F279975
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 182 | 153 | 364 | 321 |
Family's Representative Sequence
| Representative Sequence | iso_pu_bacteria|2643221613|2644081547 |
| Length | 364 |
| Sequence | PAHESTLQNVERTKTVGTAAENAILAEDVVEPDAASTTGSVAASSRPEVQRVVILAGGLSHERDVSLRSGRRVAESLRGAGMDVTVLDVDASLLSTLAGDRPDVVWPLLHGASGEDGSVRDVLELLGLDYVGTGPRASRAAWNKAIAKNVVLGAGIDTPDYVTLPQSLFRELGAQPVLDAVVSRLGLPLVVKPNQGGSALGVTLVSRAEDLPRAMVDCFSYGELALIEKAVQGVEVAVSVVDGPDGPHALPAVEIVTDGPYDYDARYNPGRTSYFAPARLSAPVAARVAQVAVDAHVALGLRGLSRSDLIVDPDGVPHFLEVNVAPGMTETSLFPQAAHAAGLDLGGLYRRIVAQSVEARVPAI |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300003285 | Grassland soil microbial communities from Hopland, California, USA - Sample H3_Rhizo_39 (Metagenome Metatranscriptome, Counting Only) | Metatranscriptome | Rhizosphere |
| 2 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 3 | 3300005334 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 | Metagenome | Rhizosphere |
| 4 | 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Metagenome | Rhizosphere |
| 5 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 6 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 7 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 9 | 3300005578 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 | Metagenome | Rhizosphere |
| 10 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 11 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 12 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 13 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 14 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 15 | 3300005981 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 | Metagenome | Rhizosphere |
| 16 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 17 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 18 | 3300006846 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 | Metagenome | Rhizosphere |
| 19 | 3300006847 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Metagenome | Rhizosphere |
| 20 | 3300006852 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 | Metagenome | Rhizosphere |
| 21 | 3300006880 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Metagenome | Rhizosphere |
| 22 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 23 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 24 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 25 | 3300009101 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG | Metagenome | Rhizosphere |
| 26 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 27 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 28 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 29 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 30 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 31 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 32 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 33 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 34 | 3300025900 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 35 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 36 | 3300025911 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 37 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 38 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 39 | 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 40 | 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 42 | 3300025981 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 43 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 46 | 3300027907 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) | Metagenome | Rhizosphere |
| 47 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 48 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 49 | 3300030522 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM | Metagenome | Unclassified |
