F275598

General Info

Members Datasets Scaffolds Average Seq Length
180 124 131 260

Family's Representative Sequence

Representative Sequence 3300013250|Ga0171462_1001|Ga0171462_100169
Length 279
Sequence MEVMTTRVAIVGGTGKLGGIIRDVVEAEPGFEVAAVLTSRSELSELEGADLVVDASTPAVSIDVVRAAIERGVNVLIGTSGWSAERIALVRPLVEAAGTGAVFIPNFSLGSVLGSALAAAAAPFFPSIEIVEAHRETKIDSPSGTAVRTAELIAAARDAVGPVESPHVDQRARGQQVASVPIHSLRRPGVVARQETILAGAGESLTIVHDTVEPAQAYAGGIRLALAAARDAKGVTVGLDSLIDIGIGRPAAPADVAPVDEGGVPGQVARATESFTDGR

Samples

Sample ID Description Type Environment
1 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
2 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
3 2643221546 Microbacterium sp. Root53 Isolate Unclassified
4 2643221553 Microbacterium sp. Root553 Isolate Unclassified
5 2643221566 Microbacterium sp. Root166 Isolate Unclassified
6 2643221575 Microbacterium sp. Root61 Isolate Unclassified
7 2643221597 Microbacterium sp. Root180 Isolate Unclassified
8 2643221630 Microbacterium sp. Root322 Isolate Unclassified
9 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
10 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
11 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
12 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
13 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
14 2773857759 Microbacterium sp. 1294 Isolate Unclassified
15 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
16 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
17 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
18 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
19 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
20 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
21 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
22 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
23 2852643534 Leifsonia sp. AK011 Isolate Rhizosphere
24 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
25 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
26 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
27 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
28 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
29 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
30 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
31 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
32 2919069694 Microbacterium sp. 1154 Isolate Unclassified
33 2919395869 Microbacterium resistens 2980 Isolate Unclassified
34 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
35 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
36 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
37 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
38 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
39 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
40 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
41 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
42 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
43 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
44 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
45 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
46 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
47 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
48 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
49 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
50 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
51 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
52 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
53 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
54 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
55 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
56 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
57 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
58 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
59 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
60 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
61 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
62 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
63 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
64 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
65 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
66 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
67 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
68 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
69 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
76 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
78 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
79 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
80 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
81 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
82 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
83 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
84 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
85 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
86 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
87 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
88 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
89 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
90 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
91 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
92 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
93 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
94 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
95 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
96 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
97 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
98 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
99 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
100 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
101 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
102 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
103 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
104 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
105 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
106 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
107 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
108 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
109 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
110 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
111 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
112 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
113 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
114 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
115 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
118 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
119 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
120 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
121 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
122 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
123 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
124 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 72.22
Metatranscriptomes 0.56
Isolates 27.22

Biome Distribution

Category Percentage (%)
Aerial Root 1.11
Bulb 0
Endosphere 8.89
Nodule 0
Rhizoplane 13.33
Rhizosphere 31.67
Stem 0
Stem Tuber 0
Unclassified 45

