F277240

General Info

Members Datasets Scaffolds Average Seq Length
181 146 362 222

Family's Representative Sequence

Representative Sequence 3300009093|Ga0105240_10157135|Ga0105240_101571351
Length 248
Sequence MSDLIAQHSSLITRMRFDLLTLFPEMFTGVLGSSILKRAATKGHVSYHLHQLRDFTTDPHKKVDDRPFGGGPGMVLMCQPVIEAVAAIEKMDDAPVVPVILAPTGEKFSQGIAEELSRLPRLLLIAGHYEGFDERIHEILKPRGLREISLGDYVLSGGELPAMVLLDAVVRLVPGVLGDDQSPHNESFGTGDATINGGLEYPHYTRPREFQGLPVPEILFSGNHGAVEAWRREQAKKRTAERRPDLLK

Samples

Sample ID Description Type Environment
1 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
8 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
16 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
17 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
18 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
21 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
26 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
27 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
28 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
31 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
32 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
33 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
34 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
36 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
37 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
38 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
39 3300009986 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_92 metaG Metagenome Rhizosphere
40 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
41 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
42 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
43 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
46 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
47 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
48 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
49 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
50 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
51 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
52 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
53 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
54 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
55 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
78 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
79 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
80 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
81 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
82 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
83 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
84 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
85 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
86 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
87 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
88 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
89 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
90 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
91 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
92 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
93 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
94 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
95 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
96 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
97 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
98 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
99 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
100 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
101 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
102 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
103 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
104 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
105 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
106 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
107 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
108 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
109 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
110 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
111 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
112 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
113 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
114 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
115 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
116 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
117 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
118 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
119 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
120 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
121 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
122 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
123 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
126 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
127 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
128 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
129 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
130 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
131 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
132 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
133 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
134 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
135 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
136 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
137 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
138 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
139 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
140 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
141 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
142 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
143 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
144 2687453257 Planctomyces sp. SH-PL62 Isolate Unclassified
145 2889415604 Paludisphaera rhizosphaerae JC665 Isolate Rhizosphere
146 2920107658 Aquisphaera insulae JC669 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.24
Metatranscriptomes 1.1
Isolates 1.66

