F274682

General Info

Members Datasets Scaffolds Average Seq Length
179 148 113 1459

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2816332280|2817414366
Length 1527
Sequence MKGVGFGALKLDFYNSMYLIFDTETTGLPKRWDAPITDSDNWPRCIQIAWQLHDEMGQLVEHQDYLVKPEGFNIPYDAERIHGISTELAEADGITLAEVLEKFNIALSKTKFIVGQNLGFDVNIMGAEFHRMGVDSTMASIPVLDTCTEVTASLLQLPGGRGGKFKLPTLTELHEYLFNVPFAEAHNATADVEATTRCFLELVRREVFTKEELDVPKEYFKDFQERNPEPFKLIGLKHINLKAASDKIREQLKALAAEGQQNVVSEEDKADFKAAKFAHLHNHTQFSVLQSTIGIGNIVAATAKNGMPAVAMTDTGNMMGAFHFVSAVMNHNKGASAKNKALVEAGEEPTETEIKPIVGCEFNICDNHLDKSKKDNGYQVVLLAKNKAGYHNLAKMASIAYTDGFYYVPRIDRTIVEQYKGDIMVLSGNLYGEIPSKILNIGENQAEEALIWWKEQFGEDFYLEVMRHNQEDENRVNKTLIEFSKKHDVKLIATNNTYYLNKEDANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSQDEMKKLFADLPEAIINIQEIIDKVEGYSLYRDVLLPKFEIPDEFVDPEDEKDNGVRGENAYLRHLTMEGAKRRYGEITESIQERLDFELMTISNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAAGSAVAYCLGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMEYVINKYGQKQVAQIITYGKMATKSAIRDTARVLDLPLFEADRIAKLIPGMMPSKWNLARFISESEEEIKKALRSDEFDNVKELIAIANEDDLAGETIQQAKILEGSMRNTGIHACGVIITPSDITNYVPVTTAKDSDLYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIELNPDTFPIDDEETYALFQRGETVGIFQYESPGMQKYMKDLKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGDEEIKYDLDACAEYLSETYGITVYQEQVMLLSQSLAGFTKGEADVLRKAMGKKQKDVLDKMKPKFVEQAAAKGHDAKILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMNDIKQVSFFMEECKRMGLQVLGPCVNESYYKFTVNDDYAVRFGMGAIKGVGAGAVETIVENRKDGRYKSIFDLAKRIDLRAANKKAIENLALAGGFDSFEGTTRAQYFHDDGDGITFYEKAMRYGSKFQENENSSQVSLFGETSEVQIAEPVVPPCEDWSTMEKLAKEKEVVGIYISGHPLDDFRFEMKYFCNARLEALKSMNEYVGKNLMFAGIINNVQHRVAKNGKGWAAFNLEGYDESYEFKIFGEEYLKFRHFLIQNNFAFIKILIKDGWVNHDTGKKSDPRMQFVEIRQLQDILEAFAKKLIVLLNIKDLHPEFIHKLSHLFAENKGENSVTFEIMELEKIKRLVEVETPTDFEADDAVFEDENENEDAALESTKVQEVNEVEEIKVVTKLTMPSRRVKVRISTELLQELEKMQINFKLN

