F280847

General Info

Members Datasets Scaffolds Average Seq Length
183 116 163 378

Family's Representative Sequence

Representative Sequence 3300013104|Ga0157370_10001266|Ga0157370_1000126630
Length 433
Sequence MKIIHITASYKPAYIYGGPIQSVGRLCEVLSDSKLSRVLREGILVCVKDDKPLTLDDKSSAQYGKCIEVEVITTTANGANELDVKIGEPVFVEGVQVSYFKRLTKDHSHFSPGLLWGLRKEILRYSKDNNNIKIPKLQAPNSKLIIHIHAWWNLVSVLSCLIAKWYRIPVTLSPRGMLTSYTLGNRNSISKKLIHKLLGKNLLQYCHVHATSEQEKADILKIVTPKSIRVVPNLVSLPLEKHDPKSPASISENQAEGYFKIIFLSRIEEKKGLEVLFNALATVDIPWKLTIAGSGEEQYLQDLKLLTNKLKLSDNIYWIGQVSNEDKYTLIAAHDLLVLTSYNENFANVVVESLSVGTPVLISEYVGLADYVKDNELGWVTNLEIAEIKNNIIFAYQNPEKRQNIRNTAPSTIREDFNDDVLANRYLEFYKTL

Samples

Sample ID Description Type Environment
1 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
2 2738541283 Pedobacter sp. OK701 Isolate Unclassified
3 2738541284 Pedobacter sp. YR016 Isolate Unclassified
4 2738541302 Pedobacter sp. CF074 Isolate Unclassified
5 2738543023 Pedobacter sp. OK628 Isolate Unclassified
6 2739367651 Pedobacter sp. OK291 Isolate Unclassified
7 2739367656 Pedobacter sp. CF523 Isolate Unclassified
8 2739367663 Pedobacter sp. YR510 Isolate Unclassified
9 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
10 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
11 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
12 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
13 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
14 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
15 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
16 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
17 2911138879 Spirosoma sp. KUDC1026 Isolate Rhizosphere
18 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
19 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
20 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
21 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
22 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
23 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
24 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
25 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
26 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
27 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
28 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
29 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
30 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
31 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
32 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
33 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
34 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
35 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
36 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
37 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
38 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
39 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
40 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
41 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
42 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
43 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
44 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
45 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
46 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
47 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
48 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
49 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
50 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
51 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
52 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
53 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
54 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
55 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
56 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
57 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
58 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
59 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
60 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
61 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
62 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
63 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
64 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
65 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
66 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
67 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
68 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
69 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
89 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
90 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
91 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
92 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
93 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
94 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
95 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
96 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
97 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
98 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
99 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
100 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
101 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
102 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
103 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
104 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
105 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
106 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
107 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
108 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
109 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
110 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
111 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
112 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
113 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
114 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
115 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
116 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.07
Metatranscriptomes 0
Isolates 10.93

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.29
Nodule 0
Rhizoplane 0
Rhizosphere 76.5
Stem 0
Stem Tuber 0
Unclassified 14.21

