F279331

General Info

Members Datasets Scaffolds Average Seq Length
182 125 160 320

Family's Representative Sequence

Representative Sequence 3300028794|Ga0307515_10000747|Ga0307515_1000074721
Length 349
Sequence MCLYPHIKYCYYFNKKLLDPFTMREPLFIKQNSARWKSYETDPARDPDELAERFITITDDLAYAKTFYPKSKTTVYLNGLAAGFHQSIYKNKKEKANRFIFFWQMELPLLFVQYRRQLLYSFIFFITFFLIGILSSKYDRNFIRLILGDDYVNMTNENISKGDPFGVYKSQNEFLMFWQIAKNNLQVTAITFVAGITLSAGTMYLLFKNGIMVGCFQYLFIAQGLGIKSVMVIWIHGTLEISTIILAGAAGLIMGNSILFPKTFSRAVSLKKGALDGIKIMLGISPIVVTAAIFESFITRRTEMPIWLSISILTGSFLFIIWYVVIYPAYLSYNLKTTANTNEGENRAK

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
3 2738541278 Niastella sp. CF465 Isolate Unclassified
4 2738541283 Pedobacter sp. OK701 Isolate Unclassified
5 2738541284 Pedobacter sp. YR016 Isolate Unclassified
6 2738541302 Pedobacter sp. CF074 Isolate Unclassified
7 2738543023 Pedobacter sp. OK628 Isolate Unclassified
8 2739367651 Pedobacter sp. OK291 Isolate Unclassified
9 2739367656 Pedobacter sp. CF523 Isolate Unclassified
10 2739367663 Pedobacter sp. YR510 Isolate Unclassified
11 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
12 2818991437 Pedobacter terrae 518 Isolate Unclassified
13 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
14 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
15 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
16 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
17 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
18 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
19 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
20 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
21 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
22 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
23 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
24 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
25 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
26 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
27 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
28 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
29 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
30 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
31 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
32 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
33 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
34 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
35 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
36 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
37 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
38 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
39 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
40 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
41 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
42 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
43 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
44 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
45 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
46 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
47 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
48 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
49 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
50 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
51 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
52 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
53 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
54 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
55 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
56 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
57 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
58 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
59 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
60 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
61 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
62 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
63 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
64 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
65 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
66 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
69 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
70 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
83 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
84 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
85 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
86 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
87 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
88 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
89 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
90 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
91 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
92 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
93 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
94 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
95 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
96 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
97 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
98 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
99 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
100 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
101 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
102 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
103 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
104 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
105 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
106 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
107 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
108 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
109 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
110 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
111 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
112 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
113 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
114 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
115 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
116 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
117 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
118 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
119 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
120 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
121 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
122 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
123 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
124 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
125 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 87.36
Metatranscriptomes 0
Isolates 12.64

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.09
Nodule 0
Rhizoplane 0
Rhizosphere 71.98
Stem 0
Stem Tuber 0
Unclassified 15.93

