F276326

General Info

Members Datasets Scaffolds Average Seq Length
180 128 356 823

Family's Representative Sequence

Representative Sequence 3300049581|Ga0501047_0003324|Ga0501047_0003324_8130_10886
Length 918
Sequence MAGVPRFRRGFRLPWRTARTLETDVDEELRFHLEMRAEELAALRGLDAAAARAEALRQFGDLEDARRYMRAMDHDTETLKRRRDRMADMQRNFRYALRALLRTPFISAVAVLSLALGIGANAAIFSLFDQMILRPLPVPHPERLVNLGAPGPKYGSTSCGQAGYCDQIFSYPTYRGLERAGPGISLAAHRDFGANLAFRHATANGEGALVSGSYFTVLGLRPAVGRLLGPADDQKIGGDFVAVLSYDYWRNHLGADPGVVGQLLVINGQSMTIVGVAPKGFEGTVLGARPWVFVPLTMRGLMSPGVQGFDEPRNYWIYVFGRLKPGVDLEHARTLINAVYHPIIENTEGPLQQGNTEKAMQEFRAMQVTVEPGARGQSRVHGEVRTPLTLLLTITGIVLLIACANIANLLLARGAARRMEMTVRLALGASRRQVLAQLLTESILLAVIGGAVSLLVAYWTLGLIGSTLPAADAGALPLHLQPPVLLFTAGLSLLTGLLFGMFPALHSTRLDLISSIRAGAGQITGARAAARFRTGLVVAQIALSMALLIFAGLFLRSLMNISRVDLGVRTDNVVTFDVSPQLNGYQPERSRILFERLAEELASIPGVTAASAGRAALFAGSNWGNNVSVQGFKSGPDIDSHSRFNMVGPGYFHTLGVPVLSGREFTDADRVGAPKVAVVNEAFAKKFHLGRDVVGKWIGTSGGDSLDTQIVGLVKDAKYSEVKDEVPPLYFQPYRQKRVGSLTFYVRTAGDLNTVMRAIPGVVSKLDPNLPVEGLKTLPQQVKENVSLDRLISTLSGAFAVLATLLATIGLYGVLAYTVAQRSREIGVRMALGADARRVRRLVLSQVGRMILVGGVIGLAAALLLGRYARSLLFDLQGYDAVTLIVAPLLLAAVALGAGYLPARRASRVDPVETLRAQ

Samples

Sample ID Description Type Environment
1 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
9 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
10 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
13 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
14 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
18 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
19 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
20 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
21 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
22 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
23 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
24 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
25 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
26 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
27 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
28 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
29 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
30 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
31 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
32 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
33 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
34 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
36 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
37 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
38 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
39 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
40 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
41 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
42 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
43 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
44 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
45 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
46 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
47 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
71 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
72 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
73 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
74 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
75 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
76 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
77 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
78 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
79 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
80 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
81 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
82 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
83 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
84 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
85 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
86 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
87 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
88 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
89 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
90 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
91 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
92 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
93 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
94 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
95 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
96 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
97 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
98 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
99 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
100 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
101 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
102 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
103 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
104 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
105 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
106 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
107 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
108 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
109 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
110 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
111 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
112 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
113 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
114 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
118 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
119 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
121 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
122 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
123 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
124 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
125 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
126 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
127 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
128 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.67
Rhizosphere 97.22
Stem 0
Stem Tuber 0
Unclassified 5.56