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25162J39368_1001024 3300002737 Bacteria 17293
2 JGI25164J39214_1001274 3300002772 Bacteria 6499
3 JGI25165J46597_1000995 3300003214 Bacteria 18835
4 rootH1_10018616 3300003316 Bacteria 5902
5 rootH1_10020301 3300003316 Bacteria 7251
6 rootH2_10002321 3300003320 Bacteria 110257
7 rootH2_10063779 3300003320 Bacteria 20382
8 rootH2_10107823 3300003320 Bacteria 1982
9 rootH2_10266304 3300003320 Unclassified 3240
10 rootL2_10073720 3300003322 Bacteria 5506
11 rootL2_10139201 3300003322 Bacteria 5659
12 rootH1_10073596 3300003323 Bacteria 6101
13 rootH1_10170134 3300003323 Bacteria 15889
14 Ga0055536_1000024 3300003781 Bacteria 185534
15 Ga0055530_10001039 3300003791 Bacteria 22138
16 Ga0065714_10068335 3300005288 Bacteria 4787
17 Ga0065704_10134711 3300005289 Bacteria 1585
18 Ga0070658_10000301 3300005327 Bacteria 42860
19 Ga0070676_10000362 3300005328 Bacteria 20809
20 Ga0068868_100051585 3300005338 Unclassified 3237
21 Ga0070674_100138057 3300005356 Bacteria 1826
22 Ga0070678_100003311 3300005456 Bacteria 8958
23 Ga0068867_100001115 3300005459 Bacteria 18389
24 Ga0068853_100005336 3300005539 Bacteria 10062
25 Ga0070665_100000010 3300005548 Bacteria 529545
26 Ga0068855_100000098 3300005563 Bacteria 105977
27 Ga0068855_100002259 3300005563 Bacteria 23782
28 Ga0068855_100027365 3300005563 Bacteria 6821
29 Ga0068855_100046014 3300005563 Bacteria 5159
30 Ga0068857_100127641 3300005577 Unclassified 2292
31 Ga0068856_100000006 3300005614 Bacteria 223827
32 Ga0068856_100001243 3300005614 Bacteria 26769
33 Ga0068856_100055107 3300005614 Unclassified 3924
34 Ga0068856_100362817 3300005614 Bacteria 1467
35 Ga0068852_100002461 3300005616 Bacteria 12747
36 Ga0068852_100088741 3300005616 Bacteria 2762
37 Ga0075366_10000492 3300006195 Bacteria 18283
38 Ga0097621_100000011 3300006237 Bacteria 111116
39 Ga0075370_10123490 3300006353 Bacteria 1508
40 Ga0068871_100000323 3300006358 Bacteria 33311
41 Ga0068865_100000128 3300006881 Bacteria 39251
42 Ga0105240_10010258 3300009093 Bacteria 13188
43 Ga0105240_10011030 3300009093 Bacteria 12638
44 Ga0105240_10093289 3300009093 Bacteria 3675
45 Ga0105240_10472543 3300009093 Unclassified 1399
46 Ga0105241_10000504 3300009174 Bacteria 29406
47 Ga0105241_10027970 3300009174 Bacteria 4199
48 Ga0105241_10277156 3300009174 Unclassified 1431
49 Ga0105237_10000247 3300009545 Bacteria 76464
50 Ga0105237_10000456 3300009545 Bacteria 57925
51 Ga0105237_10003934 3300009545 Bacteria 17398
52 Ga0105239_10000015 3300010375 Bacteria 319892
53 Ga0105239_10006988 3300010375 Bacteria 13004
54 Ga0105239_10014678 3300010375 Bacteria 8687