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2276363 2162886007 Bacteria 13156
2 JGI25157J39369_1005748 3300002741 Bacteria 1970
3 JGI25152J39213_1000054 3300002773 Bacteria 76796
4 JGI25150J39212_1000003 3300002774 Bacteria 508651
5 JGI25150J39212_1000004 3300002774 Bacteria 417320
6 JGI25151J46595_10000002 3300003187 Bacteria 731381
7 JGI25153J46596_10000015 3300003215 Bacteria 289820
8 rootH2_10143988 3300003320 Unclassified 2717
9 rootL2_10136974 3300003322 Bacteria 5292
10 rootL2_10156444 3300003322 Bacteria 8320
11 rootH1_10009908 3300003323 Bacteria 24135
12 rootH1_10045760 3300003316 Bacteria 11183
13 rootH1_10045760 3300003323 Bacteria 5061
14 rootH1_10122049 3300003323 Bacteria 9449
15 Ga0055536_1000006 3300003781 Bacteria 347733
16 Ga0055530_10000679 3300003791 Bacteria 28914
17 Ga0065714_10064558 3300005288 Bacteria 36374
18 Ga0065714_10064803 3300005288 Bacteria 18319
19 Ga0065714_10073366 3300005288 Bacteria 3198
20 Ga0065714_10098641 3300005288 Bacteria 1706
21 Ga0065704_10000670 3300005289 Bacteria 14748
22 Ga0070660_100249762 3300005339 Bacteria 1446
23 Ga0070663_100002213 3300005455 Bacteria 10879
24 Ga0068855_100124184 3300005563 Bacteria 2953
25 Ga0068855_100236525 3300005563 Bacteria 2043
26 Ga0068855_100415041 3300005563 Bacteria 1473
27 Ga0068855_100456974 3300005563 Bacteria 1393
28 Ga0068855_100590083 3300005563 Bacteria 1199
29 Ga0068856_100087934 3300005614 Bacteria 3089
30 Ga0068856_100121172 3300005614 Unclassified 2617
31 Ga0068859_100197715 3300005617 Bacteria 2095
32 Ga0075366_10000587 3300006195 Bacteria 17036
33 Ga0105244_10005960 3300009036 Bacteria 7988
34 Ga0105240_10007681 3300009093 Bacteria 15609
35 Ga0105240_10007744 3300009093 Bacteria 15536
36 Ga0105240_10009517 3300009093 Bacteria 13755
37 Ga0105240_10179622 3300009093 Bacteria 2499
38 Ga0105241_10030973 3300009174 Bacteria 4001
39 Ga0105241_10060472 3300009174 Bacteria 2915
40 Ga0105237_10001478 3300009545 Bacteria 30966
41 Ga0105237_10001876 3300009545 Bacteria 26824
42 Ga0105237_10006880 3300009545 Bacteria 12533
43 Ga0105237_10036511 3300009545 Bacteria 4973
44 Ga0105237_10058074 3300009545 Bacteria 3872
45 Ga0105249_10337058 3300009553 Bacteria 1524
46 Ga0105239_10000017 3300010375 Bacteria 290760
47 Ga0105239_10001486 3300010375 Bacteria 31166
48 Ga0105239_10047488 3300010375 Bacteria 4705
49 Ga0157373_10000262 3300013100 Bacteria 42799
50 Ga0157373_10000841 3300013100 Bacteria 23824
51 Ga0157371_10000025 3300013102 Bacteria 279746
52 Ga0157371_10003580 3300013102 Bacteria 14001
53 Ga0157371_10003607 3300013102 Bacteria 13949
54 Ga0157370_10000383 3300013104 Bacteria 55670
55 Ga0157370_10002681 3300013104 Bacteria 21338
56 Ga0157370_10022023 3300013104 Bacteria 6345
57 Ga0157370_10031196 3300013104 Bacteria 5216
58 Ga0157369_10000164 3300013105 Bacteria 94229
59 Ga0157369_10001079 3300013105 Bacteria 34142
60 Ga0157374_10014760 3300013296 Bacteria 6839
61 Ga0157374_10123411 3300013296 Bacteria 2502
62 Ga0157374_10180295 3300013296 Bacteria 2063
63 Ga0163162_10000065 3300013306 Bacteria 102191
64 Ga0163162_10004456 3300013306 Bacteria 13495
65 Ga0163162_10032489 3300013306 Bacteria 5185
66 Ga0157372_10000039 3300013307 Bacteria 165839
67 Ga0157372_10128539 3300013307 Bacteria 2914
68 Ga0157375_10003754 3300013308 Bacteria 13173
69 Ga0157375_10020619 3300013308 Bacteria 6025
70 Ga0182008_10000002 3300014497 Bacteria 480216
71 Ga0182008_10000073 3300014497 Bacteria 78212
72 Ga0182008_10000601 3300014497 Bacteria 26469
73 Ga0182006_1000351 3300015261 Bacteria 38720
74 Ga0182006_1000546 3300015261 Bacteria 28457
75 Ga0182006_1002191 3300015261 Bacteria 10827
76 Ga0182006_1002306 3300015261 Bacteria 10505
77 Ga0182006_1034567 3300015261 Bacteria 2021
78 Ga0182007_10000005 3300015262 Bacteria 442702
79 Ga0183373_1002 3300015682 Bacteria 990153
80 Ga0163161_10000135 3300017792 Bacteria 69859