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501047_0003324 3300049581 Bacteria 15228
2 Ga0070658_10004036 3300005327 Bacteria 12028
3 Ga0070658_10046642 3300005327 Bacteria 3506
4 Ga0070683_100002133 3300005329 Bacteria 15626
5 Ga0070666_10023555 3300005335 Unclassified 4008
6 Ga0070680_100024231 3300005336 Unclassified 4844
7 Ga0070689_100006681 3300005340 Bacteria 8015
8 Ga0070675_100015903 3300005354 Bacteria 5959
9 Ga0070671_100018058 3300005355 Bacteria 5724
10 Ga0070709_10007211 3300005434 Bacteria 6091
11 Ga0070709_10025279 3300005434 Bacteria 3507
12 Ga0070714_100002131 3300005435 Bacteria 14544
13 Ga0070714_100005946 3300005435 Bacteria 9365
14 Ga0070714_100052668 3300005435 Bacteria 3472
15 Ga0070713_100000072 3300005436 Bacteria 64154
16 Ga0070713_100000244 3300005436 Bacteria 35860
17 Ga0070713_100018718 3300005436 Bacteria 5268
18 Ga0070705_100001916 3300005440 Bacteria 10687
19 Ga0070679_100000222 3300005530 Bacteria 46466
20 Ga0070679_100055900 3300005530 Bacteria 3931
21 Ga0070684_100008352 3300005535 Bacteria 8087
22 Ga0070684_100017796 3300005535 Bacteria 5840
23 Ga0070665_100003231 3300005548 Bacteria 17518
24 Ga0070665_100007092 3300005548 Bacteria 11384
25 Ga0070665_100054313 3300005548 Bacteria 4018
26 Ga0068856_100012308 3300005614 Bacteria 8284
27 Ga0068852_100012226 3300005616 Bacteria 6508
28 Ga0068859_100047447 3300005617 Bacteria 4315
29 Ga0068859_100079225 3300005617 Bacteria 3325
30 Ga0068859_100107377 3300005617 Bacteria 2851
31 Ga0068864_100016131 3300005618 Bacteria 6216
32 Ga0068863_100056705 3300005841 Unclassified 3709
33 Ga0068858_100023721 3300005842 Bacteria 5715
34 Ga0068862_100025427 3300005844 Bacteria 4971
35 Ga0070717_10001061 3300006028 Bacteria 18453
36 Ga0070717_10004147 3300006028 Bacteria 10445
37 Ga0070717_10004725 3300006028 Bacteria 9897
38 Ga0070712_100034313 3300006175 Unclassified 3438
39 Ga0068871_100040436 3300006358 Bacteria 3735
40 Ga0075428_100040268 3300006844 Bacteria 5142
41 Ga0075431_100021310 3300006847 Bacteria 6624
42 Ga0075429_100008471 3300006880 Bacteria 8953
43 Ga0068865_100003774 3300006881 Bacteria 9095
44 Ga0097620_100047448 3300006931 Bacteria 4315
45 Ga0097620_100079227 3300006931 Bacteria 3325
46 Ga0097620_100107380 3300006931 Bacteria 2851
47 Ga0075435_100000620 3300007076 Bacteria 21825
48 Ga0105240_10005993 3300009093 Bacteria 17972
49 Ga0105247_10001967 3300009101 Bacteria 14278
50 Ga0114129_10000600 3300009147 Bacteria 44447
51 Ga0114129_10005880 3300009147 Bacteria 17378
52 Ga0114129_10116960 3300009147 Bacteria 3674
53 Ga0105237_10037760 3300009545 Bacteria 4881
54 Ga0105238_10036543 3300009551 Bacteria 4994
55 Ga0157373_10019428 3300013100 Unclassified 4944
56 Ga0157371_10014085 3300013102 Bacteria 6049
57 Ga0157370_10056003 3300013104 Bacteria 3754
58 Ga0157369_10001366 3300013105 Bacteria 30083
59 Ga0157369_10034650 3300013105 Bacteria 5538
60 Ga0163162_10037527 3300013306 Bacteria 4836
61 Ga0157372_10009861 3300013307 Bacteria 10157
62 Ga0157372_10021651 3300013307 Bacteria 6949
63 Ga0157372_10082456 3300013307 Bacteria 3641
64 Ga0157375_10029485 3300013308 Bacteria 5161
65 Ga0163163_10088513 3300014325 Bacteria 3108