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25154J39366_1003383 3300002738 Bacteria 3377
2 Ga0006562J51391_1040380 3300003578 Bacteria 21298
3 Ga0070658_10001729 3300005327 Bacteria 18416
4 Ga0070659_100550908 3300005366 Bacteria 987
5 Ga0068853_100211057 3300005539 Bacteria 1770
6 Ga0070665_100015278 3300005548 Bacteria 7708
7 Ga0068855_100061247 3300005563 Bacteria 4398
8 Ga0068855_100222087 3300005563 Bacteria 2118
9 Ga0068856_100559257 3300005614 Bacteria 1165
10 Ga0075365_10004727 3300006038 Bacteria 7263
11 Ga0075365_10086365 3300006038 Bacteria 2132
12 Ga0075368_10020519 3300006042 Bacteria 2504
13 Ga0075364_10010042 3300006051 Bacteria 5703
14 Ga0075364_10112142 3300006051 Bacteria 1821
15 Ga0075364_10231035 3300006051 Bacteria 1256
16 Ga0075367_10006521 3300006178 Bacteria 5902
17 Ga0075369_10018473 3300006186 Bacteria 2839
18 Ga0075369_10030090 3300006186 Bacteria 2285
19 Ga0075369_10061128 3300006186 Bacteria 1644
20 Ga0075370_10005815 3300006353 Bacteria 6161
21 Ga0105244_10031403 3300009036 Bacteria 2819
22 Ga0105243_10047211 3300009148 Bacteria 3389
23 Ga0157371_10007333 3300013102 Bacteria 8942
24 Ga0157370_10002575 3300013104 Bacteria 21765
25 Ga0157370_10371751 3300013104 Bacteria 1317
26 Ga0171462_1001 3300013250 Bacteria 1135406
27 Ga0157372_10060523 3300013307 Bacteria 4237
28 Ga0157380_10136056 3300014326 Bacteria 2103
29 Ga0209646_1000098 3300025246 Bacteria 180711
30 Ga0207647_10129043 3300025904 Bacteria 1487
31 Ga0207705_10000001 3300025909 Bacteria 2061880
32 Ga0207657_10059059 3300025919 Bacteria 3298
33 Ga0207690_10609108 3300025932 Bacteria 892
34 Ga0207709_10005412 3300025935 Bacteria 7257
35 Ga0207667_10064222 3300025949 Bacteria 3834
36 Ga0209813_10075876 3300027866 Bacteria 1102
37 Ga0268266_10013978 3300028379 Bacteria 6912
38 Ga0307408_100135160 3300031548 Bacteria 1929
39 Ga0307413_10111282 3300031824 Bacteria 1834
40 Ga0307406_10000358 3300031901 Bacteria 26702
41 Ga0307406_10071459 3300031901 Bacteria 2275
42 Ga0307412_10135487 3300031911 Bacteria 1796
43 Ga0307416_101052463 3300032002 Bacteria 918
44 Ga0307414_10009829 3300032004 Bacteria 5516
45 Ga0395901_0130813 3300038443 Bacteria 2637
46 Ga0451789_0119592 3300041443 Bacteria 1004
47 Ga0451793_0788383 3300041452 Bacteria 2865
48 Ga0466968_0002588 3300044735 Bacteria 6650
49 Ga0495627_003298 3300046453 Bacteria 7216
50 Ga0495620_0116142 3300046515 Bacteria 1058
51 Ga0495654_0059319 3300046530 Bacteria 1843
52 Ga0495672_0054032 3300047320 Bacteria 2350
53 Ga0496100_0118216 3300048903 Bacteria 1851
54 Ga0496101_0113122 3300048904 Bacteria 2045
55 Ga0496102_0411176 3300048905 Bacteria 1271
56 Ga0496103_0192716 3300048906 Bacteria 1310
57 Ga0496104_0208059 3300048907 Bacteria 1868
58 Ga0496104_0236730 3300048907 Bacteria 1737
59 Ga0496104_0521847 3300048907 Bacteria 1099
60 Ga0496105_0025022 3300048908 Bacteria 4853
61 Ga0496105_0113325 3300048908 Bacteria 2238
62 Ga0496105_0133447 3300048908 Bacteria 2046
63 Ga0496107_0192029 3300048910 Bacteria 1517
64 Ga0496108_0331486 3300048911 Bacteria 1327
65 Ga0496109_0087113 3300048912 Bacteria 2884