55 Ga0157373_10006279 3300013100 Bacteria 8881
56 Ga0157373_10045398 3300013100 Bacteria 3136
57 Ga0157373_10053149 3300013100 Bacteria 2880
58 Ga0157371_10016318 3300013102 Bacteria 5547
59 Ga0157370_10000472 3300013104 Bacteria 50203
60 Ga0157370_10001266 3300013104 Bacteria 31553
61 Ga0157370_10001399 3300013104 Bacteria 29911
62 Ga0157370_10002368 3300013104 Bacteria 22717
63 Ga0157370_10003245 3300013104 Bacteria 19171
64 Ga0157370_10005939 3300013104 Bacteria 13603
65 Ga0157370_10019299 3300013104 Bacteria 6843
66 Ga0157370_10037121 3300013104 Bacteria 4724
67 Ga0157370_10054847 3300013104 Bacteria 3799
68 Ga0157370_10113490 3300013104 Bacteria 2532
69 Ga0157369_10000007 3300013105 Bacteria 402562
70 Ga0157369_10000555 3300013105 Bacteria 49015
71 Ga0157369_10073355 3300013105 Unclassified 3672
72 Ga0157374_10000643 3300013296 Bacteria 30783
73 Ga0157374_10007568 3300013296 Bacteria 9270
74 Ga0157374_10032703 3300013296 Bacteria 4738
75 Ga0163162_10000099 3300013306 Bacteria 78696
76 Ga0163162_10007703 3300013306 Bacteria 10491
77 Ga0163162_10045575 3300013306 Bacteria 4393
78 Ga0163162_10046629 3300013306 Unclassified 4344
79 Ga0157375_10008900 3300013308 Bacteria 8787
80 Ga0157375_10107774 3300013308 Bacteria 2880
81 Ga0157375_10345395 3300013308 Bacteria 1654
82 Ga0182008_10000006 3300014497 Bacteria 378521
83 Ga0182008_10001185 3300014497 Bacteria 17968
84 Ga0157376_10104712 3300014969 Unclassified 2480
85 Ga0182006_1000945 3300015261 Bacteria 19365
86 Ga0182006_1001061 3300015261 Bacteria 17700
87 Ga0182006_1025903 3300015261 Bacteria 2406
88 Ga0182007_10000065 3300015262 Bacteria 85433
89 Ga0183373_1001 3300015682 Bacteria 1410374
90 Ga0163161_10000147 3300017792 Bacteria 64299
91 Ga0163161_10000287 3300017792 Bacteria 44102
92 Ga0163161_10000337 3300017792 Bacteria 39961
93 Ga0163161_10000864 3300017792 Bacteria 23630
94 Ga0207427_100113 3300025231 Bacteria 107320
95 Ga0209437_100010 3300025233 Bacteria 838447
96 Ga0209233_1000017 3300025261 Bacteria 898076
97 Ga0209455_1005174 3300025272 Unclassified 4092
98 Ga0209676_1000008 3300025292 Bacteria 991778
99 Ga0209050_1000055 3300025298 Bacteria 339254
100 Ga0207647_10000641 3300025904 Bacteria 27308
101 Ga0207645_10001718 3300025907 Bacteria 17779
102 Ga0207705_10000336 3300025909 Bacteria 42484
103 Ga0207654_10081599 3300025911 Bacteria 1948
104 Ga0207695_10006565 3300025913 Bacteria 15056
105 Ga0207695_10042590 3300025913 Bacteria 4846
106 Ga0207695_10146852 3300025913 Unclassified 2301
107 Ga0207671_10000441 3300025914 Bacteria 57099
108 Ga0207671_10009061 3300025914 Bacteria 8366
109 Ga0207671_10024206 3300025914 Bacteria 4569