66 Ga0157379_10030158 3300014968 Bacteria 4824
67 Ga0213876_10005961 3300021384 Bacteria 6658
68 Ga0207699_10010403 3300025906 Bacteria 4667
69 Ga0207705_10015392 3300025909 Bacteria 5488
70 Ga0207707_10001721 3300025912 Bacteria 20121
71 Ga0207695_10008367 3300025913 Bacteria 12960
72 Ga0207695_10025323 3300025913 Bacteria 6646
73 Ga0207695_10034039 3300025913 Bacteria 5548
74 Ga0207695_10051402 3300025913 Bacteria 4328
75 Ga0207693_10007169 3300025915 Bacteria 9185
76 Ga0207693_10009047 3300025915 Bacteria 8127
77 Ga0207693_10031310 3300025915 Unclassified 4202
78 Ga0207652_10046121 3300025921 Bacteria 3717
79 Ga0207694_10031219 3300025924 Bacteria 4067
80 Ga0207659_10067565 3300025926 Bacteria 2597
81 Ga0207687_10019631 3300025927 Bacteria 4480
82 Ga0207700_10000277 3300025928 Bacteria 30584
83 Ga0207664_10011109 3300025929 Bacteria 6380
84 Ga0207664_10024796 3300025929 Bacteria 4510
85 Ga0207686_10010023 3300025934 Bacteria 5154
86 Ga0207686_10013000 3300025934 Bacteria 4595
87 Ga0207665_10051826 3300025939 Unclassified 2764
88 Ga0207691_10017837 3300025940 Bacteria 6727
89 Ga0207691_10031589 3300025940 Bacteria 4940
90 Ga0207711_10019706 3300025941 Bacteria 5618
91 Ga0207661_10005060 3300025944 Bacteria 9255
92 Ga0207661_10009254 3300025944 Bacteria 7058
93 Ga0207679_10007100 3300025945 Bacteria 7098
94 Ga0207667_10029314 3300025949 Bacteria 5969
95 Ga0207651_10052935 3300025960 Bacteria 2771
96 Ga0207702_10010258 3300026078 Bacteria 7848
97 Ga0207675_100008515 3300026118 Bacteria 9650
98 Ga0268266_10032018 3300028379 Bacteria 4468
99 Ga0268266_10042725 3300028379 Bacteria 3872
100 Ga0268265_10014216 3300028380 Bacteria 5421
101 Ga0307405_10000431 3300031731 Bacteria 15673
102 Ga0307405_10037761 3300031731 Bacteria 2905
103 Ga0307413_10002287 3300031824 Bacteria 7747
104 Ga0307410_10001981 3300031852 Bacteria 9632
105 Ga0307410_10008812 3300031852 Bacteria 5621
106 Ga0307416_100000912 3300032002 Bacteria 15587
107 Ga0307416_100012967 3300032002 Bacteria 5643
108 Ga0307416_100053721 3300032002 Bacteria 3234
109 Ga0307414_10018827 3300032004 Bacteria 4263
110 Ga0307411_10003303 3300032005 Bacteria 7454
111 Ga0307415_100003546 3300032126 Bacteria 7959
112 Ga0373926_0006346 3300035083 Bacteria 3926
113 Ga0373944_0007415 3300035089 Bacteria 2941
114 Ga0373945_0005516 3300035116 Bacteria 4051
115 Ga0373943_0001561 3300035170 Bacteria 10364
116 Ga0373935_0000219 3300035692 Bacteria 27677
117 Ga0373947_0000570 3300035725 Bacteria 21527
118 Ga0373925_0000764 3300037068 Bacteria 29537
119 Ga0395905_0046370 3300037471 Bacteria 4075
120 Ga0395905_0105596 3300037471 Bacteria 2645
121 Ga0395901_0003861 3300038443 Bacteria 15077
122 Ga0436365_1296146 3300039437 Bacteria 8042
123 Ga0466967_0018847 3300045976 Bacteria 5532
124 Ga0495603_0000562 3300046455 Bacteria 20800
125 Ga0495603_0001728 3300046455 Bacteria 12869
126 Ga0495651_0021767 3300046462 Unclassified 4984
127 Ga0495653_0013478 3300046463 Bacteria 6661
128 Ga0495580_0002017 3300046472 Bacteria 17879
129 Ga0495580_0044378 3300046472 Unclassified 3162
130 Ga0495582_0001715 3300046473 Bacteria 12363
131 Ga0495639_0000508 3300046475 Bacteria 18386
132 Ga0495594_0011204 3300046499 Bacteria 4656