| 50 | 3300031691 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA | Metagenome | Rhizosphere |
| 51 | 3300031727 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 | Metagenome | Rhizosphere |
| 52 | 3300031824 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 | Metagenome | Rhizosphere |
| 53 | 3300031903 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 | Metagenome | Rhizosphere |
| 54 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 55 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 56 | 3300035398 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 | Metagenome | Rhizosphere |
| 57 | 3300036712 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA | Metagenome | Rhizosphere |
| 58 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 59 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 60 | 3300041405 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 | Metagenome | Rhizosphere |
| 61 | 3300044656 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R | Metagenome | Rhizosphere |
| 62 | 3300044693 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R | Metagenome | Rhizosphere |
| 63 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 64 | 3300044901 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R | Metagenome | Rhizosphere |
| 65 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 66 | 3300046462 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere | Metagenome | Rhizosphere |
| 67 | 3300046516 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere | Metagenome | Rhizosphere |
| 68 | 3300046529 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere | Metagenome | Rhizosphere |
| 69 | 3300046543 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere | Metagenome | Rhizosphere |
| 70 | 3300047317 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere | Metagenome | Rhizosphere |
| 71 | 3300047443 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere | Metagenome | Rhizosphere |
| 72 | 3300048908 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 | Metagenome | Rhizoplane |
| 73 | 3300048914 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 | Metagenome | Rhizoplane |
| 74 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 75 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 76 | 3300048922 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 | Metagenome | Unclassified |
| 77 | 3300048923 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 | Metagenome | Unclassified |
| 78 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 79 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 80 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 81 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 82 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 83 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 84 | 3300049568 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 85 | 3300049569 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 86 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 87 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 88 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 89 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 90 | 3300049577 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 91 | 3300049578 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 92 | 3300049580 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 93 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 94 | 3300049582 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 95 | 3300049587 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 | Metagenome | Rhizosphere |
| 96 | 3300049588 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 | Metagenome | Rhizosphere |
| 97 | 3300049589 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 | Metagenome | Rhizosphere |
| 98 | 3300049591 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 | Metagenome | Rhizosphere |