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2513020052 Flavobacterium sp. CF136 Isolate Rhizosphere
3 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
4 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
5 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
6 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
7 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
8 2643221725 Flavobacterium sp. Root935 Isolate Unclassified
9 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
10 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
11 2738541283 Pedobacter sp. OK701 Isolate Unclassified
12 2738541284 Pedobacter sp. YR016 Isolate Unclassified
13 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
14 2738541302 Pedobacter sp. CF074 Isolate Unclassified
15 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
16 2738543023 Pedobacter sp. OK628 Isolate Unclassified
17 2739367651 Pedobacter sp. OK291 Isolate Unclassified
18 2739367656 Pedobacter sp. CF523 Isolate Unclassified
19 2739367663 Pedobacter sp. YR510 Isolate Unclassified
20 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
21 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
22 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
23 2802428842 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Isolate Unclassified
24 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
25 2818991437 Pedobacter terrae 518 Isolate Unclassified
26 2833640130 Mariniflexile sp. TRM1-10 Isolate Rhizosphere
27 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
28 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
29 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
30 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
31 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
32 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
33 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
34 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
35 2881247448 Flavobacterium beibuense RSKm HC5 Isolate Rhizosphere
36 2881359912 Flavobacterium ustbae T13 Isolate Rhizosphere
37 2884634485 Algoriphagus kandeliae XY-J91 Isolate Unclassified
38 2890737413 Parapedobacter sp. SGR-10 Isolate Rhizosphere
39 2890804823 Fluviicola sp. SGL-29 Isolate Rhizosphere
40 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
41 2896344016 Sphingobacterium sp. SGL-16 Isolate Rhizosphere
42 2898713307 Sphingobacterium sp. SGG-5 Isolate Rhizosphere
43 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
44 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
45 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
46 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
47 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
48 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
49 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
50 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
51 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
52 2919509842 Flavobacterium arsenatis 3773 Isolate Unclassified
53 2919683626 Flavobacterium piscis 4129 Isolate Unclassified
54 2919692658 Algoriphagus sp. 4150 Isolate Rhizosphere
55 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
56 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
57 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
58 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
59 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
60 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
61 2965320100 Flavobacterium agri MAH-1 Isolate Rhizosphere
62 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified
63 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
64 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
65 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
66 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
67 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
68 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
69 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
70 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
71 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
72 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
73 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
74 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
75 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
76 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
77 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
78 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
79 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
80 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
81 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
82 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
83 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
84 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
85 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
86 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
87 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
88 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
89 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
90 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
91 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
92 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
93 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
94 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
95 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
96 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
97 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
98 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
101 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
102 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
103 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
104 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
105 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
106 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
107 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
108 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
109 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
110 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
111 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
112 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
113 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
114 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
115 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
116 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
117 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
118 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
119 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
120 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
121 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
122 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
123 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
124 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
125 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
126 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
127 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
128 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
129 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
130 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
131 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
132 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
133 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
134 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
135 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
136 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
137 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
138 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
139 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
140 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
141 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
142 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
143 8036736890 Flavobacterium dauae TCH3-2 Isolate Rhizosphere
144 8054307821 Flavobacterium soyae SCIV07 Isolate Rhizosphere
145 8055419101 Flavobacterium tyrosinilyticum KCTC 42726 Isolate Rhizosphere
146 8055588893 Parapedobacter lycopersici KACC 18788 Isolate Rhizosphere
147 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere
148 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 62.57
Metatranscriptomes 0
Isolates 37.43

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.73
Nodule 1.12
Rhizoplane 0
Rhizosphere 62.01
Stem 0
Stem Tuber 0
Unclassified 25.14

