F274690

General Info

Members Datasets Scaffolds Average Seq Length
179 108 358 654

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2852623160|2852626757
Length 701
Sequence FERRYVIAGIFITLLLILLGRLFYIQVIDDRYFLYAQNNVVRRYVQYPARGPILDRTGKIMVQNEPIYDIMVVPKQVKPFDTVEFCKLLGIDKEGFDKRFAKAKVYSPIRASVFEKQLTLQSYAAFQERLSEFQGFYPVQRSVRSYPDSAAAQFLGYIGEVTDAIIKRSGGYYSPGDYVGITGVEKSYETILRGQRGVRNLIYDSHNVPKGSYANGAYDTAAVAGERLISSLDMKIQKLGEKLMQNKVGSIVAIEPSTGEILCYVSSPTYDPNLLVGRERGNNAAKLYKDPYKPFFTRPVQAYYPPGSSFKPLSALIAMQEGVITPQTIYHCPGYYQAGNRRIKCFQGEVHGNVDLASAVAHSCNGYFDMVFEKLVNRRGPRYTDTSFNYWRNNVAKFGLGAKLGLDMPNENRGNLPKAAYYDKMYGEGGWRSSTVISLGIGQGELLATPLQLANIEATIANHGYYYKPHLVKAIGDKKVIKHEYKVRNYVGVDSQYFEPVINGMQSVVDYGTAKGSKIPGIIMCGKTGTAEVRNHKDNSVFVAFAPRDKPKIAIAVVVENSGQGATWAAPIASFIVEQYLRGSISKRPSGISPEYYIDKNLLPEIVLKPADKAKLRADSAKKVKADSIKKHKADSLKQASLKTARNNVAKKSSSSELRVSTENQPELVETGAEGLSQLWFDRLTTTSDFTVVLPKRKDDE

Samples

Sample ID Description Type Environment
1 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
2 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300004799 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
7 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
8 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
9 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
10 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
11 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
12 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
13 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
14 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
20 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
21 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
22 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
23 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
24 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
25 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
26 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
27 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
30 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
31 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
32 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
33 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
34 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
35 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
36 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
37 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
38 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
39 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
40 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
41 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
42 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
43 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
61 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
62 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
63 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
64 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
65 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
66 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
67 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
68 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
69 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
70 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
71 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
72 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
73 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
74 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
75 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
76 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
77 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
78 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
79 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
80 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
81 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
82 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
83 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
84 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
85 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
86 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
87 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
88 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
89 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
90 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
91 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
92 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
93 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
94 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
95 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
96 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
97 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
98 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
99 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
100 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
101 2890737413 Parapedobacter sp. SGR-10 Isolate Rhizosphere
102 2896344016 Sphingobacterium sp. SGL-16 Isolate Rhizosphere
103 2898713307 Sphingobacterium sp. SGG-5 Isolate Rhizosphere
104 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
105 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
106 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
107 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified
108 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 93.85
Metatranscriptomes 0.56
Isolates 5.59

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.94
Nodule 0
Rhizoplane 0.56
Rhizosphere 81.01
Stem 0
Stem Tuber 0
Unclassified 3.91