| 99 | 3300049592 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 | Metagenome | Rhizosphere |
| 100 | 3300049741 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 | Metagenome | Rhizosphere |
| 101 | 3300049743 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 | Metagenome | Rhizosphere |
| 102 | 3300049744 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 | Metagenome | Rhizosphere |
| 103 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 104 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 105 | 3300050507 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation | Metagenome | Rhizosphere |
| 106 | 3300050508 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation | Metagenome | Rhizosphere |
| 107 | 3300050509 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation | Metagenome | Rhizosphere |
| 108 | 3300050510 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation | Metagenome | Rhizosphere |
| 109 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 110 | 3300050512 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation | Metagenome | Rhizosphere |
| 111 | 3300050515 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation | Metagenome | Rhizosphere |
| 112 | 3300053077 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere | Metagenome | Rhizosphere |
| 113 | 3300053092 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere | Metagenome | Endosphere |
| 114 | 3300053149 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere | Metagenome | Endosphere |
| 115 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
| 116 | 3300061734 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) | Metagenome | Rhizosphere |
| 117 | 2643221613 | Oerskovia sp. Root22 | Isolate | Unclassified |
| 118 | 2508501039 | Frankia saprophytica CN3 | Isolate | Nodule |
| 119 | 2517572101 | Frankia sp. DC12 | Isolate | Nodule |
| 120 | 2527291629 | Frankia sp. BMG5.23 | Isolate | Nodule |
| 121 | 2546825537 | Frankia sp. CcI6 | Isolate | Rhizoplane |
| 122 | 2579778521 | Frankia torreyi CpI1-S | Isolate | Unclassified |
| 123 | 2619618881 | Frankia sp. ACN1ag | Isolate | Unclassified |
| 124 | 2619619003 | Frankia sp. CpI1-P | Isolate | Nodule |
| 125 | 2626541554 | Frankia sp. AvcI.1 | Isolate | Nodule |
| 126 | 2643221690 | Cellulomonas sp. Root485 | Isolate | Unclassified |
| 127 | 2643221694 | Cellulomonas sp. Root137 | Isolate | Unclassified |
| 128 | 2643221721 | Oerskovia sp. Root918 | Isolate | Unclassified |
| 129 | 2643221722 | Cellulomonas sp. Root930 | Isolate | Unclassified |
| 130 | 2671180195 | Frankia sp. CcI49 | Isolate | Nodule |
| 131 | 2684623035 | Frankia sp. NRRL B-16219 | Isolate | Rhizosphere |
| 132 | 2684623036 | Frankia sp. CgIM4 | Isolate | Nodule |
| 133 | 2710264753 | Frankia sp. KB5 | Isolate | Nodule |
| 134 | 2738543027 | Promicromonospora sp. CF082 | Isolate | Unclassified |
| 135 | 2739367654 | Promicromonospora sp. YR516 | Isolate | Unclassified |
| 136 | 2758568522 | Promicromonospora thailandica SAI-039 | Isolate | Unclassified |
| 137 | 2758568621 | Promicromonospora sukumoe SAI-064 | Isolate | Unclassified |
| 138 | 2773857922 | Frankia sp. CcI49 | Isolate | Nodule |
| 139 | 2773857924 | Frankia sp. CgIS1 | Isolate | Nodule |
| 140 | 2808606394 | Promicromonospora sp. C35 | Isolate | Unclassified |
| 141 | 2811994880 | Cellulomonas sp. SLBN-39 | Isolate | Unclassified |
| 142 | 2839986021 | Cellulosimicrobium cellulans JZ5 | Isolate | Unclassified |
| 143 | 2855386786 | Nocardioides ferulae EGI 63112 | Isolate | Unclassified |
| 144 | 2884994152 | Cellulomonas sp. H30R-01 | Isolate | Rhizosphere |
| 145 | 2887443736 | Ruania rhizosphaerae LNNU 22110 | Isolate | Rhizosphere |
| 146 | 2895880812 | Frankia sp. BMG5.11 | Isolate | Unclassified |
| 147 | 2932431166 | Cellulosimicrobium sp. 4261 | Isolate | Rhizosphere |