81 Ga0163161_10000539 3300017792 Bacteria 30832
82 Ga0163161_10000837 3300017792 Bacteria 24003
83 Ga0213872_10004533 3300021361 Bacteria 7353
84 Ga0207425_1000003 3300025245 Bacteria 1145342
85 Ga0209026_1000201 3300025250 Bacteria 82838
86 Ga0209129_1000014 3300025258 Bacteria 509018
87 Ga0209455_1001587 3300025272 Bacteria 10013
88 Ga0209676_1000039 3300025292 Bacteria 443158
89 Ga0209025_1000007 3300025294 Bacteria 1145109
90 Ga0209758_1000012 3300025297 Bacteria 949866
91 Ga0209050_1000033 3300025298 Bacteria 442615
92 Ga0207655_1026945 3300025728 Bacteria 2749
93 Ga0207647_10049736 3300025904 Bacteria 2599
94 Ga0207647_10076598 3300025904 Bacteria 2012
95 Ga0207654_10032705 3300025911 Bacteria 2877
96 Ga0207695_10012032 3300025913 Bacteria 10407
97 Ga0207695_10013723 3300025913 Bacteria 9640
98 Ga0207695_10062476 3300025913 Unclassified 3844
99 Ga0207695_10201014 3300025913 Bacteria 1907
100 Ga0207695_10242210 3300025913 Unclassified 1704
101 Ga0207671_10001012 3300025914 Bacteria 34397
102 Ga0207671_10004572 3300025914 Bacteria 13146
103 Ga0207671_10035964 3300025914 Bacteria 3672
104 Ga0207657_10050081 3300025919 Bacteria 3636
105 Ga0207669_10055840 3300025937 Bacteria 2394
106 Ga0207667_10208049 3300025949 Bacteria 2006
107 Ga0207667_10349988 3300025949 Bacteria 1507
108 Ga0207667_10417081 3300025949 Bacteria 1366
109 Ga0207678_10015155 3300026067 Bacteria 6780
110 Ga0207702_10144119 3300026078 Bacteria 2159
111 Ga0207674_10182445 3300026116 Bacteria 2050
112 Ga0307515_10000747 3300028794 Bacteria 75231
113 Ga0316177_1200150 3300030731 Bacteria 4495
114 Ga0316176_1210989 3300030732 Bacteria 4580
115 Ga0316183_1044693 3300030742 Bacteria 20720
116 Ga0316181_1178176 3300030744 Bacteria 10532
117 Ga0307405_10000009 3300031731 Bacteria 259388
118 Ga0307407_10000001 3300031903 Bacteria 570048
119 Ga0307412_10000050 3300031911 Bacteria 151527
120 Ga0307416_100000026 3300032002 Bacteria 172622
121 Ga0307414_10001140 3300032004 Bacteria 13601
122 Ga0307414_10001649 3300032004 Bacteria 11609
123 Ga0307414_10015760 3300032004 Bacteria 4573
124 Ga0307507_10002469 3300033179 Bacteria 38697
125 Ga0307510_10005553 3300033180 Bacteria 15031
126 Ga0395899_0001025 3300037312 Bacteria 25492
127 Ga0395900_0002655 3300037418 Bacteria 19541
128 Ga0395900_0008565 3300037418 Bacteria 10516
129 Ga0395905_0001588 3300037471 Bacteria 27060
130 Ga0395901_0000565 3300038443 Bacteria 42982
131 Ga0400484_37341 3300038725 Bacteria 1844
132 Ga0436361_1026784 3300039447 Bacteria 12771
133 Ga0451841_0412151 3300041498 Bacteria 1443
134 Ga0466969_0000728 3300044656 Bacteria 17782
135 Ga0466972_0000348 3300044658 Bacteria 25310
136 Ga0466966_0002402 3300044684 Bacteria 12225
137 Ga0466961_0084933 3300044693 Bacteria 2002
138 Ga0466971_0047545 3300044719 Bacteria 1929
139 Ga0466957_0000134 3300044842 Bacteria 31410
140 Ga0466959_0030257 3300045049 Bacteria 4010
141 Ga0466958_0010817 3300045836 Bacteria 5123
142 Ga0495651_0047210 3300046462 Bacteria 3331
143 Ga0495606_0024077 3300046507 Bacteria 4399
144 Ga0495606_0039107 3300046507 Bacteria 3202
145 Ga0495610_0000048 3300046512 Bacteria 150249
146 Ga0495610_0000501 3300046512 Bacteria 39971
147 Ga0495663_0022625 3300046525 Bacteria 1817
148 Ga0495625_0001164 3300046660 Bacteria 33874
149 Ga0495687_007778 3300047443 Bacteria 6241
150 Ga0495686_0203209 3300047472 Bacteria 1136
151 Ga0496122_0007035 3300048925 Bacteria 12647
152 Ga0496123_0007090 3300048926 Bacteria 10653
153 Ga0501241_000306 3300049758 Bacteria 10693
154 nmdc:mga0k408_475_c1 3300050493 Bacteria 21995
155 Ga0500583_0025087 3300053092 Bacteria 2540
156 Ga0500651_0000520 3300053093 Bacteria 19809
157 Ga0500618_000202 3300053125 Bacteria 47506
158 Ga0500658_0108182 3300053134 Bacteria 1221
159 Ga0500588_0015529 3300053146 Bacteria 1952
160 Ga0500622_0017616 3300053156 Bacteria 3802