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_3265989 2162886007 Bacteria 9688
2 JGI25150J39212_1000001 3300002774 Bacteria 1318726
3 JGI25151J46595_10000001 3300003187 Bacteria 887211
4 JGI25153J46596_10000001 3300003215 Bacteria 748985
5 rootH2_10046025 3300003320 Bacteria 22595
6 rootL2_10020637 3300003322 Bacteria 9512
7 rootH1_10003093 3300003316 Bacteria 4828
8 rootH1_10003093 3300003323 Bacteria 41197
9 rootH1_10010324 3300003323 Bacteria 9076
10 Ga0055536_1000001 3300003781 Bacteria 630663
11 Ga0055530_10000347 3300003791 Bacteria 41846
12 Ga0055531_10000906 3300003794 Bacteria 24099
13 Ga0065165_1002065 3300005262 Bacteria 18554
14 Ga0065714_10002409 3300005288 Bacteria 19008
15 Ga0065714_10002830 3300005288 Bacteria 20493
16 Ga0065714_10068012 3300005288 Bacteria 5009
17 Ga0065714_10068505 3300005288 Bacteria 4693
18 Ga0065704_10070578 3300005289 Bacteria 20011
19 Ga0065704_10074022 3300005289 Bacteria 6596
20 Ga0079104_1000307 3300006946 Bacteria 61994
21 Ga0105244_10000025 3300009036 Bacteria 217877
22 Ga0111539_10008881 3300009094 Bacteria 12726
23 Ga0105243_10000141 3300009148 Bacteria 82657
24 Ga0105237_10000578 3300009545 Bacteria 51257
25 Ga0157373_10000003 3300013100 Bacteria 454601
26 Ga0157373_10001189 3300013100 Bacteria 19925
27 Ga0157371_10000016 3300013102 Bacteria 330495
28 Ga0157371_10000689 3300013102 Bacteria 39887
29 Ga0157371_10001880 3300013102 Bacteria 21002
30 Ga0157371_10002114 3300013102 Bacteria 19341
31 Ga0157370_10000676 3300013104 Bacteria 42494
32 Ga0157370_10002460 3300013104 Bacteria 22346
33 Ga0157370_10003457 3300013104 Bacteria 18521
34 Ga0157370_10004760 3300013104 Bacteria 15446
35 Ga0157369_10000478 3300013105 Bacteria 53035
36 Ga0163162_10000358 3300013306 Bacteria 41309
37 Ga0163162_10034866 3300013306 Bacteria 5009
38 Ga0157380_10005339 3300014326 Bacteria 8977
39 Ga0182008_10000024 3300014497 Bacteria 199978
40 Ga0182008_10000602 3300014497 Bacteria 26447
41 Ga0182006_1000364 3300015261 Bacteria 37793
42 Ga0182006_1000373 3300015261 Bacteria 37119
43 Ga0182006_1000378 3300015261 Bacteria 37025
44 Ga0182007_10000003 3300015262 Bacteria 548244
45 Ga0182007_10005525 3300015262 Bacteria 5537
46 Ga0183373_1001 3300015682 Bacteria 1410374
47 Ga0163161_10000074 3300017792 Bacteria 101784
48 Ga0163161_10000123 3300017792 Bacteria 72760
49 Ga0163161_10000641 3300017792 Bacteria 27918
50 Ga0163161_10000658 3300017792 Bacteria 27592
51 Ga0207425_1000002 3300025245 Bacteria 1362590
52 Ga0209129_1000002 3300025258 Bacteria 1359086
53 Ga0209676_1000008 3300025292 Bacteria 991778
54 Ga0209025_1000004 3300025294 Bacteria 1361782
55 Ga0209758_1000006 3300025297 Bacteria 1359562
56 Ga0209050_1000045 3300025298 Bacteria 388022