| 148 | 2935890801 | Oerskovia enterophila 3230 | Isolate | Rhizosphere |
| 149 | 8002775197 | Frankia nepalensis CN7 | Isolate | Nodule |
| 150 | 8002784119 | Frankia sp. AgB1.9 | Isolate | Nodule |
| 151 | 8054920844 | Frankia tisae Agncl-8 | Isolate | Nodule |
| 152 | 8055157932 | Frankia umida Ag45/Mut15 | Isolate | Nodule |
| 153 | 8056579771 | Promicromonospora iranensis UTMC 00792 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 79.12 |
| Metatranscriptomes | 0.55 |
| Isolates | 20.33 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 1.1 |
| Nodule | 7.69 |
| Rhizoplane | 1.65 |
| Rhizosphere | 71.43 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 1.1 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0007423J48922_100374 | 3300003285 | Bacteria | 6760 |
| 2 | Ga0070683_100214042 | 3300005329 | Bacteria | 1831 |
| 3 | Ga0068869_100025729 | 3300005334 | Bacteria | 4090 |
| 4 | Ga0070663_100030441 | 3300005455 | Bacteria | 3699 |
| 5 | Ga0070684_100238270 | 3300005535 | Bacteria | 1662 |
| 6 | Ga0068853_100059777 | 3300005539 | Bacteria | 3293 |
| 7 | Ga0070665_100020004 | 3300005548 | Bacteria | 6722 |
| 8 | Ga0068855_100003079 | 3300005563 | Bacteria | 20393 |
| 9 | Ga0068854_100006367 | 3300005578 | Bacteria | 7507 |
| 10 | Ga0068852_100006212 | 3300005616 | Bacteria | 8612 |
| 11 | Ga0068859_100000054 | 3300005617 | Bacteria | 123173 |
| 12 | Ga0068859_100002001 | 3300005617 | Bacteria | 20802 |
| 13 | Ga0068863_100000435 | 3300005841 | Bacteria | 42162 |
| 14 | Ga0068862_100000037 | 3300005844 | Bacteria | 172796 |
| 15 | Ga0081455_10001865 | 3300005937 | Bacteria | 25366 |
| 16 | Ga0081455_10001942 | 3300005937 | Bacteria | 24845 |
| 17 | Ga0081538_10001831 | 3300005981 | Bacteria | 21425 |
| 18 | Ga0081538_10022626 | 3300005981 | Bacteria | 4548 |
| 19 | Ga0081538_10131326 | 3300005981 | Bacteria | 1176 |
| 20 | Ga0081539_10055403 | 3300005985 | Bacteria | 2206 |
| 21 | Ga0075428_100003220 | 3300006844 | Bacteria | 17860 |
| 22 | Ga0075428_100016913 | 3300006844 | Bacteria | 8055 |
| 23 | Ga0075430_100017007 | 3300006846 | Bacteria | 6194 |
| 24 | Ga0075431_100002560 | 3300006847 | Bacteria | 17550 |
| 25 | Ga0075431_100014597 | 3300006847 | Bacteria | 7946 |
| 26 | Ga0075433_10177512 | 3300006852 | Bacteria | 1895 |
| 27 | Ga0075429_100001964 | 3300006880 | Bacteria | 17081 |
| 28 | Ga0075429_100084413 | 3300006880 | Bacteria | 2768 |
| 29 | Ga0097620_100000054 | 3300006931 | Bacteria | 123173 |
| 30 | Ga0097620_100002001 | 3300006931 | Bacteria | 20802 |
| 31 | Ga0105240_10060957 | 3300009093 | Bacteria | 4702 |
| 32 | Ga0111539_10049892 | 3300009094 | Bacteria | 4988 |
| 33 | Ga0105247_10001789 | 3300009101 | Bacteria | 15105 |
| 34 | Ga0114129_10004806 | 3300009147 | Bacteria | 19096 |
| 35 | Ga0114129_10274794 | 3300009147 | Bacteria | 2253 |
| 36 | Ga0105248_10000076 | 3300009177 | Bacteria | 114070 |
| 37 | Ga0105248_10018968 | 3300009177 | Bacteria | 7606 |
| 38 | Ga0105237_10086865 | 3300009545 | Bacteria | 3118 |
| 39 | Ga0105237_10242285 | 3300009545 | Bacteria | 1804 |
| 40 | Ga0105238_10002728 | 3300009551 | Bacteria | 17585 |
| 41 | Ga0157370_10262388 | 3300013104 | Bacteria | 1596 |
| 42 | Ga0157369_10127531 | 3300013105 | Bacteria | 2697 |
| 43 | Ga0157374_10003829 | 3300013296 | Bacteria | 12635 |
| 44 | Ga0163163_10001502 | 3300014325 | Bacteria | 19750 |
| 45 | Ga0207710_10000079 | 3300025900 | Bacteria | 140820 |
| 46 | Ga0207705_10124712 | 3300025909 | Bacteria | 1913 |
| 47 | Ga0207654_10010898 | 3300025911 | Bacteria | 4627 |
| 48 | Ga0207671_10000109 | 3300025914 | Bacteria | 128184 |
| 49 | Ga0207694_10002047 | 3300025924 | Bacteria | 16673 |
| 50 | Ga0207711_10000604 | 3300025941 | Bacteria | 36283 |
| 51 | Ga0207711_10012539 | 3300025941 | Bacteria | 7043 |
| 52 | Ga0207689_10031941 | 3300025942 | Bacteria | 4379 |