66 Ga0496111_0065758 3300048914 Bacteria 2632
67 Ga0496112_0090815 3300048915 Bacteria 3023
68 Ga0496113_0111536 3300048916 Bacteria 2130
69 Ga0496113_0132526 3300048916 Bacteria 1956
70 Ga0496114_0277726 3300048917 Bacteria 1476
71 Ga0496115_0029158 3300048918 Bacteria 4332
72 Ga0496115_0169183 3300048918 Bacteria 1807
73 Ga0496115_0351262 3300048918 Bacteria 1202
74 Ga0496115_0362347 3300048918 Bacteria 1181
75 Ga0496116_0012738 3300048919 Bacteria 6840
76 Ga0496117_0000028 3300048920 Bacteria 407392
77 Ga0496117_0000733 3300048920 Bacteria 51523
78 Ga0496117_0006301 3300048920 Bacteria 12070
79 Ga0496117_0035602 3300048920 Bacteria 3735
80 Ga0496117_0155784 3300048920 Bacteria 1345
81 Ga0496118_0008518 3300048921 Bacteria 10587
82 Ga0496118_0037011 3300048921 Bacteria 3935
83 Ga0496118_0043745 3300048921 Bacteria 3515
84 Ga0496118_0124410 3300048921 Bacteria 1673
85 Ga0496119_0001633 3300048922 Bacteria 26476
86 Ga0496119_0002836 3300048922 Bacteria 18531
87 Ga0496119_0005516 3300048922 Bacteria 12075
88 Ga0496119_0005530 3300048922 Bacteria 12047
89 Ga0496119_0071263 3300048922 Bacteria 2035
90 Ga0496120_0000553 3300048923 Bacteria 56978
91 Ga0496120_0000809 3300048923 Bacteria 44906
92 Ga0496120_0004127 3300048923 Bacteria 12517
93 Ga0496122_0000055 3300048925 Bacteria 258485
94 Ga0496122_0003194 3300048925 Bacteria 21857
95 Ga0496122_0005181 3300048925 Bacteria 15679
96 Ga0496122_0007675 3300048925 Bacteria 11893
97 Ga0496122_0018870 3300048925 Bacteria 6339
98 Ga0496122_0029511 3300048925 Bacteria 4624
99 Ga0496122_0049720 3300048925 Bacteria 3206
100 Ga0496123_0000003 3300048926 Bacteria 866556
101 Ga0496123_0000213 3300048926 Bacteria 118378
102 Ga0496123_0001428 3300048926 Bacteria 33368
103 Ga0496123_0001962 3300048926 Bacteria 26720
104 Ga0496124_0001974 3300048927 Bacteria 28000
105 Ga0496124_0004153 3300048927 Bacteria 17098
106 Ga0496124_0004728 3300048927 Bacteria 15722
107 Ga0496124_0064505 3300048927 Bacteria 3057
108 Ga0496124_0295200 3300048927 Bacteria 1174
109 Ga0496125_0001022 3300048928 Bacteria 43463
110 Ga0496125_0002853 3300048928 Bacteria 21750
111 Ga0496125_0006412 3300048928 Bacteria 12721
112 Ga0496125_0023916 3300048928 Bacteria 5629
113 Ga0496125_0031218 3300048928 Bacteria 4751
114 Ga0496125_0035063 3300048928 Bacteria 4410
115 Ga0496125_0048815 3300048928 Bacteria 3525
116 Ga0496126_0005541 3300048929 Bacteria 14367
117 Ga0496126_0010011 3300048929 Bacteria 10004
118 Ga0496126_0012883 3300048929 Bacteria 8541
119 Ga0496126_0038174 3300048929 Bacteria 4471
120 Ga0496126_0062229 3300048929 Bacteria 3350
121 Ga0496126_0071670 3300048929 Bacteria 3084
122 Ga0496126_0153183 3300048929 Bacteria 1974
123 Ga0496126_0174912 3300048929 Bacteria 1827
124 Ga0501034_0004080 3300049571 Bacteria 16394
125 Ga0501034_0031014 3300049571 Bacteria 5433
126 Ga0501038_0033158 3300049574 Bacteria 4549
127 Ga0501070_0000484 3300049586 Bacteria 36176
128 nmdc:mga00v17_120885_c1 3300050491 Bacteria 1667
129 nmdc:mga0yw44_13787_c1 3300050492 Bacteria 4270
130 nmdc:mga06z11_32944_c1 3300050494 Bacteria 2531
131 nmdc:mga07m45_34674_c1 3300050496 Bacteria 2805