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10000009 3300002067 Bacteria 247425
2 JGI24735J21928_10005148 3300002067 Bacteria 4351
3 JGI25162J39368_1000039 3300002737 Bacteria 175976
4 JGI25162J39368_1000629 3300002737 Bacteria 25079
5 rootH1_10070965 3300003316 Bacteria 4606
6 rootH1_10133809 3300003316 Bacteria 10911
7 rootH2_10027812 3300003320 Bacteria 13843
8 rootH2_10094012 3300003320 Bacteria 5069
9 rootH1_10013272 3300003323 Bacteria 21197
10 rootH1_10064052 3300003323 Bacteria 6623
11 rootH1_10123118 3300003323 Bacteria 4948
12 rootH1_10250780 3300003323 Bacteria 4285
13 Ga0058863_11913613 3300004799 Bacteria 5880
14 Ga0065714_10003435 3300005288 Bacteria 7579
15 Ga0065714_10074153 3300005288 Bacteria 3077
16 Ga0070658_10000435 3300005327 Bacteria 36388
17 Ga0070658_10026164 3300005327 Bacteria 4681
18 Ga0070683_100030154 3300005329 Bacteria 4919
19 Ga0070660_100070641 3300005339 Bacteria 2725
20 Ga0070673_100040472 3300005364 Bacteria 3576
21 Ga0070659_100000107 3300005366 Bacteria 61453
22 Ga0070659_100010674 3300005366 Bacteria 6765
23 Ga0070662_100002133 3300005457 Bacteria 12133
24 Ga0070679_100017587 3300005530 Bacteria 6920
25 Ga0070665_100000147 3300005548 Bacteria 129683
26 Ga0068855_100000009 3300005563 Bacteria 246035
27 Ga0068855_100000275 3300005563 Bacteria 63345
28 Ga0068855_100028906 3300005563 Bacteria 6632
29 Ga0068855_100043711 3300005563 Bacteria 5305
30 Ga0068856_100001199 3300005614 Bacteria 27292
31 Ga0068856_100001297 3300005614 Bacteria 26299
32 Ga0068856_100004678 3300005614 Bacteria 13586
33 Ga0068852_100000913 3300005616 Bacteria 19584
34 Ga0068866_10012758 3300005718 Unclassified 3667
35 Ga0075366_10000475 3300006195 Bacteria 18607
36 Ga0075366_10006639 3300006195 Bacteria 6350
37 Ga0097621_100000551 3300006237 Bacteria 26354
38 Ga0068871_100002118 3300006358 Bacteria 13443
39 Ga0068865_100000309 3300006881 Bacteria 26968
40 Ga0105240_10002371 3300009093 Bacteria 30384
41 Ga0105240_10033023 3300009093 Bacteria 6691
42 Ga0105241_10000781 3300009174 Bacteria 24157
43 Ga0105241_10009305 3300009174 Bacteria 7223
44 Ga0105241_10009308 3300009174 Bacteria 7222
45 Ga0105241_10014071 3300009174 Bacteria 5863
46 Ga0105237_10000254 3300009545 Bacteria 75712
47 Ga0105237_10001116 3300009545 Bacteria 35964
48 Ga0105238_10006406 3300009551 Bacteria 11710
49 Ga0105239_10000015 3300010375 Bacteria 319892
50 Ga0105239_10000040 3300010375 Bacteria 201445
51 Ga0105239_10001808 3300010375 Bacteria 28085
52 Ga0105239_10021301 3300010375 Bacteria 7148
53 Ga0105239_10021435 3300010375 Bacteria 7124
54 Ga0105239_10064097 3300010375 Bacteria 4034
55 Ga0157373_10000034 3300013100 Bacteria 124053
56 Ga0157373_10000509 3300013100 Bacteria 30602
57 Ga0157373_10023373 3300013100 Bacteria 4482
58 Ga0157371_10000421 3300013102 Bacteria 52219
59 Ga0157371_10004145 3300013102 Bacteria 12781
60 Ga0157371_10009252 3300013102 Bacteria 7773
61 Ga0157371_10010671 3300013102 Bacteria 7134
62 Ga0157370_10005913 3300013104 Bacteria 13639
63 Ga0157369_10001134 3300013105 Bacteria 33314
64 Ga0157374_10019234 3300013296 Bacteria 6042
65 Ga0157374_10088041 3300013296 Unclassified 2957