| 53 | Ga0207661_10321117 | 3300025944 | Unclassified | 1392 |
| 54 | Ga0207640_10164810 | 3300025981 | Bacteria | 1644 |
| 55 | Ga0207639_10012701 | 3300026041 | Bacteria | 5873 |
| 56 | Ga0207641_10001272 | 3300026088 | Bacteria | 25094 |
| 57 | Ga0207698_10002708 | 3300026142 | Bacteria | 10544 |
| 58 | Ga0207428_10001784 | 3300027907 | Bacteria | 22039 |
| 59 | Ga0268266_10010323 | 3300028379 | Bacteria | 8170 |
| 60 | Ga0268265_10000008 | 3300028380 | Bacteria | 417328 |
| 61 | Ga0307512_10005037 | 3300030522 | Bacteria | 14067 |
| 62 | Ga0316579_10012218 | 3300031691 | Bacteria | 3667 |
| 63 | Ga0316576_10039134 | 3300031727 | Bacteria | 3403 |
| 64 | Ga0316576_10195383 | 3300031727 | Bacteria | 1525 |
| 65 | Ga0307413_10093660 | 3300031824 | Bacteria | 1964 |
| 66 | Ga0307407_10041018 | 3300031903 | Bacteria | 2586 |
| 67 | Ga0307409_100155883 | 3300031995 | Bacteria | 1990 |
| 68 | Ga0307409_100380186 | 3300031995 | Bacteria | 1342 |
| 69 | Ga0307416_100536829 | 3300032002 | Unclassified | 1241 |
| 70 | Ga0316574_0003143 | 3300035398 | Bacteria | 8448 |
| 71 | Ga0316574_0016515 | 3300035398 | Bacteria | 4302 |
| 72 | Ga0316584_0192859 | 3300036712 | Bacteria | 1505 |
| 73 | Ga0395898_0011757 | 3300037466 | Bacteria | 9076 |
| 74 | Ga0395901_0006562 | 3300038443 | Bacteria | 11764 |
| 75 | Ga0439438_032437 | 3300041405 | Bacteria | 1385 |
| 76 | Ga0466969_0015401 | 3300044656 | Bacteria | 4008 |
| 77 | Ga0466961_0053851 | 3300044693 | Bacteria | 2567 |
| 78 | Ga0466970_0081086 | 3300044765 | Bacteria | 1754 |
| 79 | Ga0466960_0041913 | 3300044901 | Bacteria | 2171 |
| 80 | Ga0466967_0092569 | 3300045976 | Bacteria | 2749 |
| 81 | Ga0495651_0000581 | 3300046462 | Bacteria | 28369 |
| 82 | Ga0495628_0005103 | 3300046516 | Bacteria | 11543 |
| 83 | Ga0495652_0001296 | 3300046529 | Bacteria | 27926 |
| 84 | Ga0495645_0007516 | 3300046543 | Bacteria | 7585 |
| 85 | Ga0495604_0009818 | 3300047317 | Bacteria | 7572 |
| 86 | Ga0495687_009146 | 3300047443 | Bacteria | 5578 |
| 87 | Ga0496105_0217486 | 3300048908 | Bacteria | 1556 |
| 88 | Ga0496111_0038941 | 3300048914 | Bacteria | 3407 |
| 89 | Ga0496117_0008400 | 3300048920 | Bacteria | 9814 |
| 90 | Ga0496117_0084786 | 3300048920 | Bacteria | 2065 |
| 91 | Ga0496118_0004750 | 3300048921 | Bacteria | 15897 |
| 92 | Ga0496118_0040264 | 3300048921 | Bacteria | 3718 |
| 93 | Ga0496118_0047099 | 3300048921 | Bacteria | 3346 |
| 94 | Ga0496119_0006793 | 3300048922 | Bacteria | 10489 |
| 95 | Ga0496119_0011186 | 3300048922 | Bacteria | 7470 |
| 96 | Ga0496120_0001355 | 3300048923 | Bacteria | 30072 |
| 97 | Ga0496121_0024143 | 3300048924 | Bacteria | 5824 |
| 98 | Ga0496122_0000098 | 3300048925 | Bacteria | 198547 |
| 99 | Ga0496122_0002574 | 3300048925 | Bacteria | 25478 |
| 100 | Ga0496123_0000074 | 3300048926 | Bacteria | 196689 |
| 101 | Ga0496124_0000179 | 3300048927 | Bacteria | 125772 |
| 102 | Ga0496125_0000046 | 3300048928 | Bacteria | 295288 |
| 103 | Ga0496125_0000283 | 3300048928 | Bacteria | 100594 |
| 104 | Ga0496126_0233114 | 3300048929 | Bacteria | 1541 |
| 105 | Ga0501031_0162975 | 3300049568 | Bacteria | 1457 |
| 106 | Ga0501032_0008202 | 3300049569 | Bacteria | 7612 |
| 107 | Ga0501032_0176966 | 3300049569 | Bacteria | 1397 |
| 108 | Ga0501033_0094929 | 3300049570 | Bacteria | 2180 |
| 109 | Ga0501036_0006908 | 3300049572 | Bacteria | 9229 |
| 110 | Ga0501038_0005768 | 3300049574 | Bacteria | 11467 |
| 111 | Ga0501038_0124050 | 3300049574 | Bacteria | 2127 |
| 112 | Ga0501039_0049869 | 3300049575 | Bacteria | 3237 |
| 113 | Ga0501041_0093635 | 3300049577 | Bacteria | 1855 |
| 114 | Ga0501042_0007656 | 3300049578 | Bacteria | 7089 |
| 115 | Ga0501046_0012505 | 3300049580 | Bacteria | 7223 |
| 116 | Ga0501047_0007290 | 3300049581 | Bacteria | 10397 |
| 117 | Ga0501048_0095356 | 3300049582 | Bacteria | 2098 |
| 118 | Ga0501071_0030450 | 3300049587 | Bacteria | 3817 |