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005327 Ga0070658_10001729 Ga0070658_1000172911 228
2 3300005563 Ga0068855_100061247 Ga0068855_1000612473 228
3 3300013104 Ga0157370_10002575 Ga0157370_100025758 228
4 3300025909 Ga0207705_10000001 Ga0207705_100000011999 228
5 3300047320 Ga0495672_0054032 Ga0495672_0054032_193_927 229
6 3300048914 Ga0496111_0065758 Ga0496111_0065758_1901_2605 230
7 3300041443 Ga0451789_0119592 Ga0451789_0119592_171_953 232
8 3300048925 Ga0496122_0007675 Ga0496122_0007675_6401_7117 232
9 3300048926 Ga0496123_0001428 Ga0496123_0001428_8444_9160 232
10 3300049571 Ga0501034_0031014 Ga0501034_0031014_4626_5372 235
11 3300049574 Ga0501038_0033158 Ga0501038_0033158_3097_3843 235
12 iso_pu_bacteria 2852677369 2852679117 238
13 iso_pu_bacteria 2643221546 2643754183 240
14 3300048907 Ga0496104_0521847 Ga0496104_0521847_268_1038 241
15 3300048908 Ga0496105_0113325 Ga0496105_0113325_188_958 241
16 3300048908 Ga0496105_0133447 Ga0496105_0133447_262_1032 241
17 3300048917 Ga0496114_0277726 Ga0496114_0277726_442_1212 241
18 3300048918 Ga0496115_0029158 Ga0496115_0029158_227_997 241
19 3300048918 Ga0496115_0169183 Ga0496115_0169183_330_1100 241
20 3300048929 Ga0496126_0174912 Ga0496126_0174912_49_819 241
21 iso_pu_bacteria 2852643534 2852645194 241
22 iso_pu_bacteria 2862993130 2862993313 241
23 iso_pu_bacteria 2964326757 2964327104 241
24 iso_pu_bacteria 2585428157 2588106596 242
25 iso_pu_bacteria 2643221542 2643733999 242
26 iso_pu_bacteria 2643221553 2643785433 242
27 iso_pu_bacteria 2643221566 2643849550 242
28 iso_pu_bacteria 2643221575 2643888696 242
29 iso_pu_bacteria 2643221597 2643996224 242
30 iso_pu_bacteria 2643221630 2644170577 242
31 iso_pu_bacteria 2643221724 2644679788 242
32 iso_pu_bacteria 2728369380 2730229314 242
33 iso_pu_bacteria 2747842429 2747952669 242
34 iso_pu_bacteria 2757320536 2758224251 242
35 iso_pu_bacteria 2773857758 2774381473 242
36 iso_pu_bacteria 2773857759 2774383367 242
37 iso_pu_bacteria 2773857763 2774400012 242
38 iso_pu_bacteria 2808606306 2808631591 242
39 iso_pu_bacteria 2808606447 2809227003 242
40 iso_pu_bacteria 2811994872 2812322616 242
41 iso_pu_bacteria 2821268502 2821269540 242
42 iso_pu_bacteria 2833709550 2833710453 242
43 iso_pu_bacteria 2852632344 2852633612 242
44 iso_pu_bacteria 2852646457 2852647026 242
45 iso_pu_bacteria 2852663356 2852664892 242
46 iso_pu_bacteria 2857723135 2857723478 242
47 iso_pu_bacteria 2870628048 2870629882 242
48 iso_pu_bacteria 2904509784 2904509841 242
49 iso_pu_bacteria 2908678064 2908678943 242
50 iso_pu_bacteria 2919069694 2919071291 242
51 iso_pu_bacteria 2919395869 2919399160 242
52 iso_pu_bacteria 2945968032 2945971478 242
53 iso_pu_bacteria 2946033335 2946034117 242
54 iso_pu_bacteria 2946041624 2946043832 242
55 iso_pu_bacteria 2946080515 2946081275 242
56 iso_pu_bacteria 2974294766 2974297864 242
57 iso_pu_bacteria 2974324384 2974325899 242
58 iso_pu_bacteria 2977228692 2977230847 242
59 iso_pu_bacteria 2977236895 2977239644 242
60 iso_pu_bacteria 2977251589 2977253551 242
61 iso_pu_bacteria 2977264416 2977266074 242
62 iso_pu_bacteria 2984542743 2984546084 242
63 iso_pu_bacteria 2984580707 2984580716 242
64 iso_pu_bacteria 8004182704 8004185466 242
65 iso_pu_bacteria 8016254467 8016254532 242
66 iso_pu_bacteria 8045830549 8045832512 242
67 iso_pu_bacteria 2808606368 2808885225 243
68 3300005614 Ga0068856_100559257 Ga0068856_1005592571 245
69 3300006186 Ga0075369_10061128 Ga0075369_100611282 245
