F278870

General Info

Members Datasets Scaffolds Average Seq Length
182 119 364 211

Family's Representative Sequence

Representative Sequence 3300005937|Ga0081455_10025059|Ga0081455_100250594
Length 249
Sequence MMSPGSSDLRAPKGFERPRPSSRTEQADLPRVYDDNLVAMTTLRVLIADDHPLYRDGLRTALAAAGFDVVGEAADGRQAVALSLELQPDVVIMDLDMPGTGGIEATRRIAHNSPHVAILVLTMLADDESVFAALRAGARGYLLKGAGQAEIVRAVQTVADGGGVFGASVARRVMEHFSGQHASEPFPELTEREREILGMVAAGQNNAAIAARLALAPKTVRNHISNILTKLHVSDRAQAIIRARTAGLG

Samples

Sample ID Description Type Environment
1 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
2 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
3 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
4 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
5 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
6 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
7 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
8 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
9 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
10 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
11 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
12 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
13 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
14 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
15 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
16 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
17 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
18 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
19 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
20 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
21 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
22 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
23 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
24 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
25 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
28 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
29 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
30 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
31 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
32 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
33 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
34 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
35 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
36 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
37 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
46 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
47 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
48 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
49 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
50 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
51 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
52 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
53 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
54 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
55 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
56 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
57 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
58 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
59 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
60 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
61 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
62 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
63 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
64 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
65 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
66 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
67 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
68 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
69 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
70 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
71 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
72 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
73 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
74 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
75 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
76 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
77 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
78 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
79 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
80 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
81 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
82 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
83 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
84 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
85 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
86 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
87 3300049514 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A25_B_5_drought Metagenome Rhizosphere
88 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
98 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
99 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
100 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
101 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
102 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
103 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
104 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
105 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
106 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
107 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
108 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
109 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
110 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
111 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
112 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
113 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
114 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
115 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
116 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
117 2867369537 Streptomyces sp. Z26 Isolate Unclassified
118 2902837492 Mycolicibacterium sp. P1-18 Isolate Unclassified
119 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.25
Metatranscriptomes 0
Isolates 2.75

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.65
Nodule 0
Rhizoplane 1.65
Rhizosphere 93.41
Stem 0
Stem Tuber 0
Unclassified 9.34

