F275533

General Info

Members Datasets Scaffolds Average Seq Length
180 148 360 267

Family's Representative Sequence

Representative Sequence 3300009177|Ga0105248_10159142|Ga0105248_101591422
Length 307
Sequence LVGTISETNAAIDSLAFLREEIPMSSASRGSGGPGWTPARRLAGKVAVVIGAGQTPGQGLGNGRATTIRFAREGARVLAVDRRLESAHETAELIKKEGFECEAFAADVTRESDLEAAMQAARRRWGSLDVLYNNVGVSLEGGDADLQEITEEAFDNIYRINLRGTAFACKQAVRIMREQRSGSIVNMASAAAVQNNPTVAYRTTKAAVITLTQQLAIQNAPYGIRANCLMPGLIDTPMAVEKRATKAGMSRDQVLAQRDSKVPLRGKQGTAWDVANAALFLASDEANFITGIGMLIDGGRVLDAGRF

Samples

Sample ID Description Type Environment
1 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
2 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
3 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
4 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
5 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
6 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
7 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
10 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
11 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
12 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
13 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
14 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
15 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
16 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
17 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
18 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
19 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
22 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
25 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
26 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
27 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
28 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
29 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
30 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
31 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
33 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
34 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
35 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
36 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
37 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
38 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
39 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
40 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
41 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
43 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
47 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
48 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
49 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
51 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
73 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
74 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
75 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
76 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
77 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
78 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
79 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
80 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
81 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
82 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
83 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
84 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
85 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
86 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
87 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
88 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
89 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
90 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
91 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
92 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
93 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
94 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
95 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
96 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
97 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
98 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
99 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
100 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
101 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
102 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
103 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
104 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
105 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
106 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
107 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
108 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
109 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
110 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
111 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
112 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
113 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
114 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
115 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
116 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
121 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
122 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
123 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
124 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
127 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
128 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
129 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
130 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
131 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
132 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
133 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
134 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
135 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
136 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
137 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
138 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
139 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
140 3300053729 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 endosphere Metagenome Endosphere
141 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
142 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
143 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
144 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
145 2738541307 Variovorax sp. GV008 Isolate Unclassified
146 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
147 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
148 2945984333 Variovorax sp. W2I14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.22
Metatranscriptomes 0.56
Isolates 2.22

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10
Nodule 0
Rhizoplane 6.67
Rhizosphere 75.56
Stem 0
Stem Tuber 0
Unclassified 3.89