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053146 Ga0500588_0015529 Ga0500588_0015529_1044_1931 281
2 3300053125 Ga0500618_000202 Ga0500618_000202_14210_15172 287
3 3300053092 Ga0500583_0025087 Ga0500583_0025087_51_938 292
4 3300053093 Ga0500651_0000520 Ga0500651_0000520_18517_19419 300
5 3300003322 rootL2_10136974 rootL2_101369744 302
6 3300003323 rootH1_10009908 rootH1_1000990818 302
7 3300003323 rootH1_10122049 rootH1_101220498 303
8 3300005288 Ga0065714_10073366 Ga0065714_100733662 308
9 3300009545 Ga0105237_10058074 Ga0105237_100580743 308
10 3300053134 Ga0500658_0108182 Ga0500658_0108182_221_1189 308
11 3300037418 Ga0395900_0002655 Ga0395900_0002655_9553_10512 309
12 iso_pu_bacteria 2739367663 2739646240 310
13 iso_pu_bacteria 2738541283 2738759076 312
14 iso_pu_bacteria 2739367656 2739614872 312
15 iso_pu_bacteria 2919186247 2919190731 312
16 iso_pu_bacteria 2939664404 2939669059 312
17 3300005563 Ga0068855_100456974 Ga0068855_1004569742 313
18 3300005614 Ga0068856_100087934 Ga0068856_1000879345 313
19 3300025913 Ga0207695_10201014 Ga0207695_102010142 313
20 3300025949 Ga0207667_10417081 Ga0207667_104170812 313
21 3300026078 Ga0207702_10144119 Ga0207702_101441192 313
22 3300026116 Ga0207674_10182445 Ga0207674_101824452 313
23 iso_pu_bacteria 2585427687 2586206679 313
24 iso_pu_bacteria 2738541302 2738854985 313
25 iso_pu_bacteria 2739367651 2739586907 313
26 iso_pu_bacteria 2818991437 2819547364 313
27 iso_pu_bacteria 2842722452 2842727649 313
28 iso_pu_bacteria 2842909656 2842911146 313
29 iso_pu_bacteria 2849281842 2849283100 313
30 iso_pu_bacteria 2857627736 2857631916 313
31 iso_pu_bacteria 2945997725 2945997742 313
32 iso_pu_bacteria 2954016120 2954020195 313
33 3300010375 Ga0105239_10047488 Ga0105239_100474882 314
34 3300044719 Ga0466971_0047545 Ga0466971_0047545_719_1699 314
35 3300044842 Ga0466957_0000134 Ga0466957_0000134_1054_2022 314
36 iso_pu_bacteria 2852627209 2852631060 314
37 3300015261 Ga0182006_1000351 Ga0182006_10003518 315
38 iso_pu_bacteria 2738541278 2738730509 315
39 iso_pu_bacteria 2775506987 2776615543 315
40 iso_pu_bacteria 2842903701 2842907331 315
41 iso_pu_bacteria 2902048731 2902049592 315
42 iso_pu_bacteria 2904445276 2904447831 315
43 3300009545 Ga0105237_10006880 Ga0105237_100068807 316
44 3300013104 Ga0157370_10002681 Ga0157370_100026817 316
45 3300014497 Ga0182008_10000073 Ga0182008_1000007357 316
46 3300015261 Ga0182006_1002191 Ga0182006_10021917 316
47 3300017792 Ga0163161_10000837 Ga0163161_1000083715 316
48 3300025914 Ga0207671_10004572 Ga0207671_100045728 316
49 3300048925 Ga0496122_0007035 Ga0496122_0007035_4397_5347 316
50 3300048926 Ga0496123_0007090 Ga0496123_0007090_385_1335 316
51 3300003781 Ga0055536_1000006 Ga0055536_1000006293 317
52 3300003791 Ga0055530_10000679 Ga0055530_1000067925 317
53 3300005288 Ga0065714_10064558 Ga0065714_1006455832 317
54 3300005288 Ga0065714_10098641 Ga0065714_100986411 317
55 3300009036 Ga0105244_10005960 Ga0105244_100059608 317
56 3300013102 Ga0157371_10000025 Ga0157371_10000025139 317
57 3300013104 Ga0157370_10000383 Ga0157370_1000038334 317
58 3300013105 Ga0157369_10000164 Ga0157369_1000016462 317
59 3300015261 Ga0182006_1000546 Ga0182006_10005469 317
60 3300015262 Ga0182007_10000005 Ga0182007_1000000560 317
61 3300015682 Ga0183373_1002 Ga0183373_1002645 317
62 3300017792 Ga0163161_10000135 Ga0163161_1000013564 317
63 3300017792 Ga0163161_10000539 Ga0163161_100005398 317
64 3300025292 Ga0209676_1000039 Ga0209676_1000039388 317