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0081455_10025059 3300005937 Bacteria 5512
2 Ga0070660_100147926 3300005339 Bacteria 1888
3 Ga0070689_100250216 3300005340 Bacteria 1462
4 Ga0070688_100200127 3300005365 Bacteria 1397
5 Ga0070694_100387009 3300005444 Unclassified 1092
6 Ga0070708_100181315 3300005445 Bacteria 1968
7 Ga0070706_100001619 3300005467 Bacteria 23489
8 Ga0070706_100013394 3300005467 Bacteria 7580
9 Ga0070706_100024987 3300005467 Bacteria 5499
10 Ga0070707_100023308 3300005468 Bacteria 5856
11 Ga0070707_100034273 3300005468 Bacteria 4842
12 Ga0070707_100052556 3300005468 Bacteria 3907
13 Ga0070707_100331352 3300005468 Bacteria 1479
14 Ga0070698_100023548 3300005471 Bacteria 6437
15 Ga0070698_100039567 3300005471 Bacteria 4852
16 Ga0070699_100050418 3300005518 Bacteria 3604
17 Ga0070699_100438844 3300005518 Bacteria 1183
18 Ga0070697_100267657 3300005536 Bacteria 1464
19 Ga0070697_100469224 3300005536 Bacteria 1098
20 Ga0070697_100858469 3300005536 Unclassified 804
21 Ga0068853_100073384 3300005539 Bacteria 2983
22 Ga0070686_100354852 3300005544 Bacteria 1103
23 Ga0070695_100292240 3300005545 Bacteria 1202
24 Ga0070704_100055769 3300005549 Bacteria 2803
25 Ga0068852_100144218 3300005616 Bacteria 2207
26 Ga0081455_10000377 3300005937 Bacteria 59204
27 Ga0081455_10140685 3300005937 Bacteria 1874
28 Ga0081455_10317868 3300005937 Bacteria 1110
29 Ga0081538_10001583 3300005981 Bacteria 23361
30 Ga0081538_10003445 3300005981 Bacteria 14938
31 Ga0081538_10004024 3300005981 Bacteria 13678
32 Ga0075363_100018091 3300006048 Bacteria 3505
33 Ga0075363_100050505 3300006048 Bacteria 2216
34 Ga0075432_10006064 3300006058 Bacteria 4113
35 Ga0075428_100260393 3300006844 Bacteria 1868
36 Ga0075428_101258183 3300006844 Unclassified 779
37 Ga0075430_100005143 3300006846 Bacteria 11014
38 Ga0075431_100038084 3300006847 Bacteria 4951
39 Ga0075433_10014008 3300006852 Bacteria 6538
40 Ga0075433_10226731 3300006852 Bacteria 1659
41 Ga0075434_100037345 3300006871 Bacteria 4809
42 Ga0111539_10015946 3300009094 Bacteria 9335
43 Ga0111539_10947211 3300009094 Bacteria 1001
44 Ga0114129_10028696 3300009147 Bacteria 7884
45 Ga0114129_10148000 3300009147 Unclassified 3216
46 Ga0105243_10032247 3300009148 Bacteria 4046
47 Ga0105242_10618306 3300009176 Bacteria 1049
48 Ga0105237_10749108 3300009545 Bacteria 983
49 Ga0105238_10010473 3300009551 Bacteria 9307
50 Ga0105238_10875164 3300009551 Bacteria 916
51 Ga0105249_11250422 3300009553 Bacteria 814
52 Ga0105239_10002199 3300010375 Bacteria 25091
53 Ga0105239_10601251 3300010375 Bacteria 1254
54 Ga0105239_11058971 3300010375 Bacteria 933
55 Ga0105246_10065064 3300011119 Unclassified 2549
56 Ga0157378_10178190 3300013297 Bacteria 1998
57 Ga0157372_10840530 3300013307 Bacteria 1066
58 Ga0157372_11385507 3300013307 Bacteria 811
59 Ga0163163_10576175 3300014325 Bacteria 1188
60 Ga0207684_10011680 3300025910 Bacteria 7663
61 Ga0207684_10013252 3300025910 Bacteria 7135
62 Ga0207684_10024313 3300025910 Bacteria 5166
63 Ga0207684_10809217 3300025910 Unclassified 792
64 Ga0207671_10181827 3300025914 Bacteria 1636
65 Ga0207657_10116156 3300025919 Bacteria 2205
66 Ga0207646_10013563 3300025922 Bacteria 7786
67 Ga0207646_10031738 3300025922 Bacteria 4781
68 Ga0207646_10038268 3300025922 Bacteria 4322
69 Ga0207694_10132332 3300025924 Bacteria 2000
70 Ga0207706_10221850 3300025933 Bacteria 1655
71 Ga0207658_10391398 3300025986 Bacteria 1220
72 Ga0207639_10027101 3300026041 Bacteria 4170
73 Ga0207428_10003477 3300027907 Bacteria 15280
74 Ga0207428_10088709 3300027907 Unclassified 2405
75 Ga0307511_10117258 3300030521 Bacteria 1664
76 Ga0316579_10014718 3300031691 Unclassified 3389
77 Ga0316579_10015484 3300031691 Bacteria 3313
78 Ga0316576_10262181 3300031727 Unclassified 1296
79 Ga0316576_10340160 3300031727 Bacteria 1117
80 Ga0316578_10024958 3300031728 Bacteria 3356
81 Ga0316578_10083241 3300031728 Bacteria 1905
82 Ga0316578_10417534 3300031728 Unclassified 794
83 Ga0307405_10217809 3300031731 Bacteria 1399
84 Ga0316577_10010105 3300031733 Bacteria 5086
85 Ga0316577_10061613 3300031733 Bacteria 2094
86 Ga0316577_10208900 3300031733 Bacteria 1103
87 Ga0307410_10001961 3300031852 Bacteria 9665
88 Ga0307410_10890211 3300031852 Bacteria 762
89 Ga0307406_10171115 3300031901 Bacteria 1572