110 Ga0207686_10015535 3300025934 Unclassified 4258
111 Ga0207669_10143949 3300025937 Bacteria 1659
112 Ga0207704_10000019 3300025938 Bacteria 152734
113 Ga0207667_10000014 3300025949 Bacteria 421261
114 Ga0207667_10001944 3300025949 Bacteria 25894
115 Ga0207667_10012520 3300025949 Bacteria 9764
116 Ga0207677_10040541 3300026023 Unclassified 3071
117 Ga0207702_10000023 3300026078 Bacteria 189234
118 Ga0207702_10016172 3300026078 Bacteria 6178
119 Ga0207702_10069685 3300026078 Unclassified 3024
120 Ga0207648_10000061 3300026089 Bacteria 101034
121 Ga0207683_10004385 3300026121 Bacteria 12193
122 Ga0207698_10039449 3300026142 Unclassified 3499
123 Ga0268266_10000032 3300028379 Bacteria 395079
124 Ga0307515_10000643 3300028794 Bacteria 80674
125 Ga0307515_10004205 3300028794 Bacteria 29953
126 Ga0307515_10056309 3300028794 Bacteria 5718
127 Ga0265338_10012833 3300028800 Bacteria 9523
128 Ga0307408_100002090 3300031548 Bacteria 14384
129 Ga0307405_10000003 3300031731 Bacteria 569064
130 Ga0307407_10000020 3300031903 Bacteria 126218
131 Ga0307416_100000042 3300032002 Bacteria 130512
132 Ga0307414_10053442 3300032004 Bacteria 2817
133 Ga0307414_10081640 3300032004 Bacteria 2368
134 Ga0307507_10000502 3300033179 Bacteria 82354
135 Ga0373941_0001850 3300035115 Bacteria 4566
136 Ga0395900_0000541 3300037418 Bacteria 52877
137 Ga0395900_0004918 3300037418 Bacteria 14068
138 Ga0395900_0047362 3300037418 Bacteria 4426
139 Ga0395900_0085855 3300037418 Bacteria 3234
140 Ga0395898_0312450 3300037466 Bacteria 1499
141 Ga0395905_0000462 3300037471 Bacteria 56533
142 Ga0395905_0000977 3300037471 Bacteria 36694
143 Ga0395905_0060009 3300037471 Bacteria 3556
144 Ga0395901_0285392 3300038443 Bacteria 1714
145 Ga0436361_0589614 3300039447 Bacteria 2383
146 Ga0495585_0032253 3300046492 Bacteria 2968
147 Ga0495610_0000051 3300046512 Bacteria 143715
148 Ga0495610_0000314 3300046512 Bacteria 51348
149 Ga0495610_0027753 3300046512 Bacteria 3003
150 Ga0495644_0005328 3300046523 Bacteria 5022
151 Ga0495642_0076420 3300046528 Bacteria 1406
152 Ga0495633_0000026 3300046558 Bacteria 204722
153 Ga0495668_0000122 3300046616 Bacteria 115217
154 Ga0495625_0001221 3300046660 Bacteria 32622
155 Ga0495687_009601 3300047443 Bacteria 5389
156 Ga0495686_0000071 3300047472 Bacteria 216594
157 Ga0495686_0175735 3300047472 Bacteria 1243
158 Ga0496122_0002455 3300048925 Bacteria 26237
159 Ga0496123_0004452 3300048926 Bacteria 14719
160 nmdc:mga0k408_22_c2 3300050493 Bacteria 93033
161 Ga0500651_0000256 3300053093 Bacteria 32006
162 Ga0500608_011369 3300053122 Bacteria 3862
163 Ga0500618_000010 3300053125 Bacteria 203909