65 3300025298 Ga0209050_1000033 Ga0209050_100003361 317
66 3300025728 Ga0207655_1026945 Ga0207655_10269453 317
67 3300031731 Ga0307405_10000009 Ga0307405_10000009218 317
68 3300031903 Ga0307407_10000001 Ga0307407_10000001396 317
69 3300032002 Ga0307416_100000026 Ga0307416_100000026157 317
70 3300032004 Ga0307414_10015760 Ga0307414_100157605 317
71 3300037418 Ga0395900_0008565 Ga0395900_0008565_1464_2417 317
72 3300037471 Ga0395905_0001588 Ga0395905_0001588_2230_3183 317
73 3300038443 Ga0395901_0000565 Ga0395901_0000565_1502_2455 317
74 3300046507 Ga0495606_0024077 Ga0495606_0024077_2777_3730 317
75 3300046512 Ga0495610_0000048 Ga0495610_0000048_122922_123875 317
76 3300046512 Ga0495610_0000501 Ga0495610_0000501_23757_24710 317
77 3300046525 Ga0495663_0022625 Ga0495663_0022625_537_1490 317
78 3300003322 rootL2_10156444 rootL2_101564447 318
79 3300009174 Ga0105241_10030973 Ga0105241_100309734 318
80 3300009545 Ga0105237_10001478 Ga0105237_1000147813 318
81 3300025914 Ga0207671_10001012 Ga0207671_1000101218 318
82 3300002741 JGI25157J39369_1005748 JGI25157J39369_10057482 319
83 3300002773 JGI25152J39213_1000054 JGI25152J39213_100005463 319
84 3300002774 JGI25150J39212_1000003 JGI25150J39212_1000003275 319
85 3300002774 JGI25150J39212_1000004 JGI25150J39212_1000004349 319
86 3300003187 JGI25151J46595_10000002 JGI25151J46595_10000002275 319
87 3300003215 JGI25153J46596_10000015 JGI25153J46596_1000001586 319
88 3300003320 rootH2_10143988 rootH2_101439883 319
89 3300003323 rootH1_10045760 rootH1_100457605 319
90 3300005288 Ga0065714_10064803 Ga0065714_1006480312 319
91 3300005455 Ga0070663_100002213 Ga0070663_1000022135 319
92 3300005563 Ga0068855_100124184 Ga0068855_1001241843 319
93 3300005563 Ga0068855_100236525 Ga0068855_1002365252 319
94 3300005563 Ga0068855_100415041 Ga0068855_1004150412 319
95 3300005563 Ga0068855_100590083 Ga0068855_1005900832 319
96 3300005614 Ga0068856_100121172 Ga0068856_1001211722 319
97 3300005617 Ga0068859_100197715 Ga0068859_1001977152 319
98 3300006195 Ga0075366_10000587 Ga0075366_1000058717 319
99 3300009093 Ga0105240_10007681 Ga0105240_100076817 319
100 3300009093 Ga0105240_10007744 Ga0105240_1000774411 319
101 3300009093 Ga0105240_10009517 Ga0105240_100095174 319
102 3300009093 Ga0105240_10179622 Ga0105240_101796222 319
103 3300009174 Ga0105241_10060472 Ga0105241_100604723 319
104 3300009545 Ga0105237_10001876 Ga0105237_1000187620 319
105 3300009545 Ga0105237_10036511 Ga0105237_100365115 319
106 3300009553 Ga0105249_10337058 Ga0105249_103370582 319
107 3300010375 Ga0105239_10000017 Ga0105239_10000017226 319
108 3300010375 Ga0105239_10001486 Ga0105239_100014867 319
109 3300013100 Ga0157373_10000841 Ga0157373_1000084110 319
110 3300013102 Ga0157371_10003580 Ga0157371_100035806 319
111 3300013105 Ga0157369_10001079 Ga0157369_100010799 319
112 3300013296 Ga0157374_10014760 Ga0157374_100147602 319
113 3300013296 Ga0157374_10123411 Ga0157374_101234112 319
114 3300013296 Ga0157374_10180295 Ga0157374_101802952 319
115 3300013306 Ga0163162_10000065 Ga0163162_1000006558 319
116 3300013306 Ga0163162_10004456 Ga0163162_1000445610 319
117 3300013306 Ga0163162_10032489 Ga0163162_100324895 319
118 3300013307 Ga0157372_10000039 Ga0157372_10000039126 319
119 3300013307 Ga0157372_10128539 Ga0157372_101285392 319
120 3300013308 Ga0157375_10020619 Ga0157375_100206192 319
121 3300014497 Ga0182008_10000002 Ga0182008_10000002130 319
122 3300014497 Ga0182008_10000601 Ga0182008_1000060120 319
123 3300015261 Ga0182006_1034567 Ga0182006_10345672 319