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 10.5
Rhizosphere 88.4
Stem 0
Stem Tuber 0
Unclassified 4.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105240_10157135 3300009093 Bacteria 2703
2 Ga0070683_100045953 3300005329 Bacteria 4032
3 Ga0070683_100938034 3300005329 Bacteria 830
4 Ga0070670_100185340 3300005331 Bacteria 1807
5 Ga0070677_10163063 3300005333 Unclassified 1047
6 Ga0068869_100570002 3300005334 Bacteria 953
7 Ga0070680_100093345 3300005336 Bacteria 2493
8 Ga0070680_100637388 3300005336 Bacteria 915
9 Ga0070661_100821907 3300005344 Bacteria 763
10 Ga0070669_100142465 3300005353 Bacteria 1849
11 Ga0070675_100051021 3300005354 Bacteria 3398
12 Ga0070674_100035790 3300005356 Bacteria 3327
13 Ga0070714_100007827 3300005435 Bacteria 8326
14 Ga0070711_100106264 3300005439 Bacteria 2052
15 Ga0070678_100053550 3300005456 Bacteria 2935
16 Ga0070681_10003958 3300005458 Bacteria 13966
17 Ga0070681_10707154 3300005458 Bacteria 923
18 Ga0068867_100031205 3300005459 Bacteria 3846
19 Ga0070685_10212660 3300005466 Bacteria 1263
20 Ga0070685_10759008 3300005466 Unclassified 712
21 Ga0070679_100144586 3300005530 Bacteria 2356
22 Ga0070679_100771055 3300005530 Bacteria 905
23 Ga0070684_100099097 3300005535 Bacteria 2600
24 Ga0068853_100157481 3300005539 Unclassified 2047
25 Ga0070696_100261263 3300005546 Bacteria 1313
26 Ga0070693_100380765 3300005547 Bacteria 973
27 Ga0070665_100132592 3300005548 Bacteria 2493
28 Ga0070704_100306571 3300005549 Bacteria 1325
29 Ga0068857_100569453 3300005577 Bacteria 1068
30 Ga0068861_100092472 3300005719 Bacteria 2389
31 Ga0068870_10052549 3300005840 Bacteria 2161
32 Ga0068858_100211994 3300005842 Bacteria 1833
33 Ga0097621_100293543 3300006237 Bacteria 1434
34 Ga0075428_100220342 3300006844 Bacteria 2049
35 Ga0075431_100067662 3300006847 Bacteria 3687
36 Ga0075433_10319003 3300006852 Bacteria 1375
37 Ga0068865_100008724 3300006881 Bacteria 6270
38 Ga0105240_10167086 3300009093 Bacteria 2609
39 Ga0105240_10380862 3300009093 Bacteria 1593
40 Ga0105245_10221097 3300009098 Bacteria 1827
41 Ga0105245_11344706 3300009098 Bacteria 764
42 Ga0114129_10210910 3300009147 Bacteria 2626
43 Ga0114129_10467087 3300009147 Bacteria 1653
44 Ga0105243_10082557 3300009148 Bacteria 2627
45 Ga0105243_10091827 3300009148 Bacteria 2501
46 Ga0105242_10247728 3300009176 Bacteria 1604
47 Ga0105248_10825301 3300009177 Bacteria 1046
48 Ga0105249_10118510 3300009553 Bacteria 2512
49 Ga0105033_105147 3300009986 Bacteria 1122
50 Ga0105246_10293322 3300011119 Bacteria 1310
51 Ga0157374_10483909 3300013296 Bacteria 1241
52 Ga0157378_10558299 3300013297 Unclassified 1151
53 Ga0163162_10481457 3300013306 Bacteria 1372
54 Ga0157372_10091743 3300013307 Bacteria 3454
55 Ga0157372_10347841 3300013307 Bacteria 1727
56 Ga0157375_11397704 3300013308 Bacteria 824
57 Ga0163163_10733129 3300014325 Unclassified 1052
58 Ga0157380_10427020 3300014326 Bacteria 1266
59 Ga0157379_10585840 3300014968 Bacteria 1040
60 Ga0157376_10353697 3300014969 Bacteria 1407
61 Ga0163161_10081597 3300017792 Bacteria 2381
62 Ga0206351_10875429 3300020077 Bacteria 1337
63 Ga0213872_10034010 3300021361 Bacteria 2335
64 Ga0213871_10014103 3300021441 Bacteria 1890