57 Ga0209257_1000006 3300025304 Bacteria 1570111
58 Ga0207655_1000003 3300025728 Bacteria 1081376
59 Ga0207709_10000072 3300025935 Bacteria 178084
60 Ga0209281_1000115 3300027111 Bacteria 210393
61 Ga0307515_10000069 3300028794 Bacteria 240743
62 Ga0316183_1175000 3300030742 Bacteria 46866
63 Ga0307408_100000141 3300031548 Bacteria 80201
64 Ga0307408_100000510 3300031548 Bacteria 33609
65 Ga0307405_10000003 3300031731 Bacteria 569064
66 Ga0307405_10000004 3300031731 Bacteria 444977
67 Ga0307413_10000149 3300031824 Bacteria 18939
68 Ga0307406_10000011 3300031901 Bacteria 112730
69 Ga0307407_10000030 3300031903 Bacteria 97416
70 Ga0307407_10000238 3300031903 Bacteria 16168
71 Ga0307412_10000065 3300031911 Bacteria 122279
72 Ga0307416_100000175 3300032002 Bacteria 35927
73 Ga0307416_100002028 3300032002 Bacteria 11392
74 Ga0307414_10000014 3300032004 Bacteria 302974
75 Ga0307411_10000003 3300032005 Bacteria 477556
76 Ga0307415_100005106 3300032126 Bacteria 6918
77 Ga0395899_0000006 3300037312 Bacteria 666341
78 Ga0395905_0001131 3300037471 Bacteria 33375
79 Ga0395901_0001565 3300038443 Bacteria 23716
80 Ga0400490_45660 3300038726 Bacteria 57177
81 Ga0451577_0002813 3300042876 Bacteria 20055
82 Ga0453684_0001740 3300044712 Bacteria 58254
83 Ga0453684_0006319 3300044712 Bacteria 22619
84 Ga0453684_0027908 3300044712 Bacteria 8075
85 Ga0451576_0005698 3300045051 Bacteria 15537
86 Ga0495627_002895 3300046453 Bacteria 7904
87 Ga0495638_0000006 3300046460 Bacteria 668846
88 Ga0495607_0010868 3300046501 Bacteria 6091
89 Ga0495610_0001661 3300046512 Bacteria 19543
90 Ga0495610_0002433 3300046512 Bacteria 15661
91 Ga0495643_0000378 3300046522 Bacteria 59359
92 Ga0496116_0000002 3300048919 Bacteria 920291
93 Ga0496116_0002559 3300048919 Bacteria 18985
94 Ga0496117_0000407 3300048920 Bacteria 72427
95 Ga0496118_0013002 3300048921 Bacteria 7920
96 Ga0496123_0002108 3300048926 Bacteria 25536
97 Ga0496125_0000007 3300048928 Bacteria 715355
98 Ga0496125_0000072 3300048928 Bacteria 238328
99 Ga0496126_0001788 3300048929 Bacteria 31699
100 Ga0501249_000048 3300049679 Bacteria 50617
101 Ga0501241_000353 3300049758 Bacteria 10084
102 Ga0501264_000096 3300049761 Bacteria 13033
103 Ga0501266_000001 3300049763 Bacteria 562004
104 Ga0501280_000441 3300049776 Bacteria 9911
105 Ga0501035_0008361 3300049822 Bacteria 9634
106 nmdc:mga08y16_25761_c1 3300050511 Bacteria 6206
107 Ga0500651_0000825 3300053093 Bacteria 15186
108 Ga0500641_0000004 3300053096 Bacteria 263911
109 Ga0500658_0000001 3300053134 Bacteria 592738
110 Ga0500616_0000065 3300053153 Bacteria 239287
111 Ga0500622_0000018 3300053156 Bacteria 307548
112 Ga0500622_0000076 3300053156 Bacteria 108680
113 Ga0500622_0001403 3300053156 Bacteria 19417