124 3300021361 Ga0213872_10004533 Ga0213872_100045337 319
125 3300025245 Ga0207425_1000003 Ga0207425_1000003568 319
126 3300025250 Ga0209026_1000201 Ga0209026_100020116 319
127 3300025258 Ga0209129_1000014 Ga0209129_1000014265 319
128 3300025272 Ga0209455_1001587 Ga0209455_10015874 319
129 3300025294 Ga0209025_1000007 Ga0209025_1000007567 319
130 3300025297 Ga0209758_1000012 Ga0209758_1000012568 319
131 3300025904 Ga0207647_10049736 Ga0207647_100497362 319
132 3300025904 Ga0207647_10076598 Ga0207647_100765982 319
133 3300025911 Ga0207654_10032705 Ga0207654_100327053 319
134 3300025913 Ga0207695_10012032 Ga0207695_100120327 319
135 3300025913 Ga0207695_10013723 Ga0207695_100137237 319
136 3300025913 Ga0207695_10062476 Ga0207695_100624763 319
137 3300025913 Ga0207695_10242210 Ga0207695_102422101 319
138 3300025914 Ga0207671_10035964 Ga0207671_100359644 319
139 3300025937 Ga0207669_10055840 Ga0207669_100558403 319
140 3300025949 Ga0207667_10208049 Ga0207667_102080492 319
141 3300025949 Ga0207667_10349988 Ga0207667_103499882 319
142 3300026067 Ga0207678_10015155 Ga0207678_100151555 319
143 3300030731 Ga0316177_1200150 Ga0316177_12001502 319
144 3300030732 Ga0316176_1210989 Ga0316176_12109895 319
145 3300030742 Ga0316183_1044693 Ga0316183_104469314 319
146 3300030744 Ga0316181_1178176 Ga0316181_11781767 319
147 3300032004 Ga0307414_10001140 Ga0307414_100011406 319
148 3300033179 Ga0307507_10002469 Ga0307507_100024697 319
149 3300033180 Ga0307510_10005553 Ga0307510_100055532 319
150 3300037312 Ga0395899_0001025 Ga0395899_0001025_20580_21542 319
151 3300038725 Ga0400484_37341 Ga0400484_37341_822_1805 319
152 3300039447 Ga0436361_1026784 Ga0436361_1026784_6528_7490 319
153 3300041498 Ga0451841_0412151 Ga0451841_0412151_215_1183 319
154 3300044656 Ga0466969_0000728 Ga0466969_0000728_3247_4227 319
155 3300044658 Ga0466972_0000348 Ga0466972_0000348_14676_15644 319
156 3300044684 Ga0466966_0002402 Ga0466966_0002402_2589_3551 319
157 3300044693 Ga0466961_0084933 Ga0466961_0084933_13_975 319
158 3300045049 Ga0466959_0030257 Ga0466959_0030257_2765_3727 319
159 3300045836 Ga0466958_0010817 Ga0466958_0010817_2200_3162 319
160 3300046462 Ga0495651_0047210 Ga0495651_0047210_1936_2913 319
161 3300046507 Ga0495606_0039107 Ga0495606_0039107_2022_2996 319
162 3300046660 Ga0495625_0001164 Ga0495625_0001164_21175_22158 319
163 3300047443 Ga0495687_007778 Ga0495687_007778_4405_5367 319
164 3300047472 Ga0495686_0203209 Ga0495686_0203209_142_1119 319
165 3300049758 Ga0501241_000306 Ga0501241_000306_5108_6079 319
166 3300050493 nmdc:mga0k408_475_c1 nmdc:mga0k408_475_c1_9798_10781 319
167 3300053156 Ga0500622_0017616 Ga0500622_0017616_748_1716 319
168 3300005339 Ga0070660_100249762 Ga0070660_1002497622 320
169 3300025919 Ga0207657_10050081 Ga0207657_100500814 320
170 iso_pu_bacteria 2738543023 2739302278 325
171 3300028794 Ga0307515_10000747 Ga0307515_1000074721 327
172 2162886007 SwRhRL2b_contig_2276363 SwRhRL2b_0434.00002780 328
173 3300005289 Ga0065704_10000670 Ga0065704_1000067011 328
174 3300013100 Ga0157373_10000262 Ga0157373_100002624 328
175 3300013102 Ga0157371_10003607 Ga0157371_100036077 328
176 3300013104 Ga0157370_10022023 Ga0157370_100220236 328
177 3300013104 Ga0157370_10031196 Ga0157370_100311962 328
178 3300013308 Ga0157375_10003754 Ga0157375_1000375415 328
179 3300015261 Ga0182006_1002306 Ga0182006_10023068 328
180 3300031911 Ga0307412_10000050 Ga0307412_1000005076 328
181 3300032004 Ga0307414_10001649 Ga0307414_100016494 328
182 iso_pu_bacteria 2738541284 2738761811 328