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105248_10159142 3300009177 Bacteria 2548
2 JGI25165J46597_1007025 3300003214 Bacteria 1920
3 Ga0055536_1022761 3300003781 Bacteria 1859
4 Ga0055528_1029792 3300003790 Bacteria 1465
5 Ga0055540_1010811 3300003792 Bacteria 3009
6 Ga0065704_10145228 3300005289 Bacteria 1478
7 Ga0070690_100010245 3300005330 Bacteria 5449
8 Ga0070670_100068654 3300005331 Plasmid 3042
9 Ga0068868_100022688 3300005338 Plasmid 4741
10 Ga0070661_100352086 3300005344 Unclassified 1155
11 Ga0070671_100094318 3300005355 Plasmid 2508
12 Ga0070673_100205368 3300005364 Bacteria 1698
13 Ga0070709_10030166 3300005434 Bacteria 3251
14 Ga0070713_100153360 3300005436 Bacteria 2051
15 Ga0070710_10161770 3300005437 Bacteria 1389
16 Ga0070711_100037360 3300005439 Bacteria 3259
17 Ga0070662_100610451 3300005457 Bacteria 918
18 Ga0070681_10041533 3300005458 Bacteria 4609
19 Ga0070697_100020708 3300005536 Bacteria 5206
20 Ga0068853_100242236 3300005539 Unclassified 1653
21 Ga0070672_100056371 3300005543 Bacteria 3081
22 Ga0070704_100052296 3300005549 Bacteria 2881
23 Ga0068855_100644857 3300005563 Bacteria 1138
24 Ga0068854_100003789 3300005578 Bacteria 9454
25 Ga0068854_100220094 3300005578 Bacteria 1502
26 Ga0068852_100125893 3300005616 Bacteria 2353
27 Ga0068864_100235423 3300005618 Bacteria 1695
28 Ga0068858_100108382 3300005842 Bacteria 2593
29 Ga0081540_1143505 3300005983 Bacteria 954
30 Ga0075432_10065025 3300006058 Bacteria 1303
31 Ga0070712_100001303 3300006175 Bacteria 15090
32 Ga0097621_100185249 3300006237 Bacteria 1800
33 Ga0068871_100030406 3300006358 Unclassified 4252
34 Ga0075428_100008355 3300006844 Bacteria 11479
35 Ga0075430_100013967 3300006846 Bacteria 6844
36 Ga0075430_100351740 3300006846 Bacteria 1217
37 Ga0075431_100002242 3300006847 Bacteria 18532
38 Ga0075433_10003313 3300006852 Bacteria 12441
39 Ga0075434_100001086 3300006871 Bacteria 22255
40 Ga0075429_100002434 3300006880 Bacteria 15682
41 Ga0075429_100015415 3300006880 Bacteria 6623
42 Ga0075436_100000331 3300006914 Bacteria 30168
43 Ga0075435_100001505 3300007076 Bacteria 14975
44 Ga0111539_10000200 3300009094 Bacteria 70531
45 Ga0111539_10010804 3300009094 Bacteria 11495
46 Ga0105245_10202916 3300009098 Bacteria 1905
47 Ga0105245_10707853 3300009098 Bacteria 1041
48 Ga0114129_10000205 3300009147 Bacteria 65770
49 Ga0114129_10193457 3300009147 Bacteria 2760
50 Ga0114129_10199313 3300009147 Bacteria 2712
51 Ga0114129_10815657 3300009147 Bacteria 1189
52 Ga0157371_10004901 3300013102 Bacteria 11498
53 Ga0157369_10237192 3300013105 Bacteria 1905
54 Ga0163162_10011627 3300013306 Bacteria 8584
55 Ga0163162_10345872 3300013306 Bacteria 1620
56 Ga0157375_10046388 3300013308 Bacteria 4236
57 Ga0157376_10039713 3300014969 Unclassified 3840
58 Ga0157376_10342657 3300014969 Bacteria 1428
59 Ga0209677_100394 3300025253 Bacteria 26479
60 Ga0209233_1000570 3300025261 Bacteria 19755
61 Ga0209455_1005822 3300025272 Bacteria 3736
62 Ga0209673_1015556 3300025273 Bacteria 2883
63 Ga0209676_1004764 3300025292 Bacteria 7393
64 Ga0209051_1015611 3300025303 Bacteria 3483
65 Ga0207643_10109386 3300025908 Bacteria 1627
66 Ga0207684_10112162 3300025910 Bacteria 2334
67 Ga0207707_10348352 3300025912 Bacteria 1276
68 Ga0207693_10003016 3300025915 Bacteria 14558
69 Ga0207663_10032562 3300025916 Bacteria 3096
70 Ga0207650_10217701 3300025925 Bacteria 1536
71 Ga0207687_10507326 3300025927 Bacteria 1007
72 Ga0207644_10094739 3300025931 Unclassified 2231
73 Ga0207670_10009594 3300025936 Bacteria 5531
74 Ga0207691_10006957 3300025940 Bacteria 10911
75 Ga0207640_10024844 3300025981 Bacteria 3620
76 Ga0207640_10373465 3300025981 Bacteria 1153
77 Ga0207658_10044063 3300025986 Bacteria 3248
78 Ga0207703_10138370 3300026035 Bacteria 2111
79 Ga0207708_10431871 3300026075 Bacteria 1094
80 Ga0207648_10005390 3300026089 Bacteria 12897
81 Ga0207674_10167882 3300026116 Bacteria 2148
82 Ga0207683_10022074 3300026121 Bacteria 5462
83 Ga0207428_10008758 3300027907 Bacteria 9127
84 Ga0307515_10157589 3300028794 Bacteria 2334
85 Ga0265760_10003102 3300031090 Unclassified 4849
86 Ga0265327_10045025 3300031251 Bacteria 2348
87 Ga0307408_100083842 3300031548 Bacteria 2389
88 Ga0307408_100773398 3300031548 Bacteria 869
