F274290

General Info

Members Datasets Scaffolds Average Seq Length
179 120 358 201

Family's Representative Sequence

Representative Sequence 3300045051|Ga0451576_0080500|Ga0451576_0080500_1161_1838
Length 225
Sequence MKTNQMTDRNNKRNTKPGMGARRLGALLALAAVALTGTASAAPMTFNFKDPKGVNNAVFKLDAPLEAINGSASGVSGTVTFDPANPGATQGKIVVEAKSLHVPNPLMKEHLHGDQWLNVAKHGEITFEAKSLKNVKTAGDSTTADAVGVLTIKGVSKDVTVPVKLTYLKDKLAARTGGQMQGDLLVIRSNFSIQRADFEINPKAPADKVAETIDLTLSIAGASPR

Samples

Sample ID Description Type Environment
1 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
5 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
10 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
11 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
12 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
13 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
14 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
15 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
16 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
17 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
18 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
19 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
20 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
21 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
22 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
23 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
24 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
25 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
26 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
27 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
28 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
29 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
30 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
31 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
32 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
33 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
34 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
35 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
39 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
40 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
41 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
42 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
43 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
46 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
62 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
63 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
64 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
65 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
66 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
67 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
68 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
69 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
70 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
71 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
72 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
73 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
74 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
75 3300034957 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_2 Metagenome Rhizosphere
76 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
77 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
78 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
79 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
80 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
81 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
82 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
83 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
84 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
85 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
86 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
87 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
88 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
89 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
90 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
91 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
92 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
93 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
94 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
95 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
96 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
97 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
98 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
99 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
100 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
101 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
102 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
103 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
104 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
105 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
106 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
107 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
108 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
109 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
110 3300049528 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
111 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
114 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
116 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
117 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
118 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
119 3300059645 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 18R_SW_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
120 2786546548 Spartobacteria bacterium LR76 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.32
Metatranscriptomes 1.12
Isolates 0.56

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.56
Nodule 0
Rhizoplane 0
Rhizosphere 97.21
Stem 0
Stem Tuber 0
Unclassified 28.49