70 3300013102 Ga0157371_10007333 Ga0157371_100073336 245
71 3300025919 Ga0207657_10059059 Ga0207657_100590592 245
72 3300025949 Ga0207667_10064222 Ga0207667_100642222 245
73 3300041452 Ga0451793_0788383 Ga0451793_0788383_572_1318 245
74 3300002738 JGI25154J39366_1003383 JGI25154J39366_10033835 246
75 3300003578 Ga0006562J51391_1040380 Ga0006562J51391_10403806 246
76 3300005366 Ga0070659_100550908 Ga0070659_1005509082 246
77 3300005539 Ga0068853_100211057 Ga0068853_1002110572 246
78 3300005548 Ga0070665_100015278 Ga0070665_1000152785 246
79 3300005563 Ga0068855_100222087 Ga0068855_1002220873 246
80 3300006038 Ga0075365_10004727 Ga0075365_100047275 246
81 3300006038 Ga0075365_10086365 Ga0075365_100863653 246
82 3300006042 Ga0075368_10020519 Ga0075368_100205193 246
83 3300006051 Ga0075364_10010042 Ga0075364_100100425 246
84 3300006051 Ga0075364_10112142 Ga0075364_101121422 246
85 3300006051 Ga0075364_10231035 Ga0075364_102310352 246
86 3300006178 Ga0075367_10006521 Ga0075367_100065215 246
87 3300006186 Ga0075369_10018473 Ga0075369_100184733 246
88 3300006186 Ga0075369_10030090 Ga0075369_100300903 246
89 3300006353 Ga0075370_10005815 Ga0075370_100058154 246
90 3300009036 Ga0105244_10031403 Ga0105244_100314034 246
91 3300009148 Ga0105243_10047211 Ga0105243_100472114 246
92 3300013104 Ga0157370_10371751 Ga0157370_103717512 246
93 3300013250 Ga0171462_1001 Ga0171462_100169 246
94 3300013307 Ga0157372_10060523 Ga0157372_100605232 246
95 3300014326 Ga0157380_10136056 Ga0157380_101360562 246
96 3300025246 Ga0209646_1000098 Ga0209646_100009867 246
97 3300025904 Ga0207647_10129043 Ga0207647_101290432 246
98 3300025932 Ga0207690_10609108 Ga0207690_106091081 246
99 3300025935 Ga0207709_10005412 Ga0207709_100054124 246
100 3300027866 Ga0209813_10075876 Ga0209813_100758761 246
101 3300028379 Ga0268266_10013978 Ga0268266_100139785 246
102 3300031548 Ga0307408_100135160 Ga0307408_1001351603 246
103 3300031824 Ga0307413_10111282 Ga0307413_101112823 246
104 3300031901 Ga0307406_10000358 Ga0307406_1000035825 246
105 3300031901 Ga0307406_10071459 Ga0307406_100714594 246
106 3300031911 Ga0307412_10135487 Ga0307412_101354872 246
107 3300032002 Ga0307416_101052463 Ga0307416_1010524631 246
108 3300032004 Ga0307414_10009829 Ga0307414_100098299 246
109 3300038443 Ga0395901_0130813 Ga0395901_0130813_718_1479 246
110 3300044735 Ga0466968_0002588 Ga0466968_0002588_2037_2858 246
111 3300046453 Ga0495627_003298 Ga0495627_003298_3563_4303 246
112 3300046515 Ga0495620_0116142 Ga0495620_0116142_192_1004 246
113 3300046530 Ga0495654_0059319 Ga0495654_0059319_540_1352 246
114 3300048903 Ga0496100_0118216 Ga0496100_0118216_586_1338 246
115 3300048904 Ga0496101_0113122 Ga0496101_0113122_1041_1793 246
116 3300048905 Ga0496102_0411176 Ga0496102_0411176_136_888 246
117 3300048906 Ga0496103_0192716 Ga0496103_0192716_10_762 246
118 3300048907 Ga0496104_0208059 Ga0496104_0208059_378_1199 246
119 3300048907 Ga0496104_0236730 Ga0496104_0236730_170_922 246
120 3300048908 Ga0496105_0025022 Ga0496105_0025022_514_1266 246
121 3300048910 Ga0496107_0192029 Ga0496107_0192029_237_989 246
122 3300048911 Ga0496108_0331486 Ga0496108_0331486_246_1067 246
123 3300048912 Ga0496109_0087113 Ga0496109_0087113_76_897 246
124 3300048915 Ga0496112_0090815 Ga0496112_0090815_668_1420 246
125 3300048916 Ga0496113_0111536 Ga0496113_0111536_459_1280 246
126 3300048916 Ga0496113_0132526 Ga0496113_0132526_89_901 246
127 3300048918 Ga0496115_0351262 Ga0496115_0351262_313_1065 246