| 119 | Ga0501072_0007006 | 3300049588 | Bacteria | 8557 |
| 120 | Ga0501073_0105451 | 3300049589 | Bacteria | 1956 |
| 121 | Ga0501075_0057509 | 3300049591 | Bacteria | 2928 |
| 122 | Ga0501076_0059457 | 3300049592 | Bacteria | 3040 |
| 123 | Ga0501079_0211327 | 3300049741 | Bacteria | 1515 |
| 124 | Ga0501081_0017947 | 3300049743 | Bacteria | 4694 |
| 125 | Ga0501083_0047253 | 3300049744 | Bacteria | 2909 |
| 126 | Ga0501083_0247985 | 3300049744 | Bacteria | 1159 |
| 127 | Ga0501035_0076357 | 3300049822 | Bacteria | 2963 |
| 128 | Ga0501044_0061948 | 3300049823 | Bacteria | 3826 |
| 129 | Ga0501044_0132878 | 3300049823 | Bacteria | 2482 |
| 130 | nmdc:mga05p37_7231_c1 | 3300050507 | Bacteria | 13097 |
| 131 | nmdc:mga09592_2962_c1 | 3300050508 | Bacteria | 13760 |
| 132 | nmdc:mga0qj67_17128_c1 | 3300050509 | Bacteria | 3630 |
| 133 | nmdc:mga0qj67_5120_c1 | 3300050509 | Bacteria | 9545 |
| 134 | nmdc:mga06r32_4907_c1 | 3300050510 | Bacteria | 12048 |
| 135 | nmdc:mga06r32_996_c1 | 3300050510 | Bacteria | 25413 |
| 136 | nmdc:mga08y16_24561_c1 | 3300050511 | Bacteria | 6360 |
| 137 | nmdc:mga0n895_242480_c1 | 3300050512 | Bacteria | 1829 |
| 138 | nmdc:mga0a205_59684_c1 | 3300050515 | Bacteria | 3684 |
| 139 | Ga0495601_0049781 | 3300053077 | Bacteria | 2643 |
| 140 | Ga0495601_0088105 | 3300053077 | Bacteria | 1996 |
| 141 | Ga0500583_0104989 | 3300053092 | Bacteria | 1387 |
| 142 | Ga0500600_0165170 | 3300053149 | Bacteria | 1084 |
| 143 | Ga0501082_0058207 | 3300060353 | Bacteria | 3329 |
| 144 | Ga0501082_0144133 | 3300060353 | Bacteria | 2067 |
| 145 | Ga0530510_0248817 | 3300061734 | Bacteria | 1324 |
| 146 | 2644081547 | 2643221613 | Bacteria | 4622396 |
| 147 | 2508674188 | 2508501039 | Bacteria | 9978592 |
| 148 | 2517760853 | 2517572101 | Bacteria | 6884336 |
| 149 | 2528215800 | 2527291629 | Bacteria | 5267418 |
| 150 | 2546951441 | 2546825537 | Bacteria | 5389291 |
| 151 | 2579854400 | 2579778521 | Bacteria | 7624758 |
| 152 | 2619857102 | 2619618881 | Bacteria | 7521104 |
| 153 | 2620350575 | 2619619003 | Bacteria | 7619552 |
| 154 | 2626640329 | 2626541554 | Bacteria | 7741902 |
| 155 | 2644504313 | 2643221690 | Bacteria | 4654705 |
| 156 | 2644524165 | 2643221694 | Bacteria | 4392972 |
| 157 | 2644664830 | 2643221721 | Bacteria | 4486924 |
| 158 | 2644668265 | 2643221722 | Bacteria | 4247614 |
| 159 | 2671836606 | 2671180195 | Bacteria | 9757215 |
| 160 | 2686536370 | 2684623035 | Bacteria | 8032739 |
| 161 | 2686544689 | 2684623036 | Bacteria | 5199090 |
| 162 | 2710605758 | 2710264753 | Bacteria | 5455564 |
| 163 | 2739325180 | 2738543027 | Bacteria | 6409078 |
| 164 | 2739609443 | 2739367654 | Bacteria | 6049412 |
| 165 | 2760305435 | 2758568522 | Bacteria | 5953541 |
| 166 | 2760626084 | 2758568621 | Bacteria | 5967089 |
| 167 | 2774854762 | 2773857922 | Bacteria | 9757215 |
| 168 | 2774867735 | 2773857924 | Bacteria | 5256821 |
| 169 | 2809031091 | 2808606394 | Bacteria | 6248540 |
| 170 | 2812363194 | 2811994880 | Bacteria | 4147780 |
| 171 | 2839988986 | 2839986021 | Bacteria | 3685650 |
| 172 | 2855388510 | 2855386786 | Bacteria | 4752232 |
| 173 | 2884997510 | 2884994152 | Bacteria | 4492978 |
| 174 | 2887445227 | 2887443736 | Bacteria | 4426037 |
| 175 | 2895885709 | 2895880812 | Bacteria | 11255272 |
| 176 | 2932434078 | 2932431166 | Bacteria | 4215299 |
| 177 | 2935894581 | 2935890801 | Bacteria | 4593001 |
| 178 | 8002780480 | 8002775197 | Bacteria | 10728764 |
| 179 | 8002786091 | 8002784119 | Bacteria | 9788632 |
| 180 | 8054922062 | 8054920844 | Bacteria | 7068637 |
| 181 | 8055159324 | 8055157932 | Bacteria | 6429399 |
| 182 | 8056584475 | 8056579771 | Bacteria | 5840325 |
| 183 | Ga0007423J48922_100374 | |||
| 184 | Ga0070683_100214042 | |||
| 185 | Ga0068869_100025729 | |||
| 186 | Ga0070663_100030441 | |||
| 187 | Ga0070684_100238270 | |||
| 188 | Ga0068853_100059777 | |||