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451576_0080500 3300045051 Bacteria 3389
2 rootH2_10027074 3300003320 Bacteria 6700
3 rootH1_10312978 3300003323 Unclassified 1132
4 Ga0065704_10004665 3300005289 Viruses 3252
5 Ga0065707_10395913 3300005295 Unclassified 859
6 Ga0070658_10050782 3300005327 Unclassified 3362
7 Ga0070683_100451062 3300005329 Unclassified 1227
8 Ga0070670_100877528 3300005331 Bacteria 812
9 Ga0070680_100570065 3300005336 Unclassified 971
10 Ga0070660_100123056 3300005339 Unclassified 2071
11 Ga0070689_100083529 3300005340 Bacteria 2510
12 Ga0070689_100421430 3300005340 Unclassified 1131
13 Ga0070692_10588504 3300005345 Unclassified 734
14 Ga0070668_100252862 3300005347 Bacteria 1463
15 Ga0070668_101011410 3300005347 Unclassified 747
16 Ga0070688_100457585 3300005365 Bacteria 955
17 Ga0070714_100024360 3300005435 Bacteria 4983
18 Ga0070714_100128307 3300005435 Bacteria 2264
19 Ga0070701_10130660 3300005438 Unclassified 1426
20 Ga0070711_100002325 3300005439 Bacteria 10806
21 Ga0070700_100539196 3300005441 Bacteria 904
22 Ga0070681_10096771 3300005458 Bacteria 2900
23 Ga0070681_10195372 3300005458 Unclassified 1942
24 Ga0070681_10755346 3300005458 Unclassified 889
25 Ga0070685_10295137 3300005466 Bacteria 1090
26 Ga0070685_10621792 3300005466 Unclassified 779
27 Ga0070707_100108738 3300005468 Bacteria 2689
28 Ga0070679_100148384 3300005530 Unclassified 2322
29 Ga0070684_100570068 3300005535 Unclassified 1051
30 Ga0070686_100002103 3300005544 Bacteria 10980
31 Ga0070693_100251094 3300005547 Bacteria 1172
32 Ga0070704_100033673 3300005549 Bacteria 3466
33 Ga0068855_100393829 3300005563 Unclassified 1519
34 Ga0068855_100434763 3300005563 Unclassified 1434
35 Ga0068854_100741470 3300005578 Bacteria 851
36 Ga0068856_100179468 3300005614 Bacteria 2130
37 Ga0068859_100718176 3300005617 Unclassified 1089
38 Ga0068863_100367530 3300005841 Unclassified 1403
39 Ga0068863_100902317 3300005841 Unclassified 884
40 Ga0068858_100177499 3300005842 Bacteria 2010
41 Ga0075431_100864755 3300006847 Bacteria 875
42 Ga0097620_100718158 3300006931 Unclassified 1089
43 Ga0075435_100170444 3300007076 Bacteria 1836
44 Ga0105240_10059227 3300009093 Bacteria 4780
45 Ga0105240_10351995 3300009093 Unclassified 1671
46 Ga0105240_10425749 3300009093 Bacteria 1490
47 Ga0105240_10511810 3300009093 Unclassified 1333
48 Ga0111539_11062430 3300009094 Bacteria 941
49 Ga0105241_10057365 3300009174 Bacteria 2987
50 Ga0105238_10090486 3300009551 Bacteria 3047
51 Ga0105238_10101881 3300009551 Bacteria 2853
52 Ga0105238_10248147 3300009551 Bacteria 1758
53 Ga0105249_10141989 3300009553 Bacteria 2304
54 Ga0157374_10041525 3300013296 Unclassified 4240
55 Ga0157378_10147767 3300013297 Bacteria 2187
56 Ga0157378_10248449 3300013297 Unclassified 1702
57 Ga0163162_10458884 3300013306 Bacteria 1406
58 Ga0157372_10402574 3300013307 Unclassified 1595
59 Ga0157372_10639098 3300013307 Unclassified 1239
60 Ga0157375_10392349 3300013308 Bacteria 1555
61 Ga0157375_10583472 3300013308 Bacteria 1278
62 Ga0207705_10230277 3300025909 Unclassified 1409
63 Ga0207695_10310767 3300025913 Bacteria 1466
64 Ga0207660_10512751 3300025917 Unclassified 973
65 Ga0207652_10871665 3300025921 Unclassified 796
66 Ga0207646_10135751 3300025922 Bacteria 2215
67 Ga0207694_10087028 3300025924 Bacteria 2461
68 Ga0207694_10126775 3300025924 Bacteria 2043
69 Ga0207664_10048021 3300025929 Unclassified 3356
70 Ga0207670_10216897 3300025936 Bacteria 1462
71 Ga0207667_10048480 3300025949 Bacteria 4491
72 Ga0207667_10053250 3300025949 Bacteria 4259
73 Ga0207651_11071091 3300025960 Unclassified 722
74 Ga0207712_10269564 3300025961 Bacteria 1384
75 Ga0207668_10148447 3300025972 Bacteria 1812
76 Ga0207703_10156096 3300026035 Bacteria 1994
77 Ga0207702_10003246 3300026078 Bacteria 15023
78 Ga0207702_10031773 3300026078 Bacteria 4402
79 Ga0207641_10494543 3300026088 Bacteria 1187
80 Ga0265337_1000557 3300028556 Bacteria 19622