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300038443 Ga0395901_0285392 Ga0395901_0285392_20_973 317
2 3300013102 Ga0157371_10016318 Ga0157371_100163182 341
3 3300013105 Ga0157369_10073355 Ga0157369_100733553 341
4 3300017792 Ga0163161_10000147 Ga0163161_1000014747 343
5 3300009174 Ga0105241_10000504 Ga0105241_1000050410 344
6 3300010375 Ga0105239_10006988 Ga0105239_1000698811 344
7 3300025911 Ga0207654_10081599 Ga0207654_100815993 344
8 3300005338 Ga0068868_100051585 Ga0068868_1000515852 350
9 3300005614 Ga0068856_100001243 Ga0068856_10000124311 350
10 3300009545 Ga0105237_10000456 Ga0105237_1000045622 350
11 3300013296 Ga0157374_10000643 Ga0157374_1000064321 350
12 3300014969 Ga0157376_10104712 Ga0157376_101047122 350
13 3300025914 Ga0207671_10024206 Ga0207671_100242062 350
14 3300026023 Ga0207677_10040541 Ga0207677_100405412 350
15 3300026078 Ga0207702_10016172 Ga0207702_100161724 350
16 3300031731 Ga0307405_10000003 Ga0307405_10000003448 350
17 3300009093 Ga0105240_10472543 Ga0105240_104725431 353
18 3300028800 Ga0265338_10012833 Ga0265338_100128332 354
19 3300039447 Ga0436361_0589614 Ga0436361_0589614_917_1996 354
20 3300046492 Ga0495585_0032253 Ga0495585_0032253_1890_2957 355
21 3300028794 Ga0307515_10056309 Ga0307515_100563093 356
22 3300005577 Ga0068857_100127641 Ga0068857_1001276412 357
23 3300005614 Ga0068856_100362817 Ga0068856_1003628171 357
24 3300003320 rootH2_10266304 rootH2_102663043 358
25 3300003323 rootH1_10073596 rootH1_100735966 358
26 3300005614 Ga0068856_100055107 Ga0068856_1000551074 358
27 3300009093 Ga0105240_10010258 Ga0105240_100102583 358
28 3300013306 Ga0163162_10045575 Ga0163162_100455753 358
29 3300025913 Ga0207695_10146852 Ga0207695_101468523 358
30 3300025914 Ga0207671_10000441 Ga0207671_1000044133 358
31 3300026078 Ga0207702_10069685 Ga0207702_100696852 358
32 3300046523 Ga0495644_0005328 Ga0495644_0005328_3272_4348 358
33 3300046528 Ga0495642_0076420 Ga0495642_0076420_250_1326 358
34 3300047472 Ga0495686_0175735 Ga0495686_0175735_77_1153 358
35 3300002772 JGI25164J39214_1001274 JGI25164J39214_10012744 359
36 3300003322 rootL2_10139201 rootL2_101392013 359
37 3300003323 rootH1_10170134 rootH1_101701341 359
38 3300005327 Ga0070658_10000301 Ga0070658_100003016 359
39 3300006195 Ga0075366_10000492 Ga0075366_1000049217 359
40 3300006353 Ga0075370_10123490 Ga0075370_101234902 359
41 3300013296 Ga0157374_10032703 Ga0157374_100327032 359
42 3300013308 Ga0157375_10008900 Ga0157375_100089007 359
43 3300013308 Ga0157375_10107774 Ga0157375_101077742 359
44 3300017792 Ga0163161_10000287 Ga0163161_1000028741 359
45 3300028794 Ga0307515_10000643 Ga0307515_1000064349 359
46 3300028794 Ga0307515_10004205 Ga0307515_1000420516 359
47 3300031548 Ga0307408_100002090 Ga0307408_1000020906 359
48 3300033179 Ga0307507_10000502 Ga0307507_1000050221 359
49 3300037418 Ga0395900_0047362 Ga0395900_0047362_116_1195 359
50 3300037418 Ga0395900_0085855 Ga0395900_0085855_2040_3119 359
51 3300037466 Ga0395898_0312450 Ga0395898_0312450_46_1125 359
52 3300037471 Ga0395905_0000977 Ga0395905_0000977_35528_36607 359
53 3300037471 Ga0395905_0060009 Ga0395905_0060009_2298_3377 359
54 3300046616 Ga0495668_0000122 Ga0495668_0000122_65025_66104 359
55 3300046660 Ga0495625_0001221 Ga0495625_0001221_20297_21376 359
56 3300047443 Ga0495687_009601 Ga0495687_009601_4072_5157 359
57 3300050493 nmdc:mga0k408_22_c2 nmdc:mga0k408_22_c2_2138_3217 359
58 3300053122 Ga0500608_011369 Ga0500608_011369_1260_2339 359
59 3300025934 Ga0207686_10015535 Ga0207686_100155352 362