128 3300048918 Ga0496115_0362347 Ga0496115_0362347_249_1070 246
129 3300048919 Ga0496116_0012738 Ga0496116_0012738_3221_4033 246
130 3300048920 Ga0496117_0000028 Ga0496117_0000028_353794_354606 246
131 3300048920 Ga0496117_0000733 Ga0496117_0000733_38559_39371 246
132 3300048920 Ga0496117_0006301 Ga0496117_0006301_2949_3689 246
133 3300048920 Ga0496117_0035602 Ga0496117_0035602_1244_2074 246
134 3300048920 Ga0496117_0155784 Ga0496117_0155784_397_1209 246
135 3300048921 Ga0496118_0008518 Ga0496118_0008518_4067_4879 246
136 3300048921 Ga0496118_0037011 Ga0496118_0037011_431_1171 246
137 3300048921 Ga0496118_0043745 Ga0496118_0043745_1530_2342 246
138 3300048921 Ga0496118_0124410 Ga0496118_0124410_159_989 246
139 3300048922 Ga0496119_0001633 Ga0496119_0001633_4031_4861 246
140 3300048922 Ga0496119_0002836 Ga0496119_0002836_7901_8713 246
141 3300048922 Ga0496119_0005516 Ga0496119_0005516_8477_9289 246
142 3300048922 Ga0496119_0005530 Ga0496119_0005530_4920_5732 246
143 3300048922 Ga0496119_0071263 Ga0496119_0071263_975_1787 246
144 3300048923 Ga0496120_0000553 Ga0496120_0000553_47928_48740 246
145 3300048923 Ga0496120_0000809 Ga0496120_0000809_12125_12937 246
146 3300048923 Ga0496120_0004127 Ga0496120_0004127_8523_9335 246
147 3300048925 Ga0496122_0000055 Ga0496122_0000055_171168_171980 246
148 3300048925 Ga0496122_0003194 Ga0496122_0003194_10913_11725 246
149 3300048925 Ga0496122_0005181 Ga0496122_0005181_10813_11553 246
150 3300048925 Ga0496122_0018870 Ga0496122_0018870_41_871 246
151 3300048925 Ga0496122_0029511 Ga0496122_0029511_2749_3561 246
152 3300048925 Ga0496122_0049720 Ga0496122_0049720_336_1076 246
153 3300048926 Ga0496123_0000003 Ga0496123_0000003_787993_788805 246
154 3300048926 Ga0496123_0000213 Ga0496123_0000213_10967_11779 246
155 3300048926 Ga0496123_0001962 Ga0496123_0001962_18795_19607 246
156 3300048927 Ga0496124_0001974 Ga0496124_0001974_6036_6848 246
157 3300048927 Ga0496124_0004153 Ga0496124_0004153_13752_14564 246
158 3300048927 Ga0496124_0004728 Ga0496124_0004728_4581_5393 246
159 3300048927 Ga0496124_0064505 Ga0496124_0064505_332_1072 246
160 3300048927 Ga0496124_0295200 Ga0496124_0295200_173_985 246
161 3300048928 Ga0496125_0001022 Ga0496125_0001022_16410_17225 246
162 3300048928 Ga0496125_0002853 Ga0496125_0002853_20235_21047 246
163 3300048928 Ga0496125_0006412 Ga0496125_0006412_2514_3326 246
164 3300048928 Ga0496125_0023916 Ga0496125_0023916_2728_3468 246
165 3300048928 Ga0496125_0031218 Ga0496125_0031218_2763_3575 246
166 3300048928 Ga0496125_0035063 Ga0496125_0035063_2766_3506 246
167 3300048928 Ga0496125_0048815 Ga0496125_0048815_1558_2298 246
168 3300048929 Ga0496126_0005541 Ga0496126_0005541_9912_10724 246
169 3300048929 Ga0496126_0010011 Ga0496126_0010011_2618_3358 246
170 3300048929 Ga0496126_0012883 Ga0496126_0012883_2063_2875 246
171 3300048929 Ga0496126_0038174 Ga0496126_0038174_2955_3695 246
172 3300048929 Ga0496126_0062229 Ga0496126_0062229_2446_3186 246
173 3300048929 Ga0496126_0071670 Ga0496126_0071670_498_1238 246
174 3300048929 Ga0496126_0153183 Ga0496126_0153183_526_1338 246
175 3300049571 Ga0501034_0004080 Ga0501034_0004080_12864_13604 246
176 3300049586 Ga0501070_0000484 Ga0501070_0000484_23455_24294 246
177 3300050491 nmdc:mga00v17_120885_c1 nmdc:mga00v17_120885_c1_241_1053 246
178 3300050492 nmdc:mga0yw44_13787_c1 nmdc:mga0yw44_13787_c1_340_1152 246
179 3300050494 nmdc:mga06z11_32944_c1 nmdc:mga06z11_32944_c1_1207_2019 246
180 3300050496 nmdc:mga07m45_34674_c1 nmdc:mga07m45_34674_c1_590_1402 246