65 Ga0224712_10006173 3300022467 Bacteria 3393
66 Ga0207688_10049383 3300025901 Bacteria 2352
67 Ga0207643_10040915 3300025908 Bacteria 2611
68 Ga0207707_10009722 3300025912 Bacteria 8342
69 Ga0207660_10084205 3300025917 Bacteria 2344
70 Ga0207652_10029258 3300025921 Bacteria 4604
71 Ga0207681_10346669 3300025923 Bacteria 1188
72 Ga0207659_10084084 3300025926 Bacteria 2361
73 Ga0207687_10077045 3300025927 Bacteria 2397
74 Ga0207664_10040081 3300025929 Bacteria 3639
75 Ga0207644_10180203 3300025931 Bacteria 1655
76 Ga0207686_10272945 3300025934 Bacteria 1245
77 Ga0207709_10054300 3300025935 Bacteria 2470
78 Ga0207669_10019125 3300025937 Bacteria 3558
79 Ga0207669_10039095 3300025937 Bacteria 2738
80 Ga0207704_10140712 3300025938 Bacteria 1687
81 Ga0207711_10561316 3300025941 Bacteria 1065
82 Ga0207689_10266804 3300025942 Bacteria 1417
83 Ga0207661_10137978 3300025944 Bacteria 2096
84 Ga0207703_10106356 3300026035 Bacteria 2386
85 Ga0207648_10357316 3300026089 Bacteria 1318
86 Ga0207674_10729343 3300026116 Bacteria 956
87 Ga0207675_100082673 3300026118 Bacteria 3012
88 Ga0268266_10089395 3300028379 Bacteria 2697
89 Ga0265318_10050438 3300028577 Bacteria 1564
90 Ga0265338_10019031 3300028800 Bacteria 7314
91 Ga0265339_10066487 3300031249 Bacteria 1930
92 Ga0265316_10600160 3300031344 Bacteria 781
93 Ga0265314_10000899 3300031711 Bacteria 35324
94 Ga0307405_10054562 3300031731 Bacteria 2496
95 Ga0373956_0191043 3300035119 Bacteria 970
96 Ga0395901_0228376 3300038443 Bacteria 1944
97 Ga0436360_0719895 3300039438 Bacteria 3605
98 Ga0436361_1040350 3300039447 Bacteria 3050
99 Ga0436363_1688170 3300039450 Bacteria 1095
100 Ga0436362_0476251 3300039453 Bacteria 3925
101 Ga0466963_0423151 3300044694 Bacteria 939
102 Ga0466971_0076811 3300044719 Bacteria 1520
103 Ga0466957_0208302 3300044842 Bacteria 1287
104 Ga0466958_0184301 3300045836 Bacteria 1325
105 Ga0466958_0413994 3300045836 Bacteria 871
106 Ga0466967_0237582 3300045976 Bacteria 1737
107 Ga0495629_0049138 3300046459 Bacteria 2957
108 Ga0495629_0145933 3300046459 Unclassified 1645
109 Ga0495641_0036206 3300046461 Bacteria 2321
110 Ga0495608_0076779 3300046511 Bacteria 2175
111 Ga0495665_0216879 3300046531 Unclassified 990
112 Ga0495640_0410794 3300046533 Bacteria 830
113 Ga0495667_0022414 3300046559 Bacteria 4254
114 Ga0495635_0029867 3300046663 Bacteria 3790
115 Ga0495658_0160998 3300046683 Unclassified 1384
116 Ga0495671_0213545 3300046692 Bacteria 935
117 Ga0495649_0175014 3300046694 Bacteria 1122
118 Ga0495589_0140619 3300046794 Bacteria 1156
119 Ga0495674_0091563 3300047319 Bacteria 2597
120 Ga0495680_0017825 3300047322 Bacteria 6044
121 Ga0496100_0043581 3300048903 Bacteria 2870
122 Ga0496101_0071977 3300048904 Bacteria 2536
123 Ga0496102_0004840 3300048905 Bacteria 11387
124 Ga0496102_0819517 3300048905 Bacteria 853
125 Ga0496104_0970342 3300048907 Bacteria 754
126 Ga0496105_0192482 3300048908 Bacteria 1667
127 Ga0496106_0017783 3300048909 Bacteria 5257
128 Ga0496108_0019915 3300048911 Bacteria 5511
129 Ga0496109_0044546 3300048912 Bacteria 4025
130 Ga0496109_0303703 3300048912 Bacteria 1505
131 Ga0496110_0199503 3300048913 Bacteria 1818
132 Ga0496110_0335745 3300048913 Bacteria 1377