133 Ga0495608_0007354 3300046511 Bacteria 7786
134 Ga0495628_0031416 3300046516 Bacteria 4296
135 Ga0495630_0001130 3300046517 Bacteria 18408
136 Ga0495665_0000137 3300046531 Bacteria 35494
137 Ga0495665_0002987 3300046531 Bacteria 9138
138 Ga0495587_0001128 3300046536 Bacteria 17458
139 Ga0495587_0024248 3300046536 Bacteria 3720
140 Ga0495645_0014072 3300046543 Bacteria 5669
141 Ga0495667_0004710 3300046559 Bacteria 9224
142 Ga0495667_0007056 3300046559 Bacteria 7626
143 Ga0495588_0000380 3300046674 Bacteria 25738
144 Ga0495657_0018037 3300046675 Bacteria 5116
145 Ga0495623_0017972 3300046679 Bacteria 4567
146 Ga0495658_0000248 3300046683 Bacteria 30893
147 Ga0495658_0011955 3300046683 Bacteria 4381
148 Ga0495581_0000687 3300047315 Bacteria 17751
149 Ga0495581_0021108 3300047315 Bacteria 3777
150 Ga0495680_0075282 3300047322 Unclassified 2561
151 Ga0495675_0019081 3300047444 Bacteria 4356
152 Ga0495593_0000178 3300047673 Bacteria 32900
153 Ga0495593_0005387 3300047673 Bacteria 7564
154 Ga0495614_0000297 3300048089 Bacteria 19603
155 Ga0495614_0009337 3300048089 Bacteria 4338
156 Ga0496104_0033180 3300048907 Bacteria 4807
157 Ga0496108_0011440 3300048911 Bacteria 7213
158 Ga0496112_0073714 3300048915 Bacteria 3375
159 Ga0501033_0006081 3300049570 Bacteria 9468
160 Ga0501034_0035753 3300049571 Bacteria 5035
161 Ga0501036_0047196 3300049572 Bacteria 3648
162 Ga0501047_0042259 3300049581 Bacteria 4405
163 Ga0501070_0021473 3300049586 Bacteria 5416
164 Ga0501073_0003054 3300049589 Bacteria 12558
165 Ga0501035_0003344 3300049822 Bacteria 15372
166 Ga0501035_0083729 3300049822 Bacteria 2814
167 Ga0501044_0026781 3300049823 Bacteria 6101
168 nmdc:mga05p37_11311_c2 3300050507 Bacteria 5505
169 nmdc:mga05p37_11_c1 3300050507 Bacteria 149577
170 nmdc:mga09592_6134_c1 3300050508 Bacteria 9790
171 nmdc:mga0qj67_51077_c1 3300050509 Bacteria 3269
172 nmdc:mga0qj67_5248_c1 3300050509 Bacteria 9448
173 nmdc:mga0qj67_6030_c1 3300050509 Bacteria 8876
174 nmdc:mga06r32_78855_c1 3300050510 Bacteria 3202
175 nmdc:mga08y16_47039_c1 3300050511 Bacteria 4516
176 nmdc:mga0n895_62647_c1 3300050512 Bacteria 3677
177 nmdc:mga0rr50_349_c1 3300050513 Bacteria 25202
178 nmdc:mga08x19_16439_c1 3300050514 Bacteria 4515
179 Ga0501047_0003324
180 Ga0070658_10004036
181 Ga0070658_10046642
182 Ga0070683_100002133
183 Ga0070666_10023555
184 Ga0070680_100024231
185 Ga0070689_100006681
186 Ga0070675_100015903
187 Ga0070671_100018058
188 Ga0070709_10007211
189 Ga0070709_10025279
190 Ga0070714_100002131
191 Ga0070714_100005946
192 Ga0070714_100052668
193 Ga0070713_100000072
194 Ga0070713_100000244
195 Ga0070713_100018718
196 Ga0070705_100001916
197 Ga0070679_100000222
198 Ga0070679_100055900
199 Ga0070684_100008352
200 Ga0070684_100017796
201 Ga0070665_100003231
202 Ga0070665_100007092
203 Ga0070665_100054313
204 Ga0068856_100012308
205 Ga0068852_100012226
206 Ga0068859_100047447
207 Ga0068859_100079225
208 Ga0068859_100107377
209 Ga0068864_100016131
210 Ga0068863_100056705
211 Ga0068858_100023721
212 Ga0068862_100025427
213 Ga0070717_10001061
214 Ga0070717_10004147
215 Ga0070717_10004725
216 Ga0070712_100034313
217 Ga0068871_100040436
218 Ga0075428_100040268