66 Ga0157378_10010841 3300013297 Bacteria 7969
67 Ga0157378_10032790 3300013297 Bacteria 4591
68 Ga0163162_10001293 3300013306 Bacteria 23397
69 Ga0163162_10004047 3300013306 Bacteria 14065
70 Ga0157372_10000099 3300013307 Bacteria 89946
71 Ga0157372_10001816 3300013307 Bacteria 23157
72 Ga0157372_10006898 3300013307 Bacteria 12086
73 Ga0163161_10009320 3300017792 Bacteria 6793
74 Ga0213872_10004103 3300021361 Bacteria 7839
75 Ga0207427_100323 3300025231 Bacteria 32232
76 Ga0209437_100093 3300025233 Bacteria 239733
77 Ga0209437_100135 3300025233 Bacteria 176455
78 Ga0209026_1000225 3300025250 Bacteria 77234
79 Ga0209233_1000486 3300025261 Bacteria 24139
80 Ga0209233_1002681 3300025261 Bacteria 6446
81 Ga0207647_10000223 3300025904 Bacteria 46793
82 Ga0207647_10000258 3300025904 Bacteria 43440
83 Ga0207645_10001313 3300025907 Bacteria 20428
84 Ga0207705_10000043 3300025909 Bacteria 181491
85 Ga0207654_10021045 3300025911 Unclassified 3464
86 Ga0207695_10000053 3300025913 Bacteria 396740
87 Ga0207695_10005297 3300025913 Bacteria 17193
88 Ga0207695_10031848 3300025913 Bacteria 5777
89 Ga0207671_10001672 3300025914 Bacteria 25198
90 Ga0207671_10002373 3300025914 Bacteria 20241
91 Ga0207671_10003374 3300025914 Bacteria 15992
92 Ga0207671_10009787 3300025914 Bacteria 7977
93 Ga0207671_10032839 3300025914 Bacteria 3863
94 Ga0207657_10043149 3300025919 Bacteria 3975
95 Ga0207652_10013164 3300025921 Bacteria 6697
96 Ga0207690_10000147 3300025932 Bacteria 56329
97 Ga0207690_10006810 3300025932 Bacteria 6777
98 Ga0207706_10001583 3300025933 Bacteria 22590
99 Ga0207667_10000045 3300025949 Bacteria 246053
100 Ga0207667_10028312 3300025949 Bacteria 6087
101 Ga0207677_10002238 3300026023 Bacteria 10164
102 Ga0207678_10007480 3300026067 Bacteria 9654
103 Ga0207702_10006791 3300026078 Bacteria 9814
104 Ga0207702_10010525 3300026078 Bacteria 7735
105 Ga0207702_10017756 3300026078 Bacteria 5889
106 Ga0207648_10023399 3300026089 Bacteria 5534
107 Ga0207698_10000512 3300026142 Bacteria 22530
108 Ga0268266_10000030 3300028379 Bacteria 417120
109 Ga0307515_10001915 3300028794 Bacteria 46153
110 Ga0307515_10029144 3300028794 Bacteria 9347
111 Ga0307509_10066522 3300031507 Bacteria 3781
112 Ga0316579_10034357 3300031691 Bacteria 2333
113 Ga0316578_10004037 3300031728 Bacteria 6857
114 Ga0316578_10014973 3300031728 Unclassified 4158
115 Ga0316578_10067931 3300031728 Bacteria 2107
116 Ga0316585_10005346 3300032137 Unclassified 3623
117 Ga0316580_10012432 3300032139 Bacteria 2594
118 Ga0307507_10000152 3300033179 Bacteria 122095
119 Ga0316584_0033964 3300036712 Bacteria 3779
120 Ga0395899_0000002 3300037312 Bacteria 1324310
121 Ga0395899_0000569 3300037312 Bacteria 39364
122 Ga0395899_0001386 3300037312 Bacteria 20798
123 Ga0395900_0000115 3300037418 Bacteria 138474
124 Ga0395900_0000194 3300037418 Bacteria 97768
125 Ga0395898_0074551 3300037466 Bacteria 3278
126 Ga0395905_0000045 3300037471 Bacteria 241370
127 Ga0395905_0000971 3300037471 Bacteria 36768
128 Ga0395901_0000706 3300038443 Bacteria 38128
129 Ga0395901_0003779 3300038443 Bacteria 15252
130 Ga0436361_1219998 3300039447 Bacteria 14535