133 Ga0496111_0031522 3300048914 Bacteria 3777
134 Ga0496111_0199466 3300048914 Bacteria 1488
135 Ga0496111_0212216 3300048914 Bacteria 1438
136 Ga0496112_0338659 3300048915 Bacteria 1448
137 Ga0496114_0037280 3300048917 Bacteria 4020
138 Ga0496115_0379504 3300048918 Bacteria 1150
139 Ga0496115_0558388 3300048918 Bacteria 914
140 Ga0501032_0091087 3300049569 Bacteria 2023
141 Ga0501033_0141939 3300049570 Bacteria 1736
142 Ga0501034_0001089 3300049571 Bacteria 38296
143 Ga0501034_0001397 3300049571 Bacteria 32468
144 Ga0501034_0122896 3300049571 Bacteria 2582
145 Ga0501037_0005923 3300049573 Bacteria 8926
146 Ga0501038_0000185 3300049574 Bacteria 53588
147 Ga0501043_0000312 3300049579 Bacteria 44169
148 Ga0501046_0000098 3300049580 Bacteria 93026
149 Ga0501046_0240004 3300049580 Bacteria 1337
150 Ga0501047_0003594 3300049581 Bacteria 14626
151 Ga0501047_0074417 3300049581 Bacteria 3270
152 Ga0501047_0201879 3300049581 Bacteria 1849
153 Ga0501047_0268125 3300049581 Bacteria 1554
154 Ga0501048_0004944 3300049582 Bacteria 10167
155 Ga0501048_0239563 3300049582 Bacteria 1287
156 Ga0501069_0157317 3300049585 Bacteria 1308
157 Ga0501070_0775818 3300049586 Bacteria 754
158 Ga0501073_0030418 3300049589 Bacteria 3855
159 Ga0501073_0065551 3300049589 Bacteria 2533
160 Ga0501080_0192587 3300049742 Bacteria 1873
161 Ga0501080_0229903 3300049742 Bacteria 1695
162 Ga0501083_0000041 3300049744 Bacteria 93131
163 Ga0501035_0065313 3300049822 Bacteria 3232
164 Ga0501035_0367932 3300049822 Bacteria 1200
165 Ga0501044_0028744 3300049823 Bacteria 5866
166 Ga0501044_0031083 3300049823 Bacteria 5622
167 Ga0501044_0063927 3300049823 Bacteria 3758
168 Ga0501044_0080388 3300049823 Bacteria 3302
169 Ga0501044_0081912 3300049823 Bacteria 3266
170 nmdc:mga05p37_199565_c1 3300050507 Bacteria 2424
171 nmdc:mga06r32_121576_c1 3300050510 Bacteria 2576
172 nmdc:mga0a205_123169_c1 3300050515 Bacteria 2492
173 Ga0495601_0410919 3300053077 Bacteria 877
174 Ga0495595_0032755 3300053084 Bacteria 2342
175 Ga0501084_0140529 3300054114 Bacteria 2033
176 Ga0590075_069172 3300059424 Bacteria 912
177 Ga0501082_0100154 3300060353 Bacteria 2506
178 Ga0501082_0403694 3300060353 Bacteria 1193
179 2688066845 2687453257 Bacteria 6784659
180 2889415715 2889415604 Bacteria 8048700
181 2920109910 2920107658 Bacteria 10042636
182 Ga0105240_10157135
183 Ga0070683_100045953
184 Ga0070683_100938034
185 Ga0070670_100185340
186 Ga0070677_10163063
187 Ga0068869_100570002
188 Ga0070680_100093345
189 Ga0070680_100637388
190 Ga0070661_100821907
191 Ga0070669_100142465
192 Ga0070675_100051021
193 Ga0070674_100035790
194 Ga0070714_100007827
195 Ga0070711_100106264
196 Ga0070678_100053550
197 Ga0070681_10003958
198 Ga0070681_10707154
199 Ga0068867_100031205
200 Ga0070685_10212660
201 Ga0070685_10759008
202 Ga0070679_100144586
203 Ga0070679_100771055
204 Ga0070684_100099097
205 Ga0068853_100157481
206 Ga0070696_100261263
207 Ga0070693_100380765
208 Ga0070665_100132592
209 Ga0070704_100306571
210 Ga0068857_100569453
211 Ga0068861_100092472
212 Ga0068870_10052549
213 Ga0068858_100211994
214 Ga0097621_100293543
215 Ga0075428_100220342
216 Ga0075431_100067662
217 Ga0075433_10319003
218 Ga0068865_100008724
219 Ga0105240_10167086
