F274476

General Info

Members Datasets Scaffolds Average Seq Length
179 139 128 511

Family's Representative Sequence

Representative Sequence 3300048924|Ga0496121_0014100|Ga0496121_0014100_5583_7235
Length 550
Sequence LGRHFLFSLSTTEGLVTRNGAPLVIMIFEWMSDPAAWAGLATLIVLEIVLGIDNLVFIAILADKLPEHQREKARLIGLGLALGMRLILLASVAWIVTLTAPLFTVAGLEISGRDLILLFGGLFLLFKGTMELHERLEGHSGHKDGKVEHAVFWQVLVQIVVLDAVFSLDSVITAVGMVQHLSVMMIAVIVAVGIMLLCSKPLMAFVSKHPTVVILCLGFLMMIGFSLIVEGLGFHIPKGYLYAAIGFSVLIEAFNQIGRRNRERFMSTGDLRERTASAVLSLLGSRRGESSLGETADVIAERASENELFTPVEHEMIESVLTLADRPAKSVMTHRLDIDWLDIEDSDEELRRKVLESGHSRFPIARGSLDEFLGVALAKDLLRDLIETGKIDFERSLRQPLVVHESVNALRLLEQLRQSPLQVAIVLDEYGSVEGMVTATDLLEAIAGDFADDDEEQLTVERGDDGSLLVDGWIDIRHVSRLLDSDLVDDADRYSTLAGLILWRLGHLPEQGETFTFGGLTYEVVSLDGRNIDKVRIRAASPVGAVAETA

Samples

Sample ID Description Type Environment
1 2513237087 Azorhizobium doebereinerae UFLA1-100 Isolate Nodule
2 2524023250 Niveispirillum irakense DSM 11586 Isolate Unclassified
3 2547132130 Stenotrophomonas maltophilia RR-10 Isolate Unclassified
4 2599185236 Rhizobium sp. NFR07 Isolate Rhizoplane
5 2599185292 Achromobacter sp. NFACC18-2 Isolate Rhizoplane
6 2643221569 Achromobacter sp. Root565 Isolate Unclassified
7 2643221594 Achromobacter sp. Root170 Isolate Unclassified
8 2643221610 Ensifer sp. Root74 Isolate Unclassified
9 2643221621 Achromobacter sp. Root83 Isolate Unclassified
10 2643221643 Rhizobium sp. Root1220 Isolate Unclassified
11 2643221675 Ensifer sp. Root1298 Isolate Unclassified
12 2643221680 Ensifer sp. Root1312 Isolate Unclassified
13 2643221726 Ensifer sp. Root954 Isolate Unclassified
14 2643221733 Bosea sp. Root381 Isolate Unclassified
15 2747842428 Stenotrophomonas sp. WCS2014-113 Isolate Unclassified
16 2765235840 Stenotrophomonas maltophilia AA1 Isolate Unclassified
17 2808606395 Achromobacter sp. SLBN-14 Isolate Unclassified
18 2816332141 Stenotrophomonas muris 1190 (v2) (version 2) Isolate Unclassified
19 2821123053 Rhizobium cellulosilyticum 1193 Isolate Unclassified
20 2838736955 Rhizobium cellulosilyticum SEMIA 448 Isolate Nodule
21 2841840854 Rhizobium cellulosilyticum SEMIA 444 Isolate Nodule
22 2842140634 Rhizobium cellulosilyticum SEMIA 452 Isolate Nodule
23 2842391507 Stenotrophomonas maltophilia SEMIA 4027 Isolate Nodule
24 2842775625 Roseomonas sp. R-71825 Isolate Unclassified
25 2855730933 Achromobacter sp. HZ28 Isolate Nodule
26 2855767633 Achromobacter sp. HZ34 Isolate Nodule
27 2857531043 Neorhizobium sp. R-72160 Isolate Unclassified
28 2857537821 Achromobacter sp. R-71975 Isolate Unclassified
29 2857553236 Duganella sp. R-74557 Isolate Unclassified
30 2857576091 Pigmentiphaga sp. R-72090 Isolate Unclassified
31 2858950400 Achromobacter sp. K91 Isolate Unclassified
32 2874220319 Stenotrophomonas maltophilia PS5 Isolate Unclassified
33 2881412998 Achromobacter aloeverae AVA-1 Isolate Unclassified
34 2895511927 Pseudoxanthomonas sp. SGD-5-1 Isolate Rhizosphere
35 2919089067 Stenotrophomonas sp. 1337 Isolate Rhizosphere
36 2919134579 Stenotrophomonas geniculata 1733 Isolate Rhizosphere
37 2919450847 Ancylobacter sp. 3268 Isolate Rhizosphere
38 2919476304 Duganella sp. 3397 Isolate Unclassified
39 2928496128 Stenotrophomonas indicatrix 1163 Isolate Unclassified
40 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
41 2931380184 Stenotrophomonas sp. DR822 Isolate Rhizosphere
42 2937610967 Stenotrophomonas maltophilia EP20 Isolate Unclassified
43 2939626828 Stenotrophomonas sp. 2694 Isolate Rhizosphere
44 2941479691
45 2961047084 Stenotrophomonas maltophilia EP5 Isolate Unclassified
46 2961064222 Stenotrophomonas maltophilia EP13 Isolate Unclassified
47 2989771324 Rhizobium rhizolycopersici DBTS2 Isolate Rhizosphere
48 2998344455 Vogesella urethralis SLBN-145 Isolate Rhizosphere
49 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
50 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
51 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
52 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
53 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
54 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
55 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
56 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
57 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
58 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
59 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
60 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
61 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
62 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
63 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
64 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
65 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
66 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
67 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
69 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
71 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
75 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
76 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
77 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
78 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
79 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
80 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
81 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
82 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
83 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
84 3300042139 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0727L_E14_072516_1442 Metagenome Rhizosphere
85 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
86 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
87 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
88 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
89 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
90 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
91 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
92 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
93 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
94 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
95 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
96 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
97 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
98 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
99 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
100 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
101 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
102 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
103 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
104 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
105 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
106 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
107 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
108 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
109 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
110 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
111 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
112 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
113 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
114 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
115 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
116 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
117 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
118 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
119 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
120 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
121 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
122 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
123 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
126 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
128 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
129 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
130 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
131 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
132 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
133 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
134 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
135 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
136 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
137 8001845381 Ancylobacter sonchi VKM B-3145 Isolate Unclassified
138 8002392321 Alcaligenes faecalis Mc250 Isolate Rhizosphere
139 8048746797 Alcaligenes endophyticus DSM 100498 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 71.51
Metatranscriptomes 0
Isolates 28.49