131 Ga0451795_0181598 3300041456 Bacteria 3289
132 Ga0453684_0003379 3300044712 Bacteria 36116
133 Ga0453684_0044506 3300044712 Bacteria 5937
134 Ga0453684_0112279 3300044712 Bacteria 3309
135 Ga0466958_0080228 3300045836 Unclassified 2007
136 Ga0495650_0000023 3300046471 Bacteria 527763
137 Ga0495585_0000065 3300046492 Bacteria 108945
138 Ga0495585_0000268 3300046492 Bacteria 52128
139 Ga0495596_0028452 3300046500 Unclassified 2244
140 Ga0495583_0020615 3300046506 Bacteria 3409
141 Ga0495610_0001292 3300046512 Bacteria 22302
142 Ga0495616_0000999 3300046513 Bacteria 20246
143 Ga0495616_0003701 3300046513 Bacteria 9765
144 Ga0495648_0008346 3300046524 Bacteria 8165
145 Ga0495633_0000032 3300046558 Bacteria 193765
146 Ga0495633_0021675 3300046558 Bacteria 3210
147 Ga0495668_0000009 3300046616 Bacteria 492623
148 Ga0495625_0000211 3300046660 Bacteria 92222
149 Ga0495625_0001975 3300046660 Bacteria 23138
150 Ga0495625_0002805 3300046660 Bacteria 18362
151 Ga0495625_0014065 3300046660 Bacteria 6404
152 Ga0495625_0021014 3300046660 Bacteria 5032
153 Ga0495625_0037940 3300046660 Bacteria 3530
154 Ga0495661_0000555 3300046665 Bacteria 38650
155 Ga0495661_0019134 3300046665 Bacteria 4493
156 Ga0495649_0000090 3300046694 Bacteria 78509
157 Ga0495687_013064 3300047443 Bacteria 4351
158 Ga0495687_037983 3300047443 Bacteria 2141
159 Ga0495677_0025857 3300047445 Bacteria 2129
160 Ga0495686_0000237 3300047472 Bacteria 100373
161 Ga0495686_0002992 3300047472 Bacteria 15038
162 Ga0495678_007357 3300049459 Bacteria 5719
163 nmdc:mga0k408_1133_c2 3300050493 Bacteria 11255
164 nmdc:mga0k408_276_c1 3300050493 Bacteria 27939
165 Ga0500635_0000344 3300053080 Bacteria 15391
166 Ga0500618_000057 3300053125 Bacteria 98383
167 Ga0500642_0012637 3300053130 Bacteria 3072
168 Ga0500622_0005706 3300053156 Bacteria 7400
169 Ga0500624_000404 3300053157 Bacteria 13392
170 2852626757 2852623160 Bacteria 4376875
171 2884934014 2884933994 Bacteria 4535041
172 2890739908 2890737413 Bacteria 4269751
173 2896345792 2896344016 Bacteria 3811746
174 2898714949 2898713307 Bacteria 4110805
175 2928082413 2928078545 Bacteria 6534839
176 2928149003 2928147474 Bacteria 6512076
177 2932087533 2932082852 Bacteria 6563563
178 2977236194 2977232053 Bacteria 5485925
179 3003234562 3003233435 Bacteria 4458031
180 JGI24735J21928_10000009
181 JGI24735J21928_10005148
182 JGI25162J39368_1000039
183 JGI25162J39368_1000629
184 rootH1_10070965
185 rootH1_10133809
186 rootH2_10027812
187 rootH2_10094012
188 rootH1_10013272
189 rootH1_10064052
190 rootH1_10123118
191 rootH1_10250780
192 Ga0058863_11913613
193 Ga0065714_10003435
194 Ga0065714_10074153
195 Ga0070658_10000435
196 Ga0070658_10026164
197 Ga0070683_100030154
198 Ga0070660_100070641
199 Ga0070673_100040472
200 Ga0070659_100000107
201 Ga0070659_100010674
202 Ga0070662_100002133
203 Ga0070679_100017587
204 Ga0070665_100000147
205 Ga0068855_100000009
206 Ga0068855_100000275
207 Ga0068855_100028906
208 Ga0068855_100043711
209 Ga0068856_100001199
210 Ga0068856_100001297
211 Ga0068856_100004678
212 Ga0068852_100000913
213 Ga0068866_10012758
214 Ga0075366_10000475
215 Ga0075366_10006639
216 Ga0097621_100000551