220 Ga0105240_10380862
221 Ga0105245_10221097
222 Ga0105245_11344706
223 Ga0114129_10210910
224 Ga0114129_10467087
225 Ga0105243_10082557
226 Ga0105243_10091827
227 Ga0105242_10247728
228 Ga0105248_10825301
229 Ga0105249_10118510
230 Ga0105033_105147
231 Ga0105246_10293322
232 Ga0157374_10483909
233 Ga0157378_10558299
234 Ga0163162_10481457
235 Ga0157372_10091743
236 Ga0157372_10347841
237 Ga0157375_11397704
238 Ga0163163_10733129
239 Ga0157380_10427020
240 Ga0157379_10585840
241 Ga0157376_10353697
242 Ga0163161_10081597
243 Ga0206351_10875429
244 Ga0213872_10034010
245 Ga0213871_10014103
246 Ga0224712_10006173
247 Ga0207688_10049383
248 Ga0207643_10040915
249 Ga0207707_10009722
250 Ga0207660_10084205
251 Ga0207652_10029258
252 Ga0207681_10346669
253 Ga0207659_10084084
254 Ga0207687_10077045
255 Ga0207664_10040081
256 Ga0207644_10180203
257 Ga0207686_10272945
258 Ga0207709_10054300
259 Ga0207669_10019125
260 Ga0207669_10039095
261 Ga0207704_10140712
262 Ga0207711_10561316
263 Ga0207689_10266804
264 Ga0207661_10137978
265 Ga0207703_10106356
266 Ga0207648_10357316
267 Ga0207674_10729343
268 Ga0207675_100082673
269 Ga0268266_10089395
270 Ga0265318_10050438
271 Ga0265338_10019031
272 Ga0265339_10066487
273 Ga0265316_10600160
274 Ga0265314_10000899
275 Ga0307405_10054562
276 Ga0373956_0191043
277 Ga0395901_0228376
278 Ga0436360_0719895
279 Ga0436361_1040350
280 Ga0436363_1688170
281 Ga0436362_0476251
282 Ga0466963_0423151
283 Ga0466971_0076811
284 Ga0466957_0208302
285 Ga0466958_0184301
286 Ga0466958_0413994
287 Ga0466967_0237582
288 Ga0495629_0049138
289 Ga0495629_0145933
290 Ga0495641_0036206
291 Ga0495608_0076779
292 Ga0495665_0216879
293 Ga0495640_0410794
294 Ga0495667_0022414
295 Ga0495635_0029867
296 Ga0495658_0160998
297 Ga0495671_0213545
298 Ga0495649_0175014
299 Ga0495589_0140619
300 Ga0495674_0091563
301 Ga0495680_0017825
302 Ga0496100_0043581
303 Ga0496101_0071977
304 Ga0496102_0004840
305 Ga0496102_0819517
306 Ga0496104_0970342
307 Ga0496105_0192482
308 Ga0496106_0017783
309 Ga0496108_0019915
310 Ga0496109_0044546
311 Ga0496109_0303703
312 Ga0496110_0199503
313 Ga0496110_0335745
314 Ga0496111_0031522
315 Ga0496111_0199466
316 Ga0496111_0212216
317 Ga0496112_0338659
318 Ga0496114_0037280
319 Ga0496115_0379504
320 Ga0496115_0558388
321 Ga0501032_0091087
322 Ga0501033_0141939
323 Ga0501034_0001089
324 Ga0501034_0001397
325 Ga0501034_0122896
326 Ga0501037_0005923
327 Ga0501038_0000185
328 Ga0501043_0000312
329 Ga0501046_0000098
330 Ga0501046_0240004
331 Ga0501047_0003594
332 Ga0501047_0074417
333 Ga0501047_0201879
334 Ga0501047_0268125
335 Ga0501048_0004944
336 Ga0501048_0239563
337 Ga0501069_0157317
338 Ga0501070_0775818
339 Ga0501073_0030418
340 Ga0501073_0065551
341 Ga0501080_0192587
342 Ga0501080_0229903
343 Ga0501083_0000041
344 Ga0501035_0065313
345 Ga0501035_0367932
346 Ga0501044_0028744
347 Ga0501044_0031083
348 Ga0501044_0063927
349 Ga0501044_0080388
350 Ga0501044_0081912
351 nmdc:mga05p37_199565_c1
352 nmdc:mga06r32_121576_c1
353 nmdc:mga0a205_123169_c1
354 Ga0495601_0410919
355 Ga0495595_0032755
356 Ga0501084_0140529
357 Ga0590075_069172
358 Ga0501082_0100154
359 Ga0501082_0403694
360 2688066845
361 2889415715
362 2920109910