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.32
Nodule 6.15
Rhizoplane 1.68
Rhizosphere 40.78
Stem 0
Stem Tuber 0
Unclassified 34.08

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000277 3300003187 Bacteria 59086
2 Ga0055524_1001102 3300003775 Bacteria 16375
3 Ga0055536_1001931 3300003781 Bacteria 11990
4 Ga0058692_1000022 3300003856 Bacteria 237321
5 Ga0065704_10009332 3300005289 Bacteria 2328
6 Ga0070670_100003737 3300005331 Bacteria 12677
7 Ga0070668_100052037 3300005347 Bacteria 3157
8 Ga0075364_10000682 3300006051 Bacteria 17690
9 Ga0075364_10002368 3300006051 Bacteria 10585
10 Ga0075364_10004953 3300006051 Bacteria 7718
11 Ga0075364_10007054 3300006051 Bacteria 6643
12 Ga0075364_10010832 3300006051 Bacteria 5521
13 Ga0075364_10010944 3300006051 Bacteria 5499
14 Ga0075364_10028324 3300006051 Bacteria 3585
15 Ga0075364_10035164 3300006051 Bacteria 3237
16 Ga0075369_10011653 3300006186 Bacteria 3461
17 Ga0079104_1000032 3300006946 Bacteria 203094
18 Ga0079104_1004002 3300006946 Bacteria 6539
19 Ga0105251_10005888 3300009011 Bacteria 7927
20 Ga0105244_10013397 3300009036 Bacteria 4797
21 Ga0105244_10072851 3300009036 Bacteria 1710
22 Ga0157373_10083626 3300013100 Bacteria 2250
23 Ga0157370_10097397 3300013104 Bacteria 2759
24 Ga0157369_10055166 3300013105 Bacteria 4290
25 Ga0182006_1000008 3300015261 Bacteria 449652
26 Ga0182005_1000022 3300015265 Bacteria 266181
27 Ga0163161_10006273 3300017792 Bacteria 8231
28 Ga0209676_1000225 3300025292 Bacteria 124018
29 Ga0209025_1000003 3300025294 Bacteria 1366495
30 Ga0209025_1002358 3300025294 Bacteria 20289
31 Ga0209050_1002125 3300025298 Bacteria 18054
32 Ga0209050_1003822 3300025298 Bacteria 10744
33 Ga0209256_1000122 3300025299 Bacteria 166746
34 Ga0207655_1026028 3300025728 Bacteria 2820
35 Ga0207650_10020783 3300025925 Bacteria 4635
36 Ga0207668_10010028 3300025972 Bacteria 5703
37 Ga0209281_1000053 3300027111 Bacteria 309587
38 Ga0209281_1009215 3300027111 Bacteria 2332
39 Ga0209371_1000004 3300027312 Bacteria 1098197
40 Ga0268256_1000005 3300030500 Bacteria 1082342
41 Ga0268256_1015925 3300030500 Bacteria 2174
42 Ga0307513_10234402 3300031456 Bacteria 1646
43 Ga0307406_10020824 3300031901 Bacteria 3869
44 Ga0307412_10000190 3300031911 Bacteria 42868
45 Ga0307412_10003704 3300031911 Bacteria 8486
46 Ga0307409_100049011 3300031995 Bacteria 3218
47 Ga0307414_10009444 3300032004 Bacteria 5604
48 Ga0395900_0031025 3300037418 Bacteria 5490
49 Ga0451793_1779509 3300041452 Bacteria 5701
50 Ga0450904_000907 3300042139 Bacteria 4790
51 Ga0495627_000001 3300046453 Bacteria 1104709
52 Ga0495629_0013132 3300046459 Bacteria 5982
53 Ga0495638_0000038 3300046460 Bacteria 249534
54 Ga0495651_0094375 3300046462 Bacteria 2239
55 Ga0495650_0000001 3300046471 Bacteria 1085492
56 Ga0495662_0013825 3300046476 Bacteria 3928
57 Ga0495607_0000071 3300046501 Bacteria 100353
58 Ga0495606_0002036 3300046507 Bacteria 24770
59 Ga0495610_0007721 3300046512 Bacteria 7099
60 Ga0495632_0004212 3300046519 Bacteria 9831
61 Ga0495643_0000307 3300046522 Bacteria 67608
62 Ga0495643_0009689 3300046522 Bacteria 5963