60 3300009174 Ga0105241_10277156 Ga0105241_102771562 363
61 3300005539 Ga0068853_100005336 Ga0068853_10000533611 364
62 3300006237 Ga0097621_100000011 Ga0097621_10000001187 364
63 3300006358 Ga0068871_100000323 Ga0068871_10000032319 364
64 3300015261 Ga0182006_1025903 Ga0182006_10259032 366
65 3300032004 Ga0307414_10081640 Ga0307414_100816402 366
66 3300009545 Ga0105237_10003934 Ga0105237_100039342 368
67 3300013104 Ga0157370_10037121 Ga0157370_100371212 368
68 3300015261 Ga0182006_1000945 Ga0182006_10009455 368
69 3300017792 Ga0163161_10000864 Ga0163161_100008648 368
70 3300025914 Ga0207671_10009061 Ga0207671_100090618 368
71 3300048925 Ga0496122_0002455 Ga0496122_0002455_1737_2921 368
72 3300048926 Ga0496123_0004452 Ga0496123_0004452_3674_4858 368
73 iso_pu_bacteria 2911138879 2911143752 368
74 iso_pu_bacteria 2738541284 2738760240 369
75 3300005328 Ga0070676_10000362 Ga0070676_1000036211 370
76 3300005456 Ga0070678_100003311 Ga0070678_1000033114 370
77 3300005459 Ga0068867_100001115 Ga0068867_10000111517 370
78 3300005616 Ga0068852_100002461 Ga0068852_10000246113 370
79 3300013104 Ga0157370_10003245 Ga0157370_100032452 370
80 3300025907 Ga0207645_10001718 Ga0207645_100017186 370
81 3300026089 Ga0207648_10000061 Ga0207648_1000006134 370
82 3300026121 Ga0207683_10004385 Ga0207683_100043854 370
83 3300026142 Ga0207698_10039449 Ga0207698_100394495 370
84 3300013104 Ga0157370_10005939 Ga0157370_100059395 371
85 3300046512 Ga0495610_0000314 Ga0495610_0000314_4845_5993 371
86 3300053093 Ga0500651_0000256 Ga0500651_0000256_1312_2451 371
87 iso_pu_bacteria 2849281842 2849281948 371
88 3300014497 Ga0182008_10000006 Ga0182008_10000006159 372
89 3300032004 Ga0307414_10053442 Ga0307414_100534422 372
90 3300046512 Ga0495610_0000051 Ga0495610_0000051_422_1660 372
91 3300046512 Ga0495610_0027753 Ga0495610_0027753_21_1190 372
92 iso_pu_bacteria 2902048731 2902052259 372
93 3300005289 Ga0065704_10134711 Ga0065704_101347112 373
94 iso_pu_bacteria 2738541302 2738852172 373
95 iso_pu_bacteria 2857627736 2857629560 373
96 iso_pu_bacteria 2919437846 2919438073 373
97 3300003781 Ga0055536_1000024 Ga0055536_100002461 374
98 3300003791 Ga0055530_10001039 Ga0055530_1000103921 374
99 3300013308 Ga0157375_10345395 Ga0157375_103453952 374
100 3300025292 Ga0209676_1000008 Ga0209676_1000008210 374
101 3300025298 Ga0209050_1000055 Ga0209050_1000055202 374
102 iso_pu_bacteria 2738543023 2739302106 374
103 iso_pu_bacteria 2739367656 2739616425 374
104 iso_pu_bacteria 2904445276 2904446840 374
105 3300003316 rootH1_10020301 rootH1_100203012 375
106 3300003322 rootL2_10073720 rootL2_100737205 375
107 3300013100 Ga0157373_10006279 Ga0157373_100062795 375
108 3300013104 Ga0157370_10001266 Ga0157370_1000126630 375
109 3300013104 Ga0157370_10002368 Ga0157370_1000236818 375
110 3300015261 Ga0182006_1001061 Ga0182006_100106115 375
111 3300015682 Ga0183373_1001 Ga0183373_1001314 375
112 iso_pu_bacteria 2585427687 2586207882 375
113 iso_pu_bacteria 2738541283 2738756945 375
114 iso_pu_bacteria 2739367651 2739589628 375
115 iso_pu_bacteria 2739367663 2739647076 375
116 iso_pu_bacteria 2842722452 2842725416 375
117 iso_pu_bacteria 2842909656 2842912694 375
118 iso_pu_bacteria 2852623160 2852624562 375
119 iso_pu_bacteria 2884933994 2884936552 375
120 iso_pu_bacteria 2945997725 2946002338 375
121 iso_pu_bacteria 2954016120 2954019231 375
122 3300013100 Ga0157373_10053149 Ga0157373_100531492 376
123 3300013104 Ga0157370_10001399 Ga0157370_1000139928 376
124 3300017792 Ga0163161_10000337 Ga0163161_1000033723 376