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01746

tRNA_m1G_MT

tRNA (Guanine-1)-methyltransferase

36

244

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
8byh-assembly1.cif.gz_A crystal structure of trmd domain from calditerrivibrio nitroreducens in complex with s-adenosyl-l-methionine 0.7863 2 207
8b1n-assembly1.cif.gz_B crystal structure of trmd-tm1570 from calditerrivibrio nitroreducens in complex with s-adenosyl-l-methionine 0.7832 2 206
8b1n-assembly1.cif.gz_A crystal structure of trmd-tm1570 from calditerrivibrio nitroreducens in complex with s-adenosyl-l-methionine 0.7811 2 206
8byh-assembly1.cif.gz_B crystal structure of trmd domain from calditerrivibrio nitroreducens in complex with s-adenosyl-l-methionine 0.7794 2 207
6jki-assembly1.cif.gz_B crystal structure and catalytic mechanism of the essential m1g37 trna methyltransferase trmd from pseudomonas aeruginosa 0.7742 2 207
ID Description Score Start End Superfamily
5wyrA01 Alpha Beta;3-Layer(aba) Sandwich;Alpha/beta knot;SPOUT methyltransferase, trefoil knot domain 0.877 1 156 3.40.1280.10
5zhjA02 Mainly Alpha;Orthogonal Bundle;Trp Operon Repressor; Chain A;tRNA(m1g37)methyltransferase, domain 2 0.8677 180 215 1.10.1270.20
3ky7A01 Alpha Beta;3-Layer(aba) Sandwich;Alpha/beta knot;SPOUT methyltransferase, trefoil knot domain 0.8557 1 155 3.40.1280.10
3iefB01 Alpha Beta;3-Layer(aba) Sandwich;Alpha/beta knot;SPOUT methyltransferase, trefoil knot domain 0.8542 1 158 3.40.1280.10
3ky7A01 Alpha Beta;3-Layer(aba) Sandwich;Alpha/beta knot;SPOUT methyltransferase, trefoil knot domain 0.8506 1 155 3.40.1280.10
ID Description Score Start End GO Terms
AF-A0A524PE26-F1-model_v4 tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.228) 0.915 1 155 GO:0002939
GO:0005829
GO:0052906
AF-A0A660RZG0-F1-model_v4 tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.228) 0.905 1 166 GO:0002939
GO:0005829
GO:0052906
AF-A0A832GLX8-F1-model_v4 tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.228) 0.9041 1 158 GO:0002939
GO:0005829
GO:0052906
AF-A0A7V9CW64-F1-model_v4 tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.228) (M1G-methyltransferase) (tRNA [GM37] methyltransferase) 0.9039 1 188 GO:0002939
GO:0005829
GO:0052906
AF-A0A7X9HL43-F1-model_v4 tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.228) 0.9035 1 155 GO:0002939
GO:0005829
GO:0052906

Map