63 Ga0495663_0000675 3300046525 Bacteria 11751
64 Ga0495652_0121880 3300046529 Bacteria 2078
65 Ga0495587_0028761 3300046536 Bacteria 3378
66 Ga0495609_0000721 3300046538 Bacteria 25156
67 Ga0495622_0014642 3300046557 Bacteria 3643
68 Ga0495633_0000866 3300046558 Bacteria 26260
69 Ga0495625_0081256 3300046660 Bacteria 2256
70 Ga0495624_0043345 3300046690 Bacteria 2871
71 Ga0495671_0013788 3300046692 Bacteria 4364
72 Ga0495649_0003046 3300046694 Bacteria 11498
73 Ga0495660_0000159 3300046810 Bacteria 73231
74 Ga0495660_0000775 3300046810 Bacteria 23936
75 Ga0495604_0066702 3300047317 Bacteria 2736
76 Ga0495672_0000006 3300047320 Bacteria 589807
77 Ga0495673_0000008 3300047469 Bacteria 752462
78 Ga0495686_0001402 3300047472 Bacteria 26629
79 Ga0495686_0021684 3300047472 Bacteria 4260
80 Ga0496116_0000494 3300048919 Bacteria 54190
81 Ga0496116_0000545 3300048919 Bacteria 50407
82 Ga0496116_0022436 3300048919 Bacteria 4729
83 Ga0496117_0023485 3300048920 Bacteria 4911
84 Ga0496118_0010497 3300048921 Bacteria 9168
85 Ga0496118_0014957 3300048921 Bacteria 7219
86 Ga0496119_0052301 3300048922 Bacteria 2502
87 Ga0496120_0014138 3300048923 Bacteria 5329
88 Ga0496121_0000005 3300048924 Bacteria 1034486
89 Ga0496121_0001404 3300048924 Bacteria 40784
90 Ga0496121_0005111 3300048924 Bacteria 17098
91 Ga0496121_0014100 3300048924 Bacteria 8521
92 Ga0496121_0023849 3300048924 Bacteria 5872
93 Ga0496121_0036479 3300048924 Bacteria 4381
94 Ga0496121_0062561 3300048924 Bacteria 3047
95 Ga0496122_0000029 3300048925 Bacteria 336396
96 Ga0496123_0000531 3300048926 Bacteria 65624
97 Ga0496123_0026381 3300048926 Bacteria 4352
98 Ga0496124_0000133 3300048927 Bacteria 154328
99 Ga0496124_0045826 3300048927 Bacteria 3748
100 Ga0496124_0069468 3300048927 Bacteria 2924
101 Ga0496125_0000107 3300048928 Bacteria 197483
102 Ga0496125_0000244 3300048928 Bacteria 111663
103 Ga0496125_0008752 3300048928 Bacteria 10528
104 Ga0496125_0009846 3300048928 Bacteria 9729
105 Ga0496125_0065828 3300048928 Bacteria 2867
106 Ga0496126_0118746 3300048929 Bacteria 2295
107 Ga0495678_000002 3300049459 Bacteria 999613
108 Ga0495678_007895 3300049459 Bacteria 5458
109 Ga0501034_0041178 3300049571 Bacteria 4674
110 Ga0501047_0003174 3300049581 Bacteria 15578
111 Ga0501269_000018 3300049766 Bacteria 56999
112 Ga0501035_0115483 3300049822 Bacteria 2349
113 Ga0501044_0017285 3300049823 Bacteria 7737
114 nmdc:mga00v17_1246_c1 3300050491 Bacteria 13329
115 nmdc:mga00v17_35949_c1 3300050491 Bacteria 2951
116 nmdc:mga00v17_488_c1 3300050491 Bacteria 22242
117 nmdc:mga00v17_5312_c1 3300050491 Bacteria 6784
118 nmdc:mga00v17_53489_c1 3300050491 Bacteria 2461
119 nmdc:mga00v17_81164_c1 3300050491 Bacteria 2025
120 nmdc:mga00v17_98_c1 3300050491 Bacteria 51241
121 Ga0495601_0037413 3300053077 Bacteria 3034
122 Ga0495619_0084444 3300053085 Bacteria 2143
123 Ga0500568_0001656 3300053139 Bacteria 13974
124 Ga0500573_0003712 3300053140 Bacteria 7943
125 Ga0500590_009131 3300053148 Bacteria 4978
126 Ga0500633_0004679 3300053160 Bacteria 3171
127 Ga0500634_0041036 3300053161 Bacteria 2513
128 Ga0500636_0000013 3300053177 Bacteria 130122