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044712 Ga0453684_0027908 Ga0453684_0027908_67_3708 1132
2 iso_pu_bacteria 3003233435 3003235433 1193
3 3300013102 Ga0157371_10000689 Ga0157371_1000068933 1194
4 3300053153 Ga0500616_0000065 Ga0500616_0000065_76258_80361 1312
5 3300003323 rootH1_10010324 rootH1_100103242 1328
6 3300032126 Ga0307415_100005106 Ga0307415_1000051062 1338
7 3300009094 Ga0111539_10008881 Ga0111539_100088814 1340
8 3300050511 nmdc:mga08y16_25761_c1 nmdc:mga08y16_25761_c1_270_4553 1340
9 3300046460 Ga0495638_0000006 Ga0495638_0000006_98676_102866 1341
10 3300053156 Ga0500622_0000018 Ga0500622_0000018_260068_264261 1345
11 3300053156 Ga0500622_0000076 Ga0500622_0000076_40859_45052 1345
12 3300003323 rootH1_10003093 rootH1_1000309313 1350
13 3300003794 Ga0055531_10000906 Ga0055531_100009063 1350
14 3300025304 Ga0209257_1000006 Ga0209257_1000006825 1350
15 3300005262 Ga0065165_1002065 Ga0065165_100206512 1351
16 3300038726 Ga0400490_45660 Ga0400490_45660_25358_29734 1352
17 3300044712 Ga0453684_0006319 Ga0453684_0006319_5491_9780 1354
18 3300045051 Ga0451576_0005698 Ga0451576_0005698_2033_6322 1355
19 3300028794 Ga0307515_10000069 Ga0307515_1000006922 1358
20 3300053156 Ga0500622_0001403 Ga0500622_0001403_4991_9286 1358
21 3300003320 rootH2_10046025 rootH2_100460259 1359
22 3300003322 rootL2_10020637 rootL2_100206376 1359
23 3300014326 Ga0157380_10005339 Ga0157380_100053394 1359
24 3300049761 Ga0501264_000096 Ga0501264_000096_2862_7052 1359
25 iso_pu_bacteria 2884634485 2884636203 1378
26 iso_pu_bacteria 2919692658 2919696172 1378
27 3300042876 Ga0451577_0002813 Ga0451577_0002813_157_4443 1380
28 3300044712 Ga0453684_0001740 Ga0453684_0001740_25704_29990 1380
29 3300009148 Ga0105243_10000141 Ga0105243_100001418 1381
30 3300025935 Ga0207709_10000072 Ga0207709_1000007297 1381
31 3300048919 Ga0496116_0002559 Ga0496116_0002559_7571_11989 1388
32 3300048920 Ga0496117_0000407 Ga0496117_0000407_62317_66735 1388
33 3300038443 Ga0395901_0001565 Ga0395901_0001565_9170_13549 1392
34 3300037312 Ga0395899_0000006 Ga0395899_0000006_210212_214582 1394
35 3300037471 Ga0395905_0001131 Ga0395905_0001131_14003_18472 1400
36 3300031903 Ga0307407_10000238 Ga0307407_100002382 1401
37 3300031548 Ga0307408_100000510 Ga0307408_1000005108 1402
38 3300031901 Ga0307406_10000011 Ga0307406_1000001198 1402
39 3300032004 Ga0307414_10000014 Ga0307414_10000014222 1402
40 3300049776 Ga0501280_000441 Ga0501280_000441_392_4927 1402
41 3300013306 Ga0163162_10034866 Ga0163162_100348662 1410
42 3300031548 Ga0307408_100000141 Ga0307408_10000014156 1410
43 3300049758 Ga0501241_000353 Ga0501241_000353_5066_9448 1410
44 iso_pu_bacteria 2890804823 2890806493 1420
45 3300006946 Ga0079104_1000307 Ga0079104_100030744 1423
46 3300027111 Ga0209281_1000115 Ga0209281_1000115112 1423
47 iso_pu_bacteria 2919509842 2919510453 1423
48 3300013100 Ga0157373_10000003 Ga0157373_10000003174 1424
49 3300017792 Ga0163161_10000123 Ga0163161_1000012318 1424
50 3300049822 Ga0501035_0008361 Ga0501035_0008361_329_4828 1425
51 iso_pu_bacteria 2513020052 2513235313 1425
52 iso_pu_bacteria 2519899754 2520880715 1425
53 iso_pu_bacteria 2643221600 2644011881 1425
54 iso_pu_bacteria 2643221667 2644371507 1425
55 iso_pu_bacteria 2643221716 2644641159 1425
56 iso_pu_bacteria 2643221725 2644682714 1425
57 iso_pu_bacteria 2738541279 2738733639 1425