217 Ga0068871_100002118
218 Ga0068865_100000309
219 Ga0105240_10002371
220 Ga0105240_10033023
221 Ga0105241_10000781
222 Ga0105241_10009305
223 Ga0105241_10009308
224 Ga0105241_10014071
225 Ga0105237_10000254
226 Ga0105237_10001116
227 Ga0105238_10006406
228 Ga0105239_10000015
229 Ga0105239_10000040
230 Ga0105239_10001808
231 Ga0105239_10021301
232 Ga0105239_10021435
233 Ga0105239_10064097
234 Ga0157373_10000034
235 Ga0157373_10000509
236 Ga0157373_10023373
237 Ga0157371_10000421
238 Ga0157371_10004145
239 Ga0157371_10009252
240 Ga0157371_10010671
241 Ga0157370_10005913
242 Ga0157369_10001134
243 Ga0157374_10019234
244 Ga0157374_10088041
245 Ga0157378_10010841
246 Ga0157378_10032790
247 Ga0163162_10001293
248 Ga0163162_10004047
249 Ga0157372_10000099
250 Ga0157372_10001816
251 Ga0157372_10006898
252 Ga0163161_10009320
253 Ga0213872_10004103
254 Ga0207427_100323
255 Ga0209437_100093
256 Ga0209437_100135
257 Ga0209026_1000225
258 Ga0209233_1000486
259 Ga0209233_1002681
260 Ga0207647_10000223
261 Ga0207647_10000258
262 Ga0207645_10001313
263 Ga0207705_10000043
264 Ga0207654_10021045
265 Ga0207695_10000053
266 Ga0207695_10005297
267 Ga0207695_10031848
268 Ga0207671_10001672
269 Ga0207671_10002373
270 Ga0207671_10003374
271 Ga0207671_10009787
272 Ga0207671_10032839
273 Ga0207657_10043149
274 Ga0207652_10013164
275 Ga0207690_10000147
276 Ga0207690_10006810
277 Ga0207706_10001583
278 Ga0207667_10000045
279 Ga0207667_10028312
280 Ga0207677_10002238
281 Ga0207678_10007480
282 Ga0207702_10006791
283 Ga0207702_10010525
284 Ga0207702_10017756
285 Ga0207648_10023399
286 Ga0207698_10000512
287 Ga0268266_10000030
288 Ga0307515_10001915
289 Ga0307515_10029144
290 Ga0307509_10066522
291 Ga0316579_10034357
292 Ga0316578_10004037
293 Ga0316578_10014973
294 Ga0316578_10067931
295 Ga0316585_10005346
296 Ga0316580_10012432
297 Ga0307507_10000152
298 Ga0316584_0033964
299 Ga0395899_0000002
300 Ga0395899_0000569
301 Ga0395899_0001386
302 Ga0395900_0000115
303 Ga0395900_0000194
304 Ga0395898_0074551
305 Ga0395905_0000045
306 Ga0395905_0000971
307 Ga0395901_0000706
308 Ga0395901_0003779
309 Ga0436361_1219998
310 Ga0451795_0181598
311 Ga0453684_0003379
312 Ga0453684_0044506
313 Ga0453684_0112279
314 Ga0466958_0080228
315 Ga0495650_0000023
316 Ga0495585_0000065
317 Ga0495585_0000268
318 Ga0495596_0028452
319 Ga0495583_0020615
320 Ga0495610_0001292
321 Ga0495616_0000999
322 Ga0495616_0003701
323 Ga0495648_0008346
324 Ga0495633_0000032
325 Ga0495633_0021675
326 Ga0495668_0000009
327 Ga0495625_0000211
328 Ga0495625_0001975
329 Ga0495625_0002805
330 Ga0495625_0014065
331 Ga0495625_0021014
332 Ga0495625_0037940
333 Ga0495661_0000555
334 Ga0495661_0019134
335 Ga0495649_0000090
336 Ga0495687_013064
337 Ga0495687_037983
338 Ga0495677_0025857
339 Ga0495686_0000237
340 Ga0495686_0002992
341 Ga0495678_007357
342 nmdc:mga0k408_1133_c2
343 nmdc:mga0k408_276_c1
344 Ga0500635_0000344
345 Ga0500618_000057
346 Ga0500642_0012637
347 Ga0500622_0005706
348 Ga0500624_000404
349 2852626757
350 2884934014
351 2890739908
352 2896345792
353 2898714949
354 2928082413
355 2928149003
356 2932087533
357 2977236194
358 3003234562