89 Ga0265314_10021699 3300031711 Bacteria 4931
90 Ga0265342_10007221 3300031712 Bacteria 8167
91 Ga0316576_10068297 3300031727 Bacteria 2618
92 Ga0316578_10267270 3300031728 Bacteria 1025
93 Ga0307516_10003295 3300031730 Bacteria 20897
94 Ga0307516_10081296 3300031730 Eukaryota 3083
95 Ga0307405_10463219 3300031731 Bacteria 1008
96 Ga0307407_10056147 3300031903 Bacteria 2278
97 Ga0307412_10011570 3300031911 Bacteria 5116
98 Ga0307412_10272631 3300031911 Bacteria 1325
99 Ga0307409_100044767 3300031995 Bacteria 3336
100 Ga0307416_100282700 3300032002 Bacteria 1637
101 Ga0307414_10311777 3300032004 Bacteria 1336
102 Ga0307411_10206983 3300032005 Bacteria 1512
103 Ga0307415_100049716 3300032126 Bacteria 2837
104 Ga0373936_0211892 3300035113 Unclassified 857
105 Ga0373937_0099143 3300036401 Bacteria 2703
106 Ga0316582_0017440 3300036647 Bacteria 4155
107 Ga0436361_0552353 3300039447 Bacteria 1320
108 Ga0436362_0546678 3300039453 Bacteria 1706
109 Ga0495641_0099725 3300046461 Bacteria 1296
110 Ga0495637_0001026 3300046520 Bacteria 17537
111 Ga0495652_0015502 3300046529 Eukaryota 6824
112 Ga0495658_0129023 3300046683 Bacteria 1537
113 Ga0495660_0125716 3300046810 Bacteria 1292
114 Ga0495593_0109567 3300047673 Bacteria 1411
115 Ga0496100_0027508 3300048903 Bacteria 3498
116 Ga0496100_0155735 3300048903 Bacteria 1634
117 Ga0496101_0117745 3300048904 Bacteria 2006
118 Ga0496101_0414702 3300048904 Bacteria 1061
119 Ga0496104_0103452 3300048907 Bacteria 2728
120 Ga0496106_0326844 3300048909 Bacteria 1231
121 Ga0496108_0095756 3300048911 Bacteria 2528
122 Ga0496108_0371093 3300048911 Bacteria 1249
123 Ga0496110_0001970 3300048913 Bacteria 15257
124 Ga0496111_0053624 3300048914 Bacteria 2914
125 Ga0496111_0075300 3300048914 Bacteria 2459
126 Ga0496114_0653092 3300048917 Bacteria 925
127 Ga0496117_0043698 3300048920 Bacteria 3255
128 Ga0496118_0008560 3300048921 Bacteria 10545
129 Ga0496121_0053575 3300048924 Bacteria 3378
130 Ga0496123_0008443 3300048926 Bacteria 9460
131 Ga0496124_0213953 3300048927 Bacteria 1456
132 Ga0496124_0237445 3300048927 Bacteria 1358
133 Ga0496125_0021154 3300048928 Bacteria 6078
134 Ga0496125_0080922 3300048928 Bacteria 2484
135 Ga0496126_0093090 3300048929 Bacteria 2647
136 Ga0501036_0345832 3300049572 Bacteria 1242
137 Ga0501038_0220408 3300049574 Bacteria 1514
138 Ga0501039_0519319 3300049575 Bacteria 935
139 Ga0501047_0008581 3300049581 Bacteria 9645
140 Ga0501070_0060548 3300049586 Bacteria 3138
141 Ga0501070_0492658 3300049586 Bacteria 985
142 Ga0501072_0114244 3300049588 Bacteria 2149
143 Ga0501072_0691711 3300049588 Bacteria 802
144 Ga0501073_0097268 3300049589 Bacteria 2045
145 Ga0501081_0356406 3300049743 Bacteria 1079
146 Ga0501035_0148031 3300049822 Bacteria 2039
147 Ga0501044_0130885 3300049823 Bacteria 2503
148 Ga0501045_0095852 3300049824 Bacteria 2195
149 nmdc:mga05p37_7561_c1 3300050507 Bacteria 12816
150 nmdc:mga09592_1356_c1 3300050508 Bacteria 19564
151 nmdc:mga09592_4163_c1 3300050508 Bacteria 11681
152 nmdc:mga0qj67_393650_c1 3300050509 Bacteria 1118
153 nmdc:mga0qj67_8907_c1 3300050509 Bacteria 7446
154 nmdc:mga06r32_15696_c1 3300050510 Bacteria 6882
155 nmdc:mga06r32_347_c1 3300050510 Bacteria 38541
156 nmdc:mga08y16_328_c1 3300050511 Bacteria 33166
157 nmdc:mga0n895_2878_c1 3300050512 Bacteria 13655
158 nmdc:mga0rr50_31418_c1 3300050513 Bacteria 3770
159 nmdc:mga0rr50_3552_c1 3300050513 Bacteria 9004
160 nmdc:mga08x19_379796_c1 3300050514 Bacteria 989
161 nmdc:mga08x19_52376_c1 3300050514 Bacteria 2625
162 nmdc:mga0a205_599_c1 3300050515 Bacteria 28654
163 Ga0500610_0000112 3300053079 Bacteria 24798
164 Ga0500578_0010253 3300053086 Bacteria 6074
165 Ga0500607_000040 3300053121 Bacteria 85325
166 Ga0500607_000787 3300053121 Eukaryota 30596
167 Ga0500636_0001745 3300053177 Bacteria 11921
168 Ga0500636_0006415 3300053177 Bacteria 6752
169 Ga0500625_086805 3300053729 Bacteria 1351
170 Ga0500645_001379 3300053730 Bacteria 12409
171 Ga0501084_0610173 3300054114 Bacteria 922
172 Ga0501082_0094387 3300060353 Bacteria 2585
173 Ga0501082_0406170 3300060353 Bacteria 1189
174 Ga0501082_0438870 3300060353 Bacteria 1140
175 Ga0501082_0657096 3300060353 Bacteria 917
176 Ga0530510_0414549 3300061734 Bacteria 1016
177 2738881196 2738541307 Bacteria 8606193