58 iso_pu_bacteria 2738541285 2738766404 1425
59 iso_pu_bacteria 2738543007 2739215220 1425
60 iso_pu_bacteria 2739367857 2740000148 1425
61 iso_pu_bacteria 2739367858 2740004964 1425
62 iso_pu_bacteria 2802428842 2802651497 1425
63 iso_pu_bacteria 2857613821 2857615646 1425
64 iso_pu_bacteria 2857618242 2857621639 1425
65 iso_pu_bacteria 2881247448 2881249061 1425
66 iso_pu_bacteria 2881359912 2881361658 1425
67 iso_pu_bacteria 2903895155 2903895443 1425
68 iso_pu_bacteria 2904419702 2904423676 1425
69 iso_pu_bacteria 2904555929 2904558014 1425
70 iso_pu_bacteria 2919191525 2919192645 1425
71 iso_pu_bacteria 2919683626 2919683948 1425
72 iso_pu_bacteria 2929150217 2929151520 1425
73 iso_pu_bacteria 2958458903 2958459791 1425
74 iso_pu_bacteria 8036736890 8036738978 1425
75 iso_pu_bacteria 8054307821 8054309258 1425
76 iso_pu_bacteria 8055592153 8055596138 1425
77 iso_pu_bacteria 8056440228 8056444398 1425
78 iso_pu_bacteria 2833640130 2833641257 1426
79 iso_pu_bacteria 2958512119 2958515008 1426
80 3300049679 Ga0501249_000048 Ga0501249_000048_45415_49959 1427
81 3300005289 Ga0065704_10074022 Ga0065704_100740222 1428
82 3300013104 Ga0157370_10004760 Ga0157370_100047603 1428
83 3300031731 Ga0307405_10000004 Ga0307405_10000004179 1428
84 3300005288 Ga0065714_10068012 Ga0065714_100680121 1429
85 3300005288 Ga0065714_10068505 Ga0065714_100685051 1429
86 3300009036 Ga0105244_10000025 Ga0105244_10000025173 1429
87 3300025728 Ga0207655_1000003 Ga0207655_1000003504 1429
88 3300031824 Ga0307413_10000149 Ga0307413_1000014911 1429
89 3300032002 Ga0307416_100002028 Ga0307416_1000020283 1429
90 3300032005 Ga0307411_10000003 Ga0307411_1000000338 1429
91 3300046522 Ga0495643_0000378 Ga0495643_0000378_44948_49444 1429
92 3300048919 Ga0496116_0000002 Ga0496116_0000002_577612_582144 1429
93 3300048921 Ga0496118_0013002 Ga0496118_0013002_3339_7871 1429
94 3300048928 Ga0496125_0000007 Ga0496125_0000007_576502_581037 1429
95 3300048929 Ga0496126_0001788 Ga0496126_0001788_20151_24683 1429
96 3300049763 Ga0501266_000001 Ga0501266_000001_31386_35930 1429
97 3300053096 Ga0500641_0000004 Ga0500641_0000004_104231_108775 1429
98 3300053134 Ga0500658_0000001 Ga0500658_0000001_416616_421160 1429
99 iso_pu_bacteria 2816332280 2817414366 1429
100 iso_pu_bacteria 8055419101 8055419868 1429
101 3300046453 Ga0495627_002895 Ga0495627_002895_1184_5695 1430
102 3300046501 Ga0495607_0010868 Ga0495607_0010868_933_5450 1430
103 3300048928 Ga0496125_0000072 Ga0496125_0000072_147729_152234 1430
104 iso_pu_bacteria 2965320100 2965321728 1430
105 3300013104 Ga0157370_10000676 Ga0157370_100006762 1436
106 iso_pu_bacteria 2721755487 2722730253 1441
107 iso_pu_bacteria 2896344016 2896346446 1441
108 iso_pu_bacteria 2904780799 2904783896 1441
109 iso_pu_bacteria 2919177583 2919181834 1441
110 3300005288 Ga0065714_10002409 Ga0065714_100024092 1442
111 3300013102 Ga0157371_10000016 Ga0157371_1000001637 1442
112 3300015682 Ga0183373_1001 Ga0183373_1001577 1442
113 3300046512 Ga0495610_0002433 Ga0495610_0002433_5642_10075 1442
114 iso_pu_bacteria 2890737413 2890738669 1442
115 iso_pu_bacteria 2898713307 2898715719 1442
116 iso_pu_bacteria 2896317667 2896317806 1443
117 iso_pu_bacteria 2842903701 2842906924 1446
118 iso_pu_bacteria 8055588893 8055591819 1446
119 iso_pu_bacteria 2739367656 2739617887 1447
120 iso_pu_bacteria 2902048731 2902051256 1447
