 Ga0068859_100064392 Ga0068859_1000643923 467
142 3300005842 Ga0068858_100000152 Ga0068858_10000015230 467
143 3300006931 Ga0097620_100064391 Ga0097620_1000643912 467
144 3300025900 Ga0207710_10000168 Ga0207710_100001687 467
145 3300026035 Ga0207703_10000181 Ga0207703_1000018128 467
146 3300031456 Ga0307513_10000001 Ga0307513_10000001858 467
147 3300037853 Ga0436364_0769832 Ga0436364_0769832_1434_2846 467
148 iso_pu_bacteria 2579778521 2579858025 467
149 iso_pu_bacteria 2619618881 2619854879 467
150 iso_pu_bacteria 2619619003 2620353753 467
151 iso_pu_bacteria 2626541554 2626639988 467
152 3300006028 Ga0070717_10035017 Ga0070717_100350173 468
153 3300025302 Ga0207426_1000533 Ga0207426_100053315 468
154 3300025302 Ga0207426_1001103 Ga0207426_100110312 468
155 3300031616 Ga0307508_10003791 Ga0307508_100037916 468
156 iso_pu_bacteria 8054920844 8054921939 468
157 3300009101 Ga0105247_10003289 Ga0105247_100032891 469
158 3300014968 Ga0157379_10000543 Ga0157379_100005431 469
159 3300048922 Ga0496119_0100314 Ga0496119_0100314_155_1573 469
160 3300048924 Ga0496121_0003574 Ga0496121_0003574_9748_11166 469
161 iso_pu_bacteria 8056829672 8056836750 469
162 3300028786 Ga0307517_10003847 Ga0307517_100038479 470
163 3300046674 Ga0495588_0099075 Ga0495588_0099075_86_1504 470
164 3300053101 Ga0500553_019019 Ga0500553_019019_1426_2844 470
165 iso_pu_bacteria 8056054917 8056058750 470
166 3300009101 Ga0105247_10000262 Ga0105247_1000026227 471
167 3300009177 Ga0105248_10009655 Ga0105248_100096555 471
168 3300014968 Ga0157379_10018415 Ga0157379_100184152 471
169 3300021384 Ga0213876_10011886 Ga0213876_100118862 471
170 3300021388 Ga0213875_10000333 Ga0213875_1000033314 471
171 3300025900 Ga0207710_10000040 Ga0207710_1000004022 471
172 3300025941 Ga0207711_10013139 Ga0207711_100131395 471
173 3300048922 Ga0496119_0004271 Ga0496119_0004271_12853_14271 471
174 3300048923 Ga0496120_0001706 Ga0496120_0001706_23637_25055 471
175 3300048920 Ga0496117_0077999 Ga0496117_0077999_641_2089 472
176 3300003320 rootH2_10147786 rootH2_101477862 473
177 3300041404 Ga0439436_0002400 Ga0439436_0002400_1857_3281 473
178 3300041406 Ga0439439_0008253 Ga0439439_0008253_107_1531 473
179 3300042007 Ga0439449_0008095 Ga0439449_0008095_186_1610 473
180 3300042014 Ga0439457_003453 Ga0439457_003453_1206_2630 473
181 3300042146 Ga0450907_010894 Ga0450907_010894_72_1496 473
182 3300044901 Ga0466960_0051686 Ga0466960_0051686_234_1670 473
183 iso_pu_bacteria 8054160619 8054163251 473

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF19307

SrpI-like

Type 2A encapsulin shell protein SrpI-like

232

486

0.99

PF00027

cNMP_binding

Cyclic nucleotide-binding domain

129

218

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
3plq-assembly1.cif.gz_A crystal structure of pka type i regulatory subunit bound with rp-8-br-camps 0.9098 96 207
6x8m-assembly1.cif.gz_A cryoem structure of the holo-srpi encapsulin complex from synechococcus elongatus pcc 7942 0.9044 29 473
6cjt-assembly1.cif.gz_A structure of the sthk cyclic nucleotide-gated potassium channel in complex with cgmp 0.8891 99 216
5c8w-assembly6.cif.gz_F pkg ii's amino terminal cyclic nucleotide binding domain (cnb-a) in a complex with cgmp 0.8887 93 208
5jr7-assembly2.cif.gz_D crystal structure of an acrdys heterodimer [ria(92-365):c] of pka 0.8853 93 209
ID Description Score Start End Superfamily
4wbbA02 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.9319 99 206 2.60.120.10
af_Q8I719_160_276_2.60.120.10 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.9292 105 206 2.60.120.10
af_O76360_174_305_2.60.120.10 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.9157 102 211 2.60.120.10
af_Q61410_136_272_2.60.120.10 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.8973 93 211 2.60.120.10
3of1A01 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.8951 107 204 2.60.120.10
ID Description Score Start End GO Terms
AF-A0A830HC67-F1-model_v4 Calmodulin 0.9136 93 208 GO:0005509
GO:0005829
AF-A0A0M3GSG2-F1-model_v4 deleted 0.8964 96 223
AF-A0A520Y4W7-F1-model_v4 Cyclic nucleotide-binding domain-containing protein 0.894 118 199 GO:0016137
GO:0016811
AF-A0A847F1G5-F1-model_v4 Cyclic nucleotide-binding domain-containing protein 0.8908 93 216
AF-A0A7V6CC55-F1-model_v4 Cyclic nucleotide-binding domain-containing protein 0.8877 102 199 GO:0004862
GO:0005829
GO:0005952
GO:0030552
GO:0034236

Feature Viewer

pLDDT pTM Quality
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Predicted Structure (AlphaFold2)

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