| 189 | Ga0070665_100020004 | |||
| 190 | Ga0068855_100003079 | |||
| 191 | Ga0068854_100006367 | |||
| 192 | Ga0068852_100006212 | |||
| 193 | Ga0068859_100000054 | |||
| 194 | Ga0068859_100002001 | |||
| 195 | Ga0068863_100000435 | |||
| 196 | Ga0068862_100000037 | |||
| 197 | Ga0081455_10001865 | |||
| 198 | Ga0081455_10001942 | |||
| 199 | Ga0081538_10001831 | |||
| 200 | Ga0081538_10022626 | |||
| 201 | Ga0081538_10131326 | |||
| 202 | Ga0081539_10055403 | |||
| 203 | Ga0075428_100003220 | |||
| 204 | Ga0075428_100016913 | |||
| 205 | Ga0075430_100017007 | |||
| 206 | Ga0075431_100002560 | |||
| 207 | Ga0075431_100014597 | |||
| 208 | Ga0075433_10177512 | |||
| 209 | Ga0075429_100001964 | |||
| 210 | Ga0075429_100084413 | |||
| 211 | Ga0097620_100000054 | |||
| 212 | Ga0097620_100002001 | |||
| 213 | Ga0105240_10060957 | |||
| 214 | Ga0111539_10049892 | |||
| 215 | Ga0105247_10001789 | |||
| 216 | Ga0114129_10004806 | |||
| 217 | Ga0114129_10274794 | |||
| 218 | Ga0105248_10000076 | |||
| 219 | Ga0105248_10018968 | |||
| 220 | Ga0105237_10086865 | |||
| 221 | Ga0105237_10242285 | |||
| 222 | Ga0105238_10002728 | |||
| 223 | Ga0157370_10262388 | |||
| 224 | Ga0157369_10127531 | |||
| 225 | Ga0157374_10003829 | |||
| 226 | Ga0163163_10001502 | |||
| 227 | Ga0207710_10000079 | |||
| 228 | Ga0207705_10124712 | |||
| 229 | Ga0207654_10010898 | |||
| 230 | Ga0207671_10000109 | |||
| 231 | Ga0207694_10002047 | |||
| 232 | Ga0207711_10000604 | |||
| 233 | Ga0207711_10012539 | |||
| 234 | Ga0207689_10031941 | |||
| 235 | Ga0207661_10321117 | |||
| 236 | Ga0207640_10164810 | |||
| 237 | Ga0207639_10012701 | |||
| 238 | Ga0207641_10001272 | |||
| 239 | Ga0207698_10002708 | |||
| 240 | Ga0207428_10001784 | |||
| 241 | Ga0268266_10010323 | |||
| 242 | Ga0268265_10000008 | |||
| 243 | Ga0307512_10005037 | |||
| 244 | Ga0316579_10012218 | |||
| 245 | Ga0316576_10039134 | |||
| 246 | Ga0316576_10195383 | |||
| 247 | Ga0307413_10093660 | |||
| 248 | Ga0307407_10041018 | |||
| 249 | Ga0307409_100155883 | |||
| 250 | Ga0307409_100380186 | |||
| 251 | Ga0307416_100536829 | |||
| 252 | Ga0316574_0003143 | |||
| 253 | Ga0316574_0016515 | |||
| 254 | Ga0316584_0192859 | |||
| 255 | Ga0395898_0011757 | |||
| 256 | Ga0395901_0006562 | |||
| 257 | Ga0439438_032437 | |||
| 258 | Ga0466969_0015401 | |||
| 259 | Ga0466961_0053851 | |||
| 260 | Ga0466970_0081086 | |||
| 261 | Ga0466960_0041913 | |||
| 262 | Ga0466967_0092569 | |||
| 263 | Ga0495651_0000581 | |||
| 264 | Ga0495628_0005103 | |||
| 265 | Ga0495652_0001296 | |||
| 266 | Ga0495645_0007516 | |||
| 267 | Ga0495604_0009818 | |||
| 268 | Ga0495687_009146 | |||
| 269 | Ga0496105_0217486 | |||
| 270 | Ga0496111_0038941 | |||
| 271 | Ga0496117_0008400 | |||
| 272 | Ga0496117_0084786 | |||
| 273 | Ga0496118_0004750 | |||
| 274 | Ga0496118_0040264 | |||
| 275 | Ga0496118_0047099 | |||
| 276 | Ga0496119_0006793 | |||
| 277 | Ga0496119_0011186 | |||
| 278 | Ga0496120_0001355 | |||
| 279 | Ga0496121_0024143 | |||
| 280 | Ga0496122_0000098 | |||
| 281 | Ga0496122_0002574 | |||
| 282 | Ga0496123_0000074 | |||
| 283 | Ga0496124_0000179 | |||
| 284 | Ga0496125_0000046 | |||
| 285 | Ga0496125_0000283 | |||
| 286 | Ga0496126_0233114 | |||
| 287 | Ga0501031_0162975 | |||
| 288 | Ga0501032_0008202 | |||
| 289 | Ga0501032_0176966 | |||
| 290 | Ga0501033_0094929 | |||
| 291 | Ga0501036_0006908 | |||
| 292 | Ga0501038_0005768 | |||
| 293 | Ga0501038_0124050 | |||
| 294 | Ga0501039_0049869 | |||
| 295 | Ga0501041_0093635 | |||
| 296 | Ga0501042_0007656 | |||
| 297 | Ga0501046_0012505 | |||
| 298 | Ga0501047_0007290 | |||
| 299 | Ga0501048_0095356 | |||
| 300 | Ga0501071_0030450 | |||
| 301 | Ga0501072_0007006 | |||
| 302 | Ga0501073_0105451 | |||
| 303 | Ga0501075_0057509 | |||
| 304 | Ga0501076_0059457 | |||
| 305 | Ga0501079_0211327 | |||
| 306 | Ga0501081_0017947 | |||