121 iso_pu_bacteria 2585427687 2586207721 1448
122 iso_pu_bacteria 2738541283 2738755442 1448
123 iso_pu_bacteria 2738541284 2738763496 1448
124 iso_pu_bacteria 2738543023 2739303620 1448
125 iso_pu_bacteria 2739367651 2739590780 1448
126 iso_pu_bacteria 2739367663 2739644164 1448
127 iso_pu_bacteria 2775506987 2776615067 1448
128 iso_pu_bacteria 2818991437 2819546441 1448
129 iso_pu_bacteria 2849281842 2849286072 1448
130 iso_pu_bacteria 2852627209 2852629359 1448
131 iso_pu_bacteria 2857627736 2857629834 1448
132 iso_pu_bacteria 2904445276 2904448753 1448
133 iso_pu_bacteria 2919186247 2919190299 1448
134 iso_pu_bacteria 2939664404 2939668580 1448
135 iso_pu_bacteria 2945997725 2946002065 1448
136 iso_pu_bacteria 2954016120 2954018960 1448
137 3300030742 Ga0316183_1175000 Ga0316183_117500030 1450
138 2162886007 SwRhRL2b_contig_3265989 SwRhRL2b_0035.00001330 1452
139 3300002774 JGI25150J39212_1000001 JGI25150J39212_1000001374 1452
140 3300003187 JGI25151J46595_10000001 JGI25151J46595_10000001427 1452
141 3300003215 JGI25153J46596_10000001 JGI25153J46596_10000001316 1452
142 3300003781 Ga0055536_1000001 Ga0055536_1000001393 1452
143 3300003791 Ga0055530_10000347 Ga0055530_1000034733 1452
144 3300005288 Ga0065714_10002830 Ga0065714_100028308 1452
145 3300005289 Ga0065704_10070578 Ga0065704_1007057813 1452
146 3300009545 Ga0105237_10000578 Ga0105237_1000057846 1452
147 3300013100 Ga0157373_10001189 Ga0157373_100011897 1452
148 3300013102 Ga0157371_10001880 Ga0157371_1000188013 1452
149 3300013102 Ga0157371_10002114 Ga0157371_100021146 1452
150 3300013104 Ga0157370_10002460 Ga0157370_100024602 1452
151 3300013104 Ga0157370_10003457 Ga0157370_1000345716 1452
152 3300013105 Ga0157369_10000478 Ga0157369_100004788 1452
153 3300013306 Ga0163162_10000358 Ga0163162_1000035812 1452
154 3300014497 Ga0182008_10000024 Ga0182008_1000002420 1452
155 3300014497 Ga0182008_10000602 Ga0182008_1000060217 1452
156 3300015261 Ga0182006_1000364 Ga0182006_10003642 1452
157 3300015261 Ga0182006_1000373 Ga0182006_10003735 1452
158 3300015261 Ga0182006_1000378 Ga0182006_10003782 1452
159 3300015262 Ga0182007_10000003 Ga0182007_10000003398 1452
160 3300015262 Ga0182007_10005525 Ga0182007_100055252 1452
161 3300017792 Ga0163161_10000074 Ga0163161_100000742 1452
162 3300017792 Ga0163161_10000641 Ga0163161_1000064121 1452
163 3300017792 Ga0163161_10000658 Ga0163161_100006586 1452
164 3300025245 Ga0207425_1000002 Ga0207425_1000002796 1452
165 3300025258 Ga0209129_1000002 Ga0209129_1000002796 1452
166 3300025292 Ga0209676_1000008 Ga0209676_1000008468 1452
167 3300025294 Ga0209025_1000004 Ga0209025_1000004394 1452
168 3300025297 Ga0209758_1000006 Ga0209758_1000006394 1452
169 3300025298 Ga0209050_1000045 Ga0209050_1000045317 1452
170 3300031731 Ga0307405_10000003 Ga0307405_10000003180 1452
171 3300031903 Ga0307407_10000030 Ga0307407_1000003069 1452
172 3300031911 Ga0307412_10000065 Ga0307412_100000658 1452
173 3300032002 Ga0307416_100000175 Ga0307416_10000017532 1452
174 3300046512 Ga0495610_0001661 Ga0495610_0001661_10734_15167 1452
175 3300048926 Ga0496123_0002108 Ga0496123_0002108_12775_17208 1452
176 3300053093 Ga0500651_0000825 Ga0500651_0000825_4702_9129 1452
177 iso_pu_bacteria 2738541302 2738851887 1452
178 iso_pu_bacteria 2842722452 2842725137 1452
179 iso_pu_bacteria 2842909656 2842914303 1452