178 2863073673 2863067949 Bacteria 8541735
179 2895882302 2895880812 Bacteria 11255272
180 2945984982 2945984333 Bacteria 7358892
181 Ga0105248_10159142
182 JGI25165J46597_1007025
183 Ga0055536_1022761
184 Ga0055528_1029792
185 Ga0055540_1010811
186 Ga0065704_10145228
187 Ga0070690_100010245
188 Ga0070670_100068654
189 Ga0068868_100022688
190 Ga0070661_100352086
191 Ga0070671_100094318
192 Ga0070673_100205368
193 Ga0070709_10030166
194 Ga0070713_100153360
195 Ga0070710_10161770
196 Ga0070711_100037360
197 Ga0070662_100610451
198 Ga0070681_10041533
199 Ga0070697_100020708
200 Ga0068853_100242236
201 Ga0070672_100056371
202 Ga0070704_100052296
203 Ga0068855_100644857
204 Ga0068854_100003789
205 Ga0068854_100220094
206 Ga0068852_100125893
207 Ga0068864_100235423
208 Ga0068858_100108382
209 Ga0081540_1143505
210 Ga0075432_10065025
211 Ga0070712_100001303
212 Ga0097621_100185249
213 Ga0068871_100030406
214 Ga0075428_100008355
215 Ga0075430_100013967
216 Ga0075430_100351740
217 Ga0075431_100002242
218 Ga0075433_10003313
219 Ga0075434_100001086
220 Ga0075429_100002434
221 Ga0075429_100015415
222 Ga0075436_100000331
223 Ga0075435_100001505
224 Ga0111539_10000200
225 Ga0111539_10010804
226 Ga0105245_10202916
227 Ga0105245_10707853
228 Ga0114129_10000205
229 Ga0114129_10193457
230 Ga0114129_10199313
231 Ga0114129_10815657
232 Ga0157371_10004901
233 Ga0157369_10237192
234 Ga0163162_10011627
235 Ga0163162_10345872
236 Ga0157375_10046388
237 Ga0157376_10039713
238 Ga0157376_10342657
239 Ga0209677_100394
240 Ga0209233_1000570
241 Ga0209455_1005822
242 Ga0209673_1015556
243 Ga0209676_1004764
244 Ga0209051_1015611
245 Ga0207643_10109386
246 Ga0207684_10112162
247 Ga0207707_10348352
248 Ga0207693_10003016
249 Ga0207663_10032562
250 Ga0207650_10217701
251 Ga0207687_10507326
252 Ga0207644_10094739
253 Ga0207670_10009594
254 Ga0207691_10006957
255 Ga0207640_10024844
256 Ga0207640_10373465
257 Ga0207658_10044063
258 Ga0207703_10138370
259 Ga0207708_10431871
260 Ga0207648_10005390
261 Ga0207674_10167882
262 Ga0207683_10022074
263 Ga0207428_10008758
264 Ga0307515_10157589
265 Ga0265760_10003102
266 Ga0265327_10045025
267 Ga0307408_100083842
268 Ga0307408_100773398
269 Ga0265314_10021699
270 Ga0265342_10007221
271 Ga0316576_10068297
272 Ga0316578_10267270
273 Ga0307516_10003295
274 Ga0307516_10081296
275 Ga0307405_10463219
276 Ga0307407_10056147
277 Ga0307412_10011570
278 Ga0307412_10272631
279 Ga0307409_100044767
280 Ga0307416_100282700
281 Ga0307414_10311777
282 Ga0307411_10206983
283 Ga0307415_100049716
284 Ga0373936_0211892
285 Ga0373937_0099143
286 Ga0316582_0017440
287 Ga0436361_0552353
288 Ga0436362_0546678
289 Ga0495641_0099725
290 Ga0495637_0001026
291 Ga0495652_0015502
292 Ga0495658_0129023
293 Ga0495660_0125716
294 Ga0495593_0109567
295 Ga0496100_0027508
296 Ga0496100_0155735
297 Ga0496101_0117745
298 Ga0496101_0414702
299 Ga0496104_0103452
300 Ga0496106_0326844
301 Ga0496108_0095756
302 Ga0496108_0371093
303 Ga0496110_0001970
304 Ga0496111_0053624
305 Ga0496111_0075300
306 Ga0496114_0653092
307 Ga0496117_0043698
308 Ga0496118_0008560
309 Ga0496121_0053575
310 Ga0496123_0008443
311 Ga0496124_0213953
312 Ga0496124_0237445
313 Ga0496125_0021154
314 Ga0496125_0080922
315 Ga0496126_0093090
316 Ga0501036_0345832
317 Ga0501038_0220408
318 Ga0501039_0519319
319 Ga0501047_0008581
320 Ga0501070_0060548
321 Ga0501070_0492658
322 Ga0501072_0114244
323 Ga0501072_0691711
324 Ga0501073_0097268
325 Ga0501081_0356406
326 Ga0501035_0148031
327 Ga0501044_0130885
328 Ga0501045_0095852
329 nmdc:mga05p37_7561_c1
330 nmdc:mga09592_1356_c1
331 nmdc:mga09592_4163_c1
332 nmdc:mga0qj67_393650_c1
333 nmdc:mga0qj67_8907_c1
334 nmdc:mga06r32_15696_c1
335 nmdc:mga06r32_347_c1
336 nmdc:mga08y16_328_c1
337 nmdc:mga0n895_2878_c1
338 nmdc:mga0rr50_31418_c1
339 nmdc:mga0rr50_3552_c1
340 nmdc:mga08x19_379796_c1
341 nmdc:mga08x19_52376_c1
342 nmdc:mga0a205_599_c1
343 Ga0500610_0000112
344 Ga0500578_0010253
345 Ga0500607_000040
346 Ga0500607_000787
347 Ga0500636_0001745
348 Ga0500636_0006415
349 Ga0500625_086805
350 Ga0500645_001379
351 Ga0501084_0610173
352 Ga0501082_0094387
353 Ga0501082_0406170
354 Ga0501082_0438870
355 Ga0501082_0657096
356 Ga0530510_0414549
357 2738881196
358 2863073673
359 2895882302
360 2945984982