90 Ga0307407_10215411 3300031903 Bacteria 1295
91 Ga0307407_10548538 3300031903 Bacteria 854
92 Ga0307409_100036778 3300031995 Bacteria 3602
93 Ga0307409_100065491 3300031995 Bacteria 2860
94 Ga0307409_100264275 3300031995 Bacteria 1581
95 Ga0307416_100117520 3300032002 Unclassified 2361
96 Ga0307416_100398366 3300032002 Bacteria 1413
97 Ga0307416_100649484 3300032002 Bacteria 1139
98 Ga0307415_100003566 3300032126 Bacteria 7943
99 Ga0307415_100149712 3300032126 Bacteria 1795
100 Ga0307415_100553520 3300032126 Bacteria 1015
101 Ga0316585_10005657 3300032137 Unclassified 3535
102 Ga0316585_10040802 3300032137 Bacteria 1478
103 Ga0316580_10063008 3300032139 Bacteria 1138
104 Ga0316574_0011212 3300035398 Bacteria 5090
105 Ga0316574_0016866 3300035398 Bacteria 4263
106 Ga0316574_0075777 3300035398 Unclassified 2131
107 Ga0316574_0088383 3300035398 Bacteria 1973
108 Ga0316574_0280415 3300035398 Unclassified 1061
109 Ga0373947_0267586 3300035725 Bacteria 1134
110 Ga0373937_0241300 3300036401 Bacteria 1703
111 Ga0316582_0024151 3300036647 Bacteria 3634
112 Ga0316582_0329096 3300036647 Bacteria 1051
113 Ga0316584_0055236 3300036712 Unclassified 2973
114 Ga0316584_0303181 3300036712 Bacteria 1156
115 Ga0316584_0307009 3300036712 Bacteria 1147
116 Ga0395899_0264519 3300037312 Bacteria 1175
117 Ga0395900_0141257 3300037418 Unclassified 2466
118 Ga0395898_0304000 3300037466 Bacteria 1522
119 Ga0316581_0038892 3300037588 Bacteria 1447
120 Ga0316581_0058397 3300037588 Bacteria 1183
121 Ga0436363_0185070 3300039450 Bacteria 2441
122 Ga0451800_1358726 3300041459 Bacteria 839
123 Ga0466969_0011209 3300044656 Bacteria 4745
124 Ga0466972_0025894 3300044658 Bacteria 2906
125 Ga0466972_0053029 3300044658 Bacteria 1953
126 Ga0466972_0094088 3300044658 Bacteria 1420
127 Ga0466965_0072976 3300044683 Bacteria 1727
128 Ga0466966_0035269 3300044684 Bacteria 3232
129 Ga0466966_0053742 3300044684 Bacteria 2555
130 Ga0466961_0238328 3300044693 Bacteria 1118
131 Ga0466963_0025486 3300044694 Bacteria 3772
132 Ga0466971_0017947 3300044719 Bacteria 3133
133 Ga0466970_0046143 3300044765 Bacteria 2320
134 Ga0466957_0001871 3300044842 Bacteria 11131
135 Ga0466960_0001148 3300044901 Bacteria 9509
136 Ga0466960_0081637 3300044901 Bacteria 1631
137 Ga0466959_0028457 3300045049 Bacteria 4144
138 Ga0466958_0076472 3300045836 Bacteria 2055
139 Ga0466967_0037861 3300045976 Bacteria 4132
140 Ga0496112_0204962 3300048915 Bacteria 1930
141 Ga0496113_0184526 3300048916 Bacteria 1654
142 Ga0496126_0005077 3300048929 Bacteria 15266
143 Ga0501291_095113 3300049514 Bacteria 614
144 Ga0501031_0025190 3300049568 Bacteria 3880
145 Ga0501036_0047448 3300049572 Bacteria 3637
146 Ga0501037_0092017 3300049573 Bacteria 2194
147 Ga0501039_0091757 3300049575 Bacteria 2367
148 Ga0501041_0037149 3300049577 Bacteria 2950
149 Ga0501042_0035931 3300049578 Bacteria 3515
150 Ga0501043_0052332 3300049579 Bacteria 3208
151 Ga0501046_0168744 3300049580 Bacteria 1643
152 Ga0501048_0005386 3300049582 Bacteria 9729
153 Ga0501069_0054781 3300049585 Bacteria 2221
154 Ga0501072_0006058 3300049588 Bacteria 9229
155 Ga0501076_0014100 3300049592 Bacteria 6010
156 Ga0501077_0005971 3300049593 Bacteria 7438
157 Ga0501079_0106345 3300049741 Bacteria 2177
158 Ga0501081_0118635 3300049743 Bacteria 1882
159 Ga0501045_0008714 3300049824 Bacteria 7073
160 nmdc:mga03n38_85865_c1 3300050490 Bacteria 1488
161 nmdc:mga05p37_160368_c1 3300050507 Unclassified 2747
162 nmdc:mga05p37_167526_c1 3300050507 Bacteria 2681
163 nmdc:mga05p37_77639_c1 3300050507 Bacteria 4089
164 nmdc:mga09592_32569_c1 3300050508 Bacteria 4346
165 nmdc:mga0qj67_109468_c1 3300050509 Bacteria 2230
166 nmdc:mga08y16_10519_c1 3300050511 Bacteria 9708
167 nmdc:mga08y16_108487_c1 3300050511 Bacteria 2890
168 nmdc:mga0n895_298293_c1 3300050512 Bacteria 1634
169 nmdc:mga0n895_42712_c1 3300050512 Bacteria 4412
170 nmdc:mga0a205_2076_c1 3300050515 Bacteria 17524
171 nmdc:mga0a205_25439_c1 3300050515 Bacteria 5640
172 Ga0501084_0003236 3300054114 Bacteria 13187
173 Ga0501082_0011810 3300060353 Bacteria 7509
174 Ga0501082_0058308 3300060353 Bacteria 3327
175 Ga0466962_0017049 3300061719 Bacteria 3499
176 Ga0466962_0091396 3300061719 Bacteria 1459
177 Ga0530510_0021148 3300061734 Bacteria 4628
178 2676490560 2675903060 Bacteria 10051191
179 2816509449 2816332139 Bacteria 9138787