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049822 Ga0501035_0115483 Ga0501035_0115483_672_1973 420
2 iso_pu_bacteria 2895511927 2895515022 469
3 3300046512 Ga0495610_0007721 Ga0495610_0007721_4284_5843 472
4 3300009036 Ga0105244_10013397 Ga0105244_100133973 478
5 3300025728 Ga0207655_1026028 Ga0207655_10260282 478
6 3300046660 Ga0495625_0081256 Ga0495625_0081256_137_1696 478
7 3300049766 Ga0501269_000018 Ga0501269_000018_17140_18699 478
8 3300046453 Ga0495627_000001 Ga0495627_000001_350431_351981 480
9 3300046522 Ga0495643_0009689 Ga0495643_0009689_3993_5543 480
10 3300046538 Ga0495609_0000721 Ga0495609_0000721_16733_18283 480
11 3300046810 Ga0495660_0000159 Ga0495660_0000159_5144_6694 480
12 3300046810 Ga0495660_0000775 Ga0495660_0000775_5499_7049 480
13 3300048927 Ga0496124_0045826 Ga0496124_0045826_736_2286 480
14 3300049459 Ga0495678_000002 Ga0495678_000002_193419_194969 480
15 3300046471 Ga0495650_0000001 Ga0495650_0000001_293623_295185 481
16 3300046692 Ga0495671_0013788 Ga0495671_0013788_439_2004 482
17 3300046694 Ga0495649_0003046 Ga0495649_0003046_2733_4298 482
18 3300006946 Ga0079104_1004002 Ga0079104_10040022 483
19 3300015261 Ga0182006_1000008 Ga0182006_1000008159 483
20 3300015265 Ga0182005_1000022 Ga0182005_1000022181 483
21 3300027111 Ga0209281_1009215 Ga0209281_10092152 483
22 3300047469 Ga0495673_0000008 Ga0495673_0000008_444166_445734 485
23 3300048927 Ga0496124_0000133 Ga0496124_0000133_120337_121917 486
24 3300049459 Ga0495678_007895 Ga0495678_007895_870_2423 486
25 3300042139 Ga0450904_000907 Ga0450904_000907_2068_3675 488
26 3300048928 Ga0496125_0009846 Ga0496125_0009846_7228_8733 489
27 3300049571 Ga0501034_0041178 Ga0501034_0041178_2983_4572 490
28 3300049581 Ga0501047_0003174 Ga0501047_0003174_7675_9264 490
29 3300049823 Ga0501044_0017285 Ga0501044_0017285_1795_3384 490
30 3300003775 Ga0055524_1001102 Ga0055524_10011028 494
31 3300025299 Ga0209256_1000122 Ga0209256_10001229 494
32 iso_pu_bacteria 2874220319 2874220737 496
33 iso_pu_bacteria 2919089067 2919090766 496
34 iso_pu_bacteria 2928496128 2928496751 496
35 iso_pu_bacteria 2931380184 2931381630 496
36 3300005331 Ga0070670_100003737 Ga0070670_10000373711 497
37 3300025925 Ga0207650_10020783 Ga0207650_100207833 497
38 iso_pu_bacteria 2919134579 2919134609 497
39 3300031995 Ga0307409_100049011 Ga0307409_1000490112 499
40 3300047472 Ga0495686_0001402 Ga0495686_0001402_3071_4630 499
41 3300013104 Ga0157370_10097397 Ga0157370_100973972 500
42 3300013105 Ga0157369_10055166 Ga0157369_100551662 500
43 3300046525 Ga0495663_0000675 Ga0495663_0000675_3050_4558 500
44 3300048919 Ga0496116_0000545 Ga0496116_0000545_25049_26557 500
45 3300048921 Ga0496118_0014957 Ga0496118_0014957_119_1627 500
46 3300048924 Ga0496121_0036479 Ga0496121_0036479_2845_4353 500
47 3300048928 Ga0496125_0008752 Ga0496125_0008752_8083_9591 500
48 iso_pu_bacteria 2857553236 2857555219 500
49 iso_pu_bacteria 2919476304 2919477565 500
50 3300009036 Ga0105244_10072851 Ga0105244_100728511 501
51 3300053140 Ga0500573_0003712 Ga0500573_0003712_3409_4980 502
52 3300053161 Ga0500634_0041036 Ga0500634_0041036_290_1855 505
53 3300053177 Ga0500636_0000013 Ga0500636_0000013_93080_94660 505
54 iso_pu_bacteria 2747842428 2747949552 505
55 3300006051 Ga0075364_10002368 Ga0075364_100023683 506
56 3300048924 Ga0496121_0000005 Ga0496121_0000005_299575_301152 506
57 3300048927 Ga0496124_0069468 Ga0496124_0069468_923_2500 506
58 3300048928 Ga0496125_0000107 Ga0496125_0000107_6877_8454 506
59 3300050491 nmdc:mga00v17_1246_c1 nmdc:mga00v17_1246_c1_3773_5350 506
60 iso_pu_bacteria 2765235840 2765578079 506