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

45

247

0.93

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

57

300

0.91

PF08659

KR

KR domain

56

228

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ftp-assembly1.cif.gz_D crystal structure of 3-ketoacyl-(acyl-carrier-protein) reductase from burkholderia pseudomallei at 2.05 a resolution 0.9631 2 261
3ftp-assembly1.cif.gz_C crystal structure of 3-ketoacyl-(acyl-carrier-protein) reductase from burkholderia pseudomallei at 2.05 a resolution 0.9631 2 261
7djs-assembly1.cif.gz_C crystal structure of isopiperitenol dehydrogenase from pseudomonas aeruginosa complexed with nad 0.96 3 263
8hs4-assembly1.cif.gz_B brucella melitensis 7-alpha-hydroxysteroid dehydrogenase mutant: 1-53 truncation/k262t-nad+ 0.9587 2 260
8jf9-assembly1.cif.gz_C crystal structure of 3-oxoacyl-acp reductase fabg from helicobacter pylori 0.9578 2 261
ID Description Score Start End Superfamily
3ftpC00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9631 2 261 3.40.50.720
af_F4J128_251_373_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.957 104 197 3.40.50.720
6ixmB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9567 1 263 3.40.50.720
af_Q5BLE6_285_550_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9525 2 262 3.40.50.720
5jy1D00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9523 2 261 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A6B1A4M9-F1-model_v4 SDR family oxidoreductase 0.9711 2 264 GO:0016491
AF-A0A3C1A2Z9-F1-model_v4 Glucose 1-dehydrogenase (NAD(P)(+)) 0.9682 1 263 GO:0016616
AF-A0A0M3V5J8-F1-model_v4 Short-chain dehydrogenase 0.968 1 263 GO:0016491
AF-A8L1M9-F1-model_v4 deleted 0.9677 4 261
AF-A0A382NFT7-F1-model_v4 Short-chain dehydrogenase/reductase SDR 0.9675 2 181 GO:0016616

Map