219 Ga0075431_100021310
220 Ga0075429_100008471
221 Ga0068865_100003774
222 Ga0097620_100047448
223 Ga0097620_100079227
224 Ga0097620_100107380
225 Ga0075435_100000620
226 Ga0105240_10005993
227 Ga0105247_10001967
228 Ga0114129_10000600
229 Ga0114129_10005880
230 Ga0114129_10116960
231 Ga0105237_10037760
232 Ga0105238_10036543
233 Ga0157373_10019428
234 Ga0157371_10014085
235 Ga0157370_10056003
236 Ga0157369_10001366
237 Ga0157369_10034650
238 Ga0163162_10037527
239 Ga0157372_10009861
240 Ga0157372_10021651
241 Ga0157372_10082456
242 Ga0157375_10029485
243 Ga0163163_10088513
244 Ga0157379_10030158
245 Ga0213876_10005961
246 Ga0207699_10010403
247 Ga0207705_10015392
248 Ga0207707_10001721
249 Ga0207695_10008367
250 Ga0207695_10025323
251 Ga0207695_10034039
252 Ga0207695_10051402
253 Ga0207693_10007169
254 Ga0207693_10009047
255 Ga0207693_10031310
256 Ga0207652_10046121
257 Ga0207694_10031219
258 Ga0207659_10067565
259 Ga0207687_10019631
260 Ga0207700_10000277
261 Ga0207664_10011109
262 Ga0207664_10024796
263 Ga0207686_10010023
264 Ga0207686_10013000
265 Ga0207665_10051826
266 Ga0207691_10017837
267 Ga0207691_10031589
268 Ga0207711_10019706
269 Ga0207661_10005060
270 Ga0207661_10009254
271 Ga0207679_10007100
272 Ga0207667_10029314
273 Ga0207651_10052935
274 Ga0207702_10010258
275 Ga0207675_100008515
276 Ga0268266_10032018
277 Ga0268266_10042725
278 Ga0268265_10014216
279 Ga0307405_10000431
280 Ga0307405_10037761
281 Ga0307413_10002287
282 Ga0307410_10001981
283 Ga0307410_10008812
284 Ga0307416_100000912
285 Ga0307416_100012967
286 Ga0307416_100053721
287 Ga0307414_10018827
288 Ga0307411_10003303
289 Ga0307415_100003546
290 Ga0373926_0006346
291 Ga0373944_0007415
292 Ga0373945_0005516
293 Ga0373943_0001561
294 Ga0373935_0000219
295 Ga0373947_0000570
296 Ga0373925_0000764
297 Ga0395905_0046370
298 Ga0395905_0105596
299 Ga0395901_0003861
300 Ga0436365_1296146
301 Ga0466967_0018847
302 Ga0495603_0000562
303 Ga0495603_0001728
304 Ga0495651_0021767
305 Ga0495653_0013478
306 Ga0495580_0002017
307 Ga0495580_0044378
308 Ga0495582_0001715
309 Ga0495639_0000508
310 Ga0495594_0011204
311 Ga0495608_0007354
312 Ga0495628_0031416
313 Ga0495630_0001130
314 Ga0495665_0000137
315 Ga0495665_0002987
316 Ga0495587_0001128
317 Ga0495587_0024248
318 Ga0495645_0014072
319 Ga0495667_0004710
320 Ga0495667_0007056
321 Ga0495588_0000380
322 Ga0495657_0018037
323 Ga0495623_0017972
324 Ga0495658_0000248
325 Ga0495658_0011955
326 Ga0495581_0000687
327 Ga0495581_0021108
328 Ga0495680_0075282
329 Ga0495675_0019081
330 Ga0495593_0000178
331 Ga0495593_0005387
332 Ga0495614_0000297
333 Ga0495614_0009337
334 Ga0496104_0033180
335 Ga0496108_0011440
336 Ga0496112_0073714
337 Ga0501033_0006081
338 Ga0501034_0035753
339 Ga0501036_0047196
340 Ga0501047_0042259
341 Ga0501070_0021473
342 Ga0501073_0003054
343 Ga0501035_0003344
344 Ga0501035_0083729
345 Ga0501044_0026781
346 nmdc:mga05p37_11311_c2
347 nmdc:mga05p37_11_c1
348 nmdc:mga09592_6134_c1
349 nmdc:mga0qj67_51077_c1
350 nmdc:mga0qj67_5248_c1
351 nmdc:mga0qj67_6030_c1
352 nmdc:mga06r32_78855_c1
353 nmdc:mga08y16_47039_c1
354 nmdc:mga0n895_62647_c1
355 nmdc:mga0rr50_349_c1
356 nmdc:mga08x19_16439_c1