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01113

DapB_N

Dihydrodipicolinate reductase, N-terminus

6

107

0.93

PF05173

DapB_C

Dihydrodipicolinate reductase, C-terminus

110

243

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
1c3v-assembly1.cif.gz_A dihydrodipicolinate reductase from mycobacterium tuberculosis complexed with nadph and pdc 0.8939 4 242
1c3v-assembly1.cif.gz_A dihydrodipicolinate reductase from mycobacterium tuberculosis complexed with nadph and pdc 0.8702 4 242
5wol-assembly1.cif.gz_A crystal structure of dihydrodipicolinate reductase dapb from coxiella burnetii 0.8585 2 240
5wol-assembly1.cif.gz_A crystal structure of dihydrodipicolinate reductase dapb from coxiella burnetii 0.8551 2 240
1yl5-assembly1.cif.gz_A crystal structure of mycobacterium tuberculosis dihydrodipicolinate reductase (rv2773c) (crystal form a) 0.8286 1 242
ID Description Score Start End Superfamily
af_P9WP23_2_120_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9449 5 115 3.50.50.60
af_P9WP23_2_88_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9377 5 87 3.40.50.720
1c3vA02 Alpha Beta;2-Layer Sandwich;Dihydrodipicolinate Reductase; domain 2;Dihydrodipicolinate Reductase; domain 2 0.9072 106 209 3.30.360.10
4dpkC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8982 1 76 3.40.50.720
af_P9WP23_2_88_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8873 5 87 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A011U0U5-F1-model_v4 Dihydrodipicolinate reductase N-terminal domain-containing protein 0.9928 1 98 GO:0008839
GO:0009089
AF-A0A011U0U5-F1-model_v4 Dihydrodipicolinate reductase N-terminal domain-containing protein 0.9731 1 98 GO:0008839
GO:0009089
AF-A0A3B9JZE0-F1-model_v4 4-hydroxy-tetrahydrodipicolinate reductase 0.9427 2 121 GO:0005829
GO:0008839
GO:0009089
GO:0019877
AF-A0A1Q3L9V0-F1-model_v4 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) 0.9377 1 246 GO:0005829
GO:0008839
GO:0009089
GO:0019877
AF-A0A1Q3L9V0-F1-model_v4 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) 0.934 1 246 GO:0005829
GO:0008839
GO:0009089
GO:0019877

Feature Viewer

pLDDT pTM Quality
91.05 0.87 High
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Predicted Structure (AlphaFold2)

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