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01944

SpoIIM

Stage II sporulation protein M

121

300

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
6c0f-assembly1.cif.gz_h yeast nucleolar pre-60s ribosomal subunit (state 2) 0.7995 33 85
5apn-assembly1.cif.gz_h structure of the yeast 60s ribosomal subunit in complex with arx1, alb1 and n-terminally tagged rei1 0.7444 26 85
7q0f-assembly1.cif.gz_AI structure of candida albicans 80s ribosome in complex with phyllanthoside 0.6878 23 86
7of1-assembly1.cif.gz_h nog1-tap associated immature ribosomal particle population a from s. cerevisiae 0.662 23 85
4bem-assembly1.cif.gz_J crystal structure of the f-type atp synthase c-ring from acetobacterium woodii. 0.461 157 318
ID Description Score Start End Superfamily
4dmwA01 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1; 0.6914 14 82 1.20.58.1190
2vkdC01 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1; 0.6619 24 82 1.20.58.1190
4hwcA00 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1;BAG domain 0.6469 13 78 1.20.58.120
af_O69662_1_106_1.20.120.330 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Nucleotidyltransferases 0.6133 13 103 1.20.120.330
4dmwA01 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1; 0.5874 14 82 1.20.58.1190
ID Description Score Start End GO Terms
AF-A0A520B1X1-F1-model_v4 Stage II sporulation protein M 0.9928 114 323 GO:0016020
AF-A0A4Q3AW38-F1-model_v4 Stage II sporulation protein M 0.9871 78 327 GO:0016020
AF-A0A4Q3SK05-F1-model_v4 Stage II sporulation protein M 0.9859 94 325 GO:0016020
AF-A0A519N1D4-F1-model_v4 Stage II sporulation protein M 0.9831 84 327 GO:0016020
AF-A0A0M3CFY5-F1-model_v4 deleted 0.9826 107 323

Feature Viewer

pLDDT pTM Quality
85.59 0.7 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map