125 3300053125 Ga0500618_000010 Ga0500618_000010_172552_173685 376
126 3300005356 Ga0070674_100138057 Ga0070674_1001380572 377
127 3300009174 Ga0105241_10027970 Ga0105241_100279703 377
128 3300010375 Ga0105239_10014678 Ga0105239_100146787 377
129 3300013100 Ga0157373_10045398 Ga0157373_100453982 377
130 3300013104 Ga0157370_10000472 Ga0157370_1000047211 377
131 3300013104 Ga0157370_10054847 Ga0157370_100548472 377
132 3300013105 Ga0157369_10000007 Ga0157369_1000000733 377
133 3300025272 Ga0209455_1005174 Ga0209455_10051743 377
134 3300025937 Ga0207669_10143949 Ga0207669_101439492 377
135 3300031903 Ga0307407_10000020 Ga0307407_1000002042 377
136 3300032002 Ga0307416_100000042 Ga0307416_10000004238 377
137 3300003320 rootH2_10063779 rootH2_1006377914 378
138 3300005548 Ga0070665_100000010 Ga0070665_100000010377 378
139 3300005563 Ga0068855_100046014 Ga0068855_1000460143 378
140 3300005616 Ga0068852_100088741 Ga0068852_1000887412 378
141 3300009093 Ga0105240_10093289 Ga0105240_100932892 378
142 3300009545 Ga0105237_10000247 Ga0105237_1000024725 378
143 3300010375 Ga0105239_10000015 Ga0105239_10000015271 378
144 3300013104 Ga0157370_10019299 Ga0157370_100192993 378
145 3300013104 Ga0157370_10113490 Ga0157370_101134901 378
146 3300013105 Ga0157369_10000555 Ga0157369_1000055511 378
147 3300013306 Ga0163162_10000099 Ga0163162_1000009925 378
148 3300014497 Ga0182008_10001185 Ga0182008_1000118518 378
149 3300025913 Ga0207695_10042590 Ga0207695_100425903 378
150 3300028379 Ga0268266_10000032 Ga0268266_10000032199 378
151 3300037418 Ga0395900_0000541 Ga0395900_0000541_31016_32152 378
152 3300002737 JGI25162J39368_1001024 JGI25162J39368_10010243 379
153 3300003214 JGI25165J46597_1000995 JGI25165J46597_10009954 379
154 3300003316 rootH1_10018616 rootH1_100186165 379
155 3300003320 rootH2_10002321 rootH2_1000232111 379
156 3300003320 rootH2_10107823 rootH2_101078232 379
157 3300005288 Ga0065714_10068335 Ga0065714_100683354 379
158 3300005563 Ga0068855_100000098 Ga0068855_10000009839 379
159 3300005563 Ga0068855_100002259 Ga0068855_1000022597 379
160 3300005563 Ga0068855_100027365 Ga0068855_1000273653 379
161 3300005614 Ga0068856_100000006 Ga0068856_100000006158 379
162 3300006881 Ga0068865_100000128 Ga0068865_10000012810 379
163 3300009093 Ga0105240_10011030 Ga0105240_1001103011 379
164 3300013296 Ga0157374_10007568 Ga0157374_100075681 379
165 3300013306 Ga0163162_10007703 Ga0163162_100077032 379
166 3300013306 Ga0163162_10046629 Ga0163162_100466294 379
167 3300015262 Ga0182007_10000065 Ga0182007_1000006540 379
168 3300025231 Ga0207427_100113 Ga0207427_10011326 379
169 3300025233 Ga0209437_100010 Ga0209437_100010748 379
170 3300025261 Ga0209233_1000017 Ga0209233_1000017761 379
171 3300025904 Ga0207647_10000641 Ga0207647_100006417 379
172 3300025909 Ga0207705_10000336 Ga0207705_1000033637 379
173 3300025913 Ga0207695_10006565 Ga0207695_1000656512 379
174 3300025938 Ga0207704_10000019 Ga0207704_1000001961 379
175 3300025949 Ga0207667_10000014 Ga0207667_10000014144 379
176 3300025949 Ga0207667_10001944 Ga0207667_1000194411 379
177 3300025949 Ga0207667_10012520 Ga0207667_1001252011 379
178 3300026078 Ga0207702_10000023 Ga0207702_10000023142 379
179 3300035115 Ga0373941_0001850 Ga0373941_0001850_2174_3313 379
180 3300037418 Ga0395900_0004918 Ga0395900_0004918_788_1930 379
181 3300037471 Ga0395905_0000462 Ga0395905_0000462_3244_4386 379
182 3300046558 Ga0495633_0000026 Ga0495633_0000026_194607_195746 379
183 3300047472 Ga0495686_0000071 Ga0495686_0000071_63364_64503 379