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17657

DNA_pol3_finger

Bacterial DNA polymerase III alpha subunit finger domain

883

1046

0.99

PF02811

PHP

PHP domain

279

468

0.95

PF07733

DNA_pol3_alpha

Bacterial DNA polymerase III alpha NTPase domain

604

880

0.93

PF14579

HHH_6

Helix-hairpin-helix motif

1119

1209

0.93

PF00929

RNase_T

Exonuclease

19

199

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
8h2f-assembly1.cif.gz_A crystal structure of dnaq domain in complex witn tmp of streptococcus thermophilus strain dgcc 7710 0.8675 2 192
8h2f-assembly1.cif.gz_A crystal structure of dnaq domain in complex witn tmp of streptococcus thermophilus strain dgcc 7710 0.8211 2 192
4jom-assembly1.cif.gz_A structure of e. coli pol iii 3mphp mutant 0.8045 257 1184
4jom-assembly1.cif.gz_A structure of e. coli pol iii 3mphp mutant 0.8029 257 1184
2hnh-assembly1.cif.gz_A crystal structure of the catalytic alpha subunit of e. coli replicative dna polymerase iii 0.7999 257 1162
ID Description Score Start End Superfamily
2hqaA01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.9022 260 552 3.20.20.140
4iqjC01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.902 259 552 3.20.20.140
4iqjC01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.8892 259 552 3.20.20.140
2hqaA01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.8792 260 552 3.20.20.140
af_P9WNT7_7_294_3.20.20.140 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.8606 259 552 3.20.20.140
ID Description Score Start End GO Terms
AF-X1ABM3-F1-model_v4 PHP domain-containing protein 0.9758 407 547 GO:0006260
GO:0008408
AF-A0A150J7C0-F1-model_v4 DNA polymerase III subunit epsilon 0.9732 2 192 GO:0003676
GO:0008408
AF-A0A374TDZ8-F1-model_v4 Exonuclease domain-containing protein 0.9705 2 193 GO:0003676
GO:0004527
GO:0006259
AF-A0A3D4V0N0-F1-model_v4 DNA polymerase III subunit alpha 0.9616 1 152 GO:0003676
GO:0004527
GO:0006259
AF-A0A519W1L0-F1-model_v4 DNA polymerase III subunit alpha (EC 2.7.7.7) 0.9615 1 785 GO:0003676
GO:0006260
GO:0008408
GO:0016779

Feature Viewer

pLDDT pTM Quality
79.53 0.58 Medium
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Predicted Structure (AlphaFold2)

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