180 2867370323 2867369537 Bacteria 6501581
181 2902840419 2902837492 Bacteria 6697721
182 2954003758 2954002825 Bacteria 9173742
183 Ga0081455_10025059
184 Ga0070660_100147926
185 Ga0070689_100250216
186 Ga0070688_100200127
187 Ga0070694_100387009
188 Ga0070708_100181315
189 Ga0070706_100001619
190 Ga0070706_100013394
191 Ga0070706_100024987
192 Ga0070707_100023308
193 Ga0070707_100034273
194 Ga0070707_100052556
195 Ga0070707_100331352
196 Ga0070698_100023548
197 Ga0070698_100039567
198 Ga0070699_100050418
199 Ga0070699_100438844
200 Ga0070697_100267657
201 Ga0070697_100469224
202 Ga0070697_100858469
203 Ga0068853_100073384
204 Ga0070686_100354852
205 Ga0070695_100292240
206 Ga0070704_100055769
207 Ga0068852_100144218
208 Ga0081455_10000377
209 Ga0081455_10140685
210 Ga0081455_10317868
211 Ga0081538_10001583
212 Ga0081538_10003445
213 Ga0081538_10004024
214 Ga0075363_100018091
215 Ga0075363_100050505
216 Ga0075432_10006064
217 Ga0075428_100260393
218 Ga0075428_101258183
219 Ga0075430_100005143
220 Ga0075431_100038084
221 Ga0075433_10014008
222 Ga0075433_10226731
223 Ga0075434_100037345
224 Ga0111539_10015946
225 Ga0111539_10947211
226 Ga0114129_10028696
227 Ga0114129_10148000
228 Ga0105243_10032247
229 Ga0105242_10618306
230 Ga0105237_10749108
231 Ga0105238_10010473
232 Ga0105238_10875164
233 Ga0105249_11250422
234 Ga0105239_10002199
235 Ga0105239_10601251
236 Ga0105239_11058971
237 Ga0105246_10065064
238 Ga0157378_10178190
239 Ga0157372_10840530
240 Ga0157372_11385507
241 Ga0163163_10576175
242 Ga0207684_10011680
243 Ga0207684_10013252
244 Ga0207684_10024313
245 Ga0207684_10809217
246 Ga0207671_10181827
247 Ga0207657_10116156
248 Ga0207646_10013563
249 Ga0207646_10031738
250 Ga0207646_10038268
251 Ga0207694_10132332
252 Ga0207706_10221850
253 Ga0207658_10391398
254 Ga0207639_10027101
255 Ga0207428_10003477
256 Ga0207428_10088709
257 Ga0307511_10117258
258 Ga0316579_10014718
259 Ga0316579_10015484
260 Ga0316576_10262181
261 Ga0316576_10340160
262 Ga0316578_10024958
263 Ga0316578_10083241
264 Ga0316578_10417534
265 Ga0307405_10217809
266 Ga0316577_10010105
267 Ga0316577_10061613
268 Ga0316577_10208900
269 Ga0307410_10001961
270 Ga0307410_10890211
271 Ga0307406_10171115
272 Ga0307407_10215411
273 Ga0307407_10548538
274 Ga0307409_100036778
275 Ga0307409_100065491
276 Ga0307409_100264275
277 Ga0307416_100117520
278 Ga0307416_100398366
279 Ga0307416_100649484
280 Ga0307415_100003566
281 Ga0307415_100149712
282 Ga0307415_100553520
283 Ga0316585_10005657
284 Ga0316585_10040802
285 Ga0316580_10063008
286 Ga0316574_0011212
287 Ga0316574_0016866
288 Ga0316574_0075777
289 Ga0316574_0088383
290 Ga0316574_0280415
291 Ga0373947_0267586
292 Ga0373937_0241300
293 Ga0316582_0024151
294 Ga0316582_0329096
295 Ga0316584_0055236
296 Ga0316584_0303181
297 Ga0316584_0307009
298 Ga0395899_0264519
299 Ga0395900_0141257
300 Ga0395898_0304000
301 Ga0316581_0038892
302 Ga0316581_0058397
303 Ga0436363_0185070
304 Ga0451800_1358726
305 Ga0466969_0011209
306 Ga0466972_0025894
307 Ga0466972_0053029
308 Ga0466972_0094088
309 Ga0466965_0072976
310 Ga0466966_0035269
311 Ga0466966_0053742
312 Ga0466961_0238328
313 Ga0466963_0025486
314 Ga0466971_0017947
315 Ga0466970_0046143
316 Ga0466957_0001871
317 Ga0466960_0001148
318 Ga0466960_0081637
319 Ga0466959_0028457
320 Ga0466958_0076472
321 Ga0466967_0037861
322 Ga0496112_0204962
323 Ga0496113_0184526
324 Ga0496126_0005077
325 Ga0501291_095113
326 Ga0501031_0025190
327 Ga0501036_0047448
328 Ga0501037_0092017
329 Ga0501039_0091757
330 Ga0501041_0037149
331 Ga0501042_0035931
332 Ga0501043_0052332
333 Ga0501046_0168744
334 Ga0501048_0005386
335 Ga0501069_0054781
336 Ga0501072_0006058
337 Ga0501076_0014100
338 Ga0501077_0005971
339 Ga0501079_0106345
340 Ga0501081_0118635
341 Ga0501045_0008714
342 nmdc:mga03n38_85865_c1
343 nmdc:mga05p37_160368_c1
344 nmdc:mga05p37_167526_c1
345 nmdc:mga05p37_77639_c1
346 nmdc:mga09592_32569_c1
347 nmdc:mga0qj67_109468_c1
348 nmdc:mga08y16_10519_c1
349 nmdc:mga08y16_108487_c1
350 nmdc:mga0n895_298293_c1
351 nmdc:mga0n895_42712_c1
352 nmdc:mga0a205_2076_c1
353 nmdc:mga0a205_25439_c1
354 Ga0501084_0003236
355 Ga0501082_0011810
356 Ga0501082_0058308
357 Ga0466962_0017049
358 Ga0466962_0091396
359 Ga0530510_0021148
360 2676490560
361 2816509449
362 2867370323
363 2902840419
364 2954003758