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02687

FtsX

FtsX-like permease family

392

512

0.97

PF02687

FtsX

FtsX-like permease family

797

911

0.93

PF12704

MacB_PCD

MacB-like periplasmic core domain

107

339

0.77

PF12704

MacB_PCD

MacB-like periplasmic core domain

534

762

0.67

Structural Annotation

Top 5 Hits

ID Description Score Start End
7w7c-assembly1.cif.gz_B-2 heme exporter in the unliganded form 0.7338 689 807
5b0b-assembly2.cif.gz_B polyketide cyclase oac from cannabis sativa, i7f mutant 0.682 464 503
3ftj-assembly1.cif.gz_A crystal structure of the periplasmic region of macb from actinobacillus actinomycetemcomitans 0.6667 458 679
5ws4-assembly1.cif.gz_B crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii 0.6434 397 810
3ftj-assembly1.cif.gz_A crystal structure of the periplasmic region of macb from actinobacillus actinomycetemcomitans 0.632 458 679
ID Description Score Start End Superfamily
4mt1A06 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.6514 464 503 3.30.70.1430
af_Q8BG18_205_343_3.30.70.100 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.6363 463 503 3.30.70.100
3kg1A00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.6307 463 503 3.30.70.100
af_Q4DV16_60_487_2.120.10.10 Mainly Beta;6 Propeller;Neuraminidase; 0.6235 99 122 2.120.10.10
3hdsA01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.6178 463 511 3.30.70.100
ID Description Score Start End GO Terms
AF-A0A2N9LYP0-F1-model_v4 Permease 0.9157 2 810 GO:0005886
GO:0022857
AF-A0A2N9LYP0-F1-model_v4 Permease 0.9135 2 810 GO:0005886
GO:0022857
AF-A0A2V8TKY2-F1-model_v4 ABC transporter permease 0.9064 440 810 GO:0005886
GO:0022857
AF-A0A2V8TKY2-F1-model_v4 ABC transporter permease 0.9018 440 810 GO:0005886
GO:0022857
AF-A0A2V8V095-F1-model_v4 Multidrug ABC transporter substrate-binding protein 0.9004 2 643 GO:0005886
GO:0022857

Map