61 iso_pu_bacteria 2937610967 2937611579 506
62 iso_pu_bacteria 2939626828 2939627502 506
63 iso_pu_bacteria 2961047084 2961047502 506
64 iso_pu_bacteria 2961064222 2961068285 506
65 3300031456 Ga0307513_10234402 Ga0307513_102344021 507
66 3300046459 Ga0495629_0013132 Ga0495629_0013132_659_2218 507
67 3300046462 Ga0495651_0094375 Ga0495651_0094375_379_1938 507
68 3300046476 Ga0495662_0013825 Ga0495662_0013825_1906_3465 507
69 3300046507 Ga0495606_0002036 Ga0495606_0002036_14457_16016 507
70 3300046519 Ga0495632_0004212 Ga0495632_0004212_5787_7346 507
71 3300046529 Ga0495652_0121880 Ga0495652_0121880_11_1570 507
72 3300046536 Ga0495587_0028761 Ga0495587_0028761_787_2346 507
73 3300046557 Ga0495622_0014642 Ga0495622_0014642_1854_3413 507
74 3300046690 Ga0495624_0043345 Ga0495624_0043345_596_2155 507
75 3300047317 Ga0495604_0066702 Ga0495604_0066702_1167_2726 507
76 3300047472 Ga0495686_0021684 Ga0495686_0021684_1941_3500 507
77 3300053077 Ga0495601_0037413 Ga0495601_0037413_584_2143 507
78 3300053085 Ga0495619_0084444 Ga0495619_0084444_551_2110 507
79 3300053148 Ga0500590_009131 Ga0500590_009131_1727_3286 507
80 iso_pu_bacteria 2547132130 2547500763 507
81 iso_pu_bacteria 2816332141 2816516146 507
82 iso_pu_bacteria 2842391507 2842393666 507
83 3300009011 Ga0105251_10005888 Ga0105251_100058886 508
84 iso_pu_bacteria 2643221733 2644731487 508
85 3300041452 Ga0451793_1779509 Ga0451793_1779509_2369_3919 509
86 3300046460 Ga0495638_0000038 Ga0495638_0000038_210616_212166 509
87 3300046522 Ga0495643_0000307 Ga0495643_0000307_8521_10056 509
88 3300046558 Ga0495633_0000866 Ga0495633_0000866_12574_14109 509
89 3300047320 Ga0495672_0000006 Ga0495672_0000006_38222_39757 509
90 3300003781 Ga0055536_1001931 Ga0055536_10019319 510
91 3300003856 Ga0058692_1000022 Ga0058692_1000022168 510
92 3300005289 Ga0065704_10009332 Ga0065704_100093323 510
93 3300005347 Ga0070668_100052037 Ga0070668_1000520374 510
94 3300017792 Ga0163161_10006273 Ga0163161_100062734 510
95 3300025292 Ga0209676_1000225 Ga0209676_100022521 510
96 3300025298 Ga0209050_1003822 Ga0209050_100382210 510
97 3300025972 Ga0207668_10010028 Ga0207668_100100288 510
98 3300027312 Ga0209371_1000004 Ga0209371_1000004761 510
99 3300030500 Ga0268256_1000005 Ga0268256_1000005286 510
100 3300031911 Ga0307412_10000190 Ga0307412_1000019026 510
101 3300032004 Ga0307414_10009444 Ga0307414_100094446 510
102 iso_pu_bacteria 2842775625 2842777163 510
103 3300006186 Ga0075369_10011653 Ga0075369_100116534 511
104 iso_pu_bacteria 2513237087 2513591928 511
105 iso_pu_bacteria 2524023250 2524612282 512
106 iso_pu_bacteria 2989771324 2989774929 512
107 iso_pu_bacteria 2643221643 2644242662 513
108 iso_pu_bacteria 2821123053 2821124403 513
109 iso_pu_bacteria 2857531043 2857531983 513
110 iso_pu_bacteria 2998344455 2998347031 513
111 3300013100 Ga0157373_10083626 Ga0157373_100836261 514
112 3300006051 Ga0075364_10010832 Ga0075364_100108324 515
113 3300006051 Ga0075364_10028324 Ga0075364_100283243 515
114 3300006946 Ga0079104_1000032 Ga0079104_1000032211 515
115 3300027111 Ga0209281_1000053 Ga0209281_1000053314 515
116 3300046501 Ga0495607_0000071 Ga0495607_0000071_95901_97493 515
117 3300050491 nmdc:mga00v17_5312_c1 nmdc:mga00v17_5312_c1_1089_2639 515
118 3300050491 nmdc:mga00v17_81164_c1 nmdc:mga00v17_81164_c1_51_1631 515
119 3300053139 Ga0500568_0001656 Ga0500568_0001656_3144_4703 515
120 3300053160 Ga0500633_0004679 Ga0500633_0004679_266_1825 515
121 3300031901 Ga0307406_10020824 Ga0307406_100208242 516
122 3300025294 Ga0209025_1002358 Ga0209025_100235813 517
123 iso_pu_bacteria 2919450847 2919453342 517