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

45

156

0.98

PF00196

GerE

Bacterial regulatory proteins, luxR family

187

243

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
7ve6-assembly1.cif.gz_B n-terminal domain of vrar 0.9802 12 140
6ekh-assembly1.cif.gz_Y crystal structure of activated chey from methanoccocus maripaludis 0.9681 11 124
4le2-assembly4.cif.gz_D-2 crystal structure of the unphosphorylated receiver domain of desr in the active state 0.9658 11 140
3eul-assembly2.cif.gz_B structure of the signal receiver domain of the putative response regulator narl from mycobacterium tuberculosis 0.9657 11 133
7ssi-assembly1.cif.gz_C crystal structure of the desk:desr-q10a complex in the phosphotransfer state 0.9647 11 140
ID Description Score Start End Superfamily
6ekhY00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9681 11 124 3.40.50.2300
4le0B00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9676 13 140 3.40.50.2300
3eulC00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9628 13 130 3.40.50.2300
4if4D01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9595 12 149 3.40.50.2300
5hm6B00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9524 11 131 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A3N0GY29-F1-model_v4 DNA-binding response regulator 0.9927 10 144 GO:0000160
GO:0003677
AF-A0A7K0K0H6-F1-model_v4 deleted 0.9891 10 146
AF-A0A6L7EDX0-F1-model_v4 deleted 0.9818 14 148
AF-A0A6G3DJK1-F1-model_v4 Response regulator 0.9804 13 150 GO:0000160
GO:0003677
AF-A0A7V9HQS9-F1-model_v4 Response regulator transcription factor 0.98 7 148 GO:0000160
GO:0003677

Map