| 307 | Ga0501083_0047253 | |||
| 308 | Ga0501083_0247985 | |||
| 309 | Ga0501035_0076357 | |||
| 310 | Ga0501044_0061948 | |||
| 311 | Ga0501044_0132878 | |||
| 312 | nmdc:mga05p37_7231_c1 | |||
| 313 | nmdc:mga09592_2962_c1 | |||
| 314 | nmdc:mga0qj67_17128_c1 | |||
| 315 | nmdc:mga0qj67_5120_c1 | |||
| 316 | nmdc:mga06r32_4907_c1 | |||
| 317 | nmdc:mga06r32_996_c1 | |||
| 318 | nmdc:mga08y16_24561_c1 | |||
| 319 | nmdc:mga0n895_242480_c1 | |||
| 320 | nmdc:mga0a205_59684_c1 | |||
| 321 | Ga0495601_0049781 | |||
| 322 | Ga0495601_0088105 | |||
| 323 | Ga0500583_0104989 | |||
| 324 | Ga0500600_0165170 | |||
| 325 | Ga0501082_0058207 | |||
| 326 | Ga0501082_0144133 | |||
| 327 | Ga0530510_0248817 | |||
| 328 | 2644081547 | |||
| 329 | 2508674188 | |||
| 330 | 2517760853 | |||
| 331 | 2528215800 | |||
| 332 | 2546951441 | |||
| 333 | 2579854400 | |||
| 334 | 2619857102 | |||
| 335 | 2620350575 | |||
| 336 | 2626640329 | |||
| 337 | 2644504313 | |||
| 338 | 2644524165 | |||
| 339 | 2644664830 | |||
| 340 | 2644668265 | |||
| 341 | 2671836606 | |||
| 342 | 2686536370 | |||
| 343 | 2686544689 | |||
| 344 | 2710605758 | |||
| 345 | 2739325180 | |||
| 346 | 2739609443 | |||
| 347 | 2760305435 | |||
| 348 | 2760626084 | |||
| 349 | 2774854762 | |||
| 350 | 2774867735 | |||
| 351 | 2809031091 | |||
| 352 | 2812363194 | |||
| 353 | 2839988986 | |||
| 354 | 2855388510 | |||
| 355 | 2884997510 | |||
| 356 | 2887445227 | |||
| 357 | 2895885709 | |||
| 358 | 2932434078 | |||
| 359 | 2935894581 | |||
| 360 | 8002780480 | |||
| 361 | 8002786091 | |||
| 362 | 8054922062 | |||
| 363 | 8055159324 | |||
| 364 | 8056584475 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 5d8d-assembly1.cif.gz_A | crystal structure of d-alanine-d-alanine ligase from acinetobacter baumannii | 0.9408 | 26 | 331 |
| 5bpf-assembly2.cif.gz_D | crystal structure of adp complexed d-alanine-d-alanine ligase(ddl) from yersinia pestis | 0.939 | 24 | 329 |
| 5c1o-assembly2.cif.gz_D | crystal structure of amp-pnp complexed d-alanine-d-alanine ligase(ddl) from yersinia pestis | 0.9349 | 24 | 329 |
| 5c1p-assembly2.cif.gz_D | crystal structure of adp and d-alanyl-d-alanine complexed d-alanine-d-alanine ligase(ddl) from yersinia pestis | 0.934 | 24 | 329 |
| 5c1p-assembly1.cif.gz_A | crystal structure of adp and d-alanyl-d-alanine complexed d-alanine-d-alanine ligase(ddl) from yersinia pestis | 0.9333 | 24 | 329 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 3q1kB02 | Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain | 0.9531 | 208 | 332 | 3.30.470.20 |
| 5bpfD02 | Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain | 0.9153 | 208 | 334 | 3.30.470.20 |
| 4egjA01 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; | 0.9136 | 26 | 105 | 3.40.50.20 |
| 5dmxF02 | Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain | 0.911 | 108 | 315 | 3.30.470.20 |
| af_P9WP31_235_360_3.30.470.20 | Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain | 0.905 | 208 | 325 | 3.30.470.20 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A7W7HCA4-F1-model_v4 | D-alanine--D-alanine ligase (EC 6.3.2.4) (D-Ala-D-Ala ligase) (D-alanylalanine synthetase) | 0.981 | 25 | 333 |
GO:0005524
GO:0005737 GO:0008360 GO:0008716 GO:0009252 GO:0046872 GO:0071555 |
| AF-A0A087VVT8-F1-model_v4 | D-alanine--D-alanine ligase (EC 6.3.2.4) (D-Ala-D-Ala ligase) (D-alanylalanine synthetase) | 0.9778 | 25 | 332 |
GO:0005524
GO:0005737 GO:0008360 GO:0008716 GO:0009252 GO:0046872 GO:0071555 |
| AF-A0A838HDG3-F1-model_v4 | D-alanine--D-alanine ligase | 0.9754 | 24 | 197 |
GO:0005524
GO:0008716 GO:0046872 GO:0071555 |
| AF-A0A3P3W0W4-F1-model_v4 | D-alanine--D-alanine ligase (EC 6.3.2.4) (D-Ala-D-Ala ligase) (D-alanylalanine synthetase) | 0.9718 | 23 | 338 |
GO:0005524
GO:0005737 GO:0008360 GO:0008716 GO:0009252 GO:0046872 GO:0071555 |
| AF-L1PEV6-F1-model_v4 | deleted | 0.9711 | 23 | 332 |
|