124 3300048919 Ga0496116_0000494 Ga0496116_0000494_33377_34945 518
125 iso_pu_bacteria 2929138655 2929142401 518
126 iso_pu_bacteria 8001845381 8001850838 518
127 3300006051 Ga0075364_10000682 Ga0075364_1000068214 519
128 iso_pu_bacteria 2643221610 2644068455 519
129 iso_pu_bacteria 2643221675 2644419381 519
130 iso_pu_bacteria 2643221680 2644452738 519
131 iso_pu_bacteria 2643221726 2644691511 519
132 3300006051 Ga0075364_10010944 Ga0075364_100109445 520
133 3300048924 Ga0496121_0014100 Ga0496121_0014100_5583_7235 520
134 3300050491 nmdc:mga00v17_35949_c1 nmdc:mga00v17_35949_c1_729_2303 520
135 iso_pu_bacteria 2838736955 2838741104 520
136 iso_pu_bacteria 2841840854 2841844999 520
137 iso_pu_bacteria 2842140634 2842144721 520
138 iso_pu_bacteria 2857576091 2857578534 520
139 3300048924 Ga0496121_0005111 Ga0496121_0005111_5813_7393 521
140 iso_pu_bacteria 2858950400 2858953550 521
141 iso_pu_bacteria 8048746797 8048749011 521
142 3300050491 nmdc:mga00v17_98_c1 nmdc:mga00v17_98_c1_8210_9793 522
143 iso_pu_bacteria 2599185236 2599722137 522
144 iso_pu_bacteria 2599185292 2599906595 522
145 iso_pu_bacteria 2643221569 2643860800 522
146 iso_pu_bacteria 2643221594 2643981358 522
147 iso_pu_bacteria 2643221621 2644119438 522
148 iso_pu_bacteria 2808606395 2809035275 522
149 iso_pu_bacteria 2857537821 2857542262 522
150 iso_pu_bacteria 2941479691 2941484679 522
151 iso_pu_bacteria 8002392321 8002393295 523
152 3300030500 Ga0268256_1015925 Ga0268256_10159251 525
153 3300048920 Ga0496117_0023485 Ga0496117_0023485_2274_3857 525
154 3300048921 Ga0496118_0010497 Ga0496118_0010497_938_2521 525
155 iso_pu_bacteria 2855730933 2855731025 525
156 iso_pu_bacteria 2855767633 2855770374 525
157 iso_pu_bacteria 2881412998 2881414581 525
158 3300006051 Ga0075364_10004953 Ga0075364_100049536 526
159 3300006051 Ga0075364_10007054 Ga0075364_100070546 526
160 3300006051 Ga0075364_10035164 Ga0075364_100351643 526
161 3300025298 Ga0209050_1002125 Ga0209050_10021258 526
162 3300031911 Ga0307412_10003704 Ga0307412_100037045 526
163 3300048919 Ga0496116_0022436 Ga0496116_0022436_1557_3143 526
164 3300048922 Ga0496119_0052301 Ga0496119_0052301_266_1852 526
165 3300048923 Ga0496120_0014138 Ga0496120_0014138_2669_4255 526
166 3300048924 Ga0496121_0001404 Ga0496121_0001404_9277_10863 526
167 3300048924 Ga0496121_0062561 Ga0496121_0062561_826_2412 526
168 3300048925 Ga0496122_0000029 Ga0496122_0000029_50095_51681 526
169 3300048926 Ga0496123_0000531 Ga0496123_0000531_13944_15530 526
170 3300048926 Ga0496123_0026381 Ga0496123_0026381_2247_3833 526
171 3300048928 Ga0496125_0000244 Ga0496125_0000244_41994_43580 526
172 3300048928 Ga0496125_0065828 Ga0496125_0065828_698_2284 526
173 3300048929 Ga0496126_0118746 Ga0496126_0118746_581_2167 526
174 3300050491 nmdc:mga00v17_488_c1 nmdc:mga00v17_488_c1_12425_14014 526
175 3300050491 nmdc:mga00v17_53489_c1 nmdc:mga00v17_53489_c1_343_1932 526
176 3300037418 Ga0395900_0031025 Ga0395900_0031025_1174_2757 527
177 3300003187 JGI25151J46595_10000277 JGI25151J46595_1000027749 529
178 3300025294 Ga0209025_1000003 Ga0209025_1000003182 529
179 3300048924 Ga0496121_0023849 Ga0496121_0023849_3877_5466 529

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03741

TerC

Integral membrane protein TerC family

41

231

0.97

PF03471

CorC_HlyC

Transporter associated domain

461

541

0.9

PF00571

CBS

CBS domain

394

448

0.89

Feature Viewer

pLDDT pTM Quality
77.06 0.42 Low
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Predicted Structure (AlphaFold2)

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