MSA Aligner

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03717

PBP_dimer

Penicillin-binding Protein dimerisation domain

45

213

0.94

PF00905

Transpeptidase

Penicillin binding protein transpeptidase domain

249

578

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
6mki-assembly1.cif.gz_A crystal structure of penicillin-binding protein 4 (pbp4) from enterococcus faecalis in the ceftaroline-bound form 0.8783 52 590
6mki-assembly1.cif.gz_A crystal structure of penicillin-binding protein 4 (pbp4) from enterococcus faecalis in the ceftaroline-bound form 0.8743 52 590
7kis-assembly1.cif.gz_A crystal structure of pseudomonas aeruginosa pbp2 in complex with wck 5153 0.8699 46 590
6bsr-assembly1.cif.gz_A crystal structure of penicillin-binding protein 4 (pbp4) from enterococcus faecalis in the benzylpenicillin bound form. 0.867 53 590
7kis-assembly2.cif.gz_B crystal structure of pseudomonas aeruginosa pbp2 in complex with wck 5153 0.8633 50 590
ID Description Score Start End Superfamily
3oc2A02 Alpha Beta;2-Layer Sandwich;Beta-Lactamase; 0.8981 518 586 3.30.450.330
3ue3A03 Alpha Beta;3-Layer(aba) Sandwich;Beta-lactamase;DD-peptidase/beta-lactamase superfamily 0.8783 302 513 3.40.710.10
3ue3A03 Alpha Beta;3-Layer(aba) Sandwich;Beta-lactamase;DD-peptidase/beta-lactamase superfamily 0.8648 302 513 3.40.710.10
5uy7A00 Alpha Beta;3-Layer(aba) Sandwich;Beta-lactamase;DD-peptidase/beta-lactamase superfamily 0.8622 236 590 3.40.710.10
af_P0AD65_248_620_3.40.710.10 Alpha Beta;3-Layer(aba) Sandwich;Beta-lactamase;DD-peptidase/beta-lactamase superfamily 0.8539 232 588 3.40.710.10
ID Description Score Start End GO Terms
AF-A0A7C6EUR5-F1-model_v4 Penicillin-binding protein 2 0.9706 260 590 GO:0005886
GO:0008360
GO:0008658
GO:0009252
GO:0071555
GO:0071972
AF-A0A520EA67-F1-model_v4 Penicillin-binding protein 2 0.9686 122 608 GO:0005886
GO:0008360
GO:0008658
GO:0009252
GO:0071555
GO:0071972
AF-A0A7V4YYF2-F1-model_v4 Penicillin-binding protein transpeptidase domain-containing protein 0.9519 485 590 GO:0005886
GO:0008360
GO:0008658
GO:0009252
GO:0071555
GO:0071972
AF-A0A5J4P5M0-F1-model_v4 Penicillin-binding protein 2 0.9494 366 529 GO:0005886
GO:0008360
GO:0008658
GO:0009252
GO:0071555
GO:0071972
AF-A0A7V6RHT7-F1-model_v4 Penicillin-binding protein 2 (EC 3.4.16.4) 0.9455 1 607 GO:0005886
GO:0008360
GO:0008658
GO:0009002
GO:0009252
GO:0071555
GO:0071972

Map