81 Ga0265337_1002357 3300028556 Bacteria 8718
82 Ga0265337_1006231 3300028556 Bacteria 4631
83 Ga0265326_10025571 3300028558 Bacteria 1684
84 Ga0265319_1022716 3300028563 Bacteria 2281
85 Ga0265334_10036879 3300028573 Bacteria 1929
86 Ga0265323_10000410 3300028653 Bacteria 24573
87 Ga0265336_10000520 3300028666 Bacteria 22239
88 Ga0265336_10024955 3300028666 Bacteria 1885
89 Ga0265338_10000008 3300028800 Bacteria 481542
90 Ga0265338_10000210 3300028800 Bacteria 107885
91 Ga0265338_10000269 3300028800 Bacteria 95081
92 Ga0265338_10000652 3300028800 Bacteria 59926
93 Ga0265338_10000774 3300028800 Bacteria 54489
94 Ga0265338_10001246 3300028800 Bacteria 41955
95 Ga0265338_10003174 3300028800 Bacteria 23452
96 Ga0265338_10014267 3300028800 Bacteria 8858
97 Ga0265338_10032168 3300028800 Bacteria 5124
98 Ga0265338_10033987 3300028800 Bacteria 4938
99 Ga0265338_10046022 3300028800 Bacteria 4004
100 Ga0265338_10048137 3300028800 Bacteria 3883
101 Ga0265338_10058119 3300028800 Bacteria 3417
102 Ga0265338_10098691 3300028800 Bacteria 2389
103 Ga0265338_10229919 3300028800 Bacteria 1380
104 Ga0265338_10694793 3300028800 Unclassified 702
105 Ga0265324_10000319 3300029957 Bacteria 35387
106 Ga0265324_10000487 3300029957 Bacteria 27736
107 Ga0265324_10036617 3300029957 Unclassified 1706
108 Ga0265320_10000501 3300031240 Bacteria 30510
109 Ga0265320_10000683 3300031240 Bacteria 25874
110 Ga0265320_10067963 3300031240 Unclassified 1685
111 Ga0265329_10142047 3300031242 Bacteria 776
112 Ga0265340_10002562 3300031247 Bacteria 10323
113 Ga0265340_10061610 3300031247 Bacteria 1794
114 Ga0265327_10002598 3300031251 Bacteria 18692
115 Ga0265316_10070835 3300031344 Bacteria 2689
116 Ga0265316_10267616 3300031344 Bacteria 1251
117 Ga0265316_10306257 3300031344 Bacteria 1157
118 Ga0265316_10524964 3300031344 Unclassified 844
119 Ga0265314_10118875 3300031711 Bacteria 1667
120 Ga0373938_0100177 3300034957 Unclassified 727
121 Ga0373928_0002641 3300035084 Bacteria 3473
122 Ga0373929_0001748 3300035085 Bacteria 4084
123 Ga0373944_0000054 3300035089 Bacteria 18574
124 Ga0373951_0004429 3300035091 Bacteria 3338
125 Ga0373932_0000001 3300035112 Bacteria 1459067
126 Ga0373939_0075823 3300035114 Unclassified 1106
127 Ga0373945_0001752 3300035116 Bacteria 6703
128 Ga0373954_0001465 3300035118 Bacteria 9598
129 Ga0373956_0032425 3300035119 Unclassified 2292
130 Ga0373946_0122300 3300035171 Bacteria 1189
131 Ga0373962_0000103 3300035242 Bacteria 18672
132 Ga0373931_0000008 3300035691 Bacteria 362269
133 Ga0373927_0010657 3300035695 Bacteria 6123
134 Ga0373933_0256487 3300035724 Unclassified 1127
135 Ga0373947_0042399 3300035725 Bacteria 2716
136 Ga0373937_0007945 3300036401 Bacteria 9199
137 Ga0373937_0583869 3300036401 Unclassified 1061
138 Ga0373937_0873490 3300036401 Bacteria 848
139 Ga0373925_0000451 3300037068 Bacteria 41493
140 Ga0451577_0000901 3300042876 Bacteria 43941
141 Ga0451577_0002285 3300042876 Bacteria 23202
142 Ga0451577_0293742 3300042876 Bacteria 1473
143 Ga0453684_0011918 3300044712 Bacteria 14475
144 Ga0453684_0220899 3300044712 Bacteria 2195
145 Ga0451576_0037619 3300045051 Bacteria 5126
146 Ga0451576_0039830 3300045051 Bacteria 4975
147 Ga0451576_0048927 3300045051 Unclassified 4438
148 Ga0451576_0106264 3300045051 Bacteria 2921
149 Ga0451576_0327188 3300045051 Unclassified 1604
150 Ga0451576_0352413 3300045051 Bacteria 1541
151 Ga0451576_0797544 3300045051 Unclassified 992
152 Ga0495629_0036372 3300046459 Bacteria 3476
153 Ga0495618_0066603 3300046514 Bacteria 2289
154 Ga0495630_0259418 3300046517 Bacteria 1328
155 Ga0495630_1034786 3300046517 Unclassified 624
156 Ga0495586_0002170 3300046535 Bacteria 10672
157 Ga0495586_0149900 3300046535 Bacteria 1312
158 Ga0495587_0448534 3300046536 Unclassified 715
159 Ga0495622_0077784 3300046557 Bacteria 1528
160 Ga0495634_0001299 3300046642 Bacteria 22825
161 Ga0495635_0245627 3300046663 Bacteria 1207
162 Ga0495613_0003308 3300046689 Bacteria 12067