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00534

Glycos_transf_1

Glycosyl transferases group 1

246

412

0.95

PF13439

Glyco_transf_4

Glycosyltransferase Family 4

60

238

0.88

PF13692

Glyco_trans_1_4

Glycosyl transferases group 1

258

398

0.88

PF20706

GT4-conflict

Family 4 Glycosyltransferase in conflict systems

212

415

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
5i45-assembly1.cif.gz_A 1.35 angstrom crystal structure of c-terminal domain of glycosyl transferase group 1 family protein (lpcc) from francisella tularensis. 0.8601 202 359
3qhp-assembly1.cif.gz_A crystal structure of the catalytic domain of cholesterol-alpha-glucosyltransferase from helicobacter pylori 0.8596 202 355
3qhp-assembly2.cif.gz_B crystal structure of the catalytic domain of cholesterol-alpha-glucosyltransferase from helicobacter pylori 0.8466 202 355
3qhp-assembly1.cif.gz_A crystal structure of the catalytic domain of cholesterol-alpha-glucosyltransferase from helicobacter pylori 0.825 202 355
3qhp-assembly2.cif.gz_B crystal structure of the catalytic domain of cholesterol-alpha-glucosyltransferase from helicobacter pylori 0.821 202 355
ID Description Score Start End Superfamily
af_P9WMZ3_200_365_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9088 205 358 3.40.50.2000
af_Q59002_191_368_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9071 200 355 3.40.50.2000
af_Q9VZU8_216_412_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.905 200 375 3.40.50.2000
af_P9WMY9_212_374_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9033 196 355 3.40.50.2000
5d00A02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8892 200 359 3.40.50.2000
ID Description Score Start End GO Terms
AF-A0A2E6J8Y5-F1-model_v4 Glycosyltransferase 0.9269 1 378 GO:0016758
AF-A0A2E6J8Y5-F1-model_v4 Glycosyltransferase 0.9222 1 378 GO:0016758
AF-I4BZN3-F1-model_v4 Glycosyltransferase 0.9168 1 376 GO:0016757
AF-A0A7C5BRK7-F1-model_v4 Glycosyltransferase 0.9118 146 377 GO:0016757
AF-A0A2V6R030-F1-model_v4 Glycosyl transferase 0.9095 1 168 GO:0016757

Feature Viewer

pLDDT pTM Quality
88.62 0.85 High
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Predicted Structure (AlphaFold2)

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