163 Ga0495674_0234251 3300047319 Bacteria 1515
164 Ga0495676_0675853 3300047321 Unclassified 669
165 Ga0495680_0044952 3300047322 Bacteria 3489
166 Ga0495675_0137279 3300047444 Unclassified 1517
167 Ga0495684_0078713 3300047471 Bacteria 2502
168 Ga0496121_0166500 3300048924 Unclassified 1606
169 Ga0501312_036131 3300049528 Bacteria 792
170 Ga0501034_0042054 3300049571 Bacteria 4625
171 Ga0501036_0053835 3300049572 Bacteria 3407
172 Ga0501080_0016162 3300049742 Bacteria 6890
173 Ga0501035_0060413 3300049822 Bacteria 3374
174 Ga0501044_0173236 3300049823 Bacteria 2128
175 nmdc:mga06r32_349455_c1 3300050510 Bacteria 1463
176 nmdc:mga08y16_1409631_c1 3300050511 Unclassified 660
177 Ga0500556_0006890 3300053104 Bacteria 3234
178 Ga0587076_043440 3300059645 Unclassified 849
179 2787509526 2786546548 Bacteria 4745694
180 Ga0451576_0080500
181 rootH2_10027074
182 rootH1_10312978
183 Ga0065704_10004665
184 Ga0065707_10395913
185 Ga0070658_10050782
186 Ga0070683_100451062
187 Ga0070670_100877528
188 Ga0070680_100570065
189 Ga0070660_100123056
190 Ga0070689_100083529
191 Ga0070689_100421430
192 Ga0070692_10588504
193 Ga0070668_100252862
194 Ga0070668_101011410
195 Ga0070688_100457585
196 Ga0070714_100024360
197 Ga0070714_100128307
198 Ga0070701_10130660
199 Ga0070711_100002325
200 Ga0070700_100539196
201 Ga0070681_10096771
202 Ga0070681_10195372
203 Ga0070681_10755346
204 Ga0070685_10295137
205 Ga0070685_10621792
206 Ga0070707_100108738
207 Ga0070679_100148384
208 Ga0070684_100570068
209 Ga0070686_100002103
210 Ga0070693_100251094
211 Ga0070704_100033673
212 Ga0068855_100393829
213 Ga0068855_100434763
214 Ga0068854_100741470
215 Ga0068856_100179468
216 Ga0068859_100718176
217 Ga0068863_100367530
218 Ga0068863_100902317
219 Ga0068858_100177499
220 Ga0075431_100864755
221 Ga0097620_100718158
222 Ga0075435_100170444
223 Ga0105240_10059227
224 Ga0105240_10351995
225 Ga0105240_10425749
226 Ga0105240_10511810
227 Ga0111539_11062430
228 Ga0105241_10057365
229 Ga0105238_10090486
230 Ga0105238_10101881
231 Ga0105238_10248147
232 Ga0105249_10141989
233 Ga0157374_10041525
234 Ga0157378_10147767
235 Ga0157378_10248449
236 Ga0163162_10458884
237 Ga0157372_10402574
238 Ga0157372_10639098
239 Ga0157375_10392349
240 Ga0157375_10583472
241 Ga0207705_10230277
242 Ga0207695_10310767
243 Ga0207660_10512751
244 Ga0207652_10871665
245 Ga0207646_10135751
246 Ga0207694_10087028
247 Ga0207694_10126775
248 Ga0207664_10048021
249 Ga0207670_10216897
250 Ga0207667_10048480
251 Ga0207667_10053250
252 Ga0207651_11071091
253 Ga0207712_10269564
254 Ga0207668_10148447
255 Ga0207703_10156096
256 Ga0207702_10003246
257 Ga0207702_10031773
258 Ga0207641_10494543
259 Ga0265337_1000557
260 Ga0265337_1002357
261 Ga0265337_1006231
262 Ga0265326_10025571
263 Ga0265319_1022716
264 Ga0265334_10036879
265 Ga0265323_10000410
266 Ga0265336_10000520
267 Ga0265336_10024955
268 Ga0265338_10000008
269 Ga0265338_10000210
270 Ga0265338_10000269
271 Ga0265338_10000652
272 Ga0265338_10000774
273 Ga0265338_10001246
274 Ga0265338_10003174
275 Ga0265338_10014267
276 Ga0265338_10032168
277 Ga0265338_10033987
278 Ga0265338_10046022
279 Ga0265338_10048137
280 Ga0265338_10058119
281 Ga0265338_10098691
282 Ga0265338_10229919
283 Ga0265338_10694793
284 Ga0265324_10000319
285 Ga0265324_10000487
286 Ga0265324_10036617
287 Ga0265320_10000501
288 Ga0265320_10000683
289 Ga0265320_10067963
290 Ga0265329_10142047
291 Ga0265340_10002562
292 Ga0265340_10061610
293 Ga0265327_10002598
294 Ga0265316_10070835
295 Ga0265316_10267616
296 Ga0265316_10306257
297 Ga0265316_10524964
298 Ga0265314_10118875
299 Ga0373938_0100177
300 Ga0373928_0002641
301 Ga0373929_0001748
302 Ga0373944_0000054
303 Ga0373951_0004429
304 Ga0373932_0000001
305 Ga0373939_0075823
306 Ga0373945_0001752
307 Ga0373954_0001465
308 Ga0373956_0032425
309 Ga0373946_0122300
310 Ga0373962_0000103
311 Ga0373931_0000008
312 Ga0373927_0010657
313 Ga0373933_0256487
314 Ga0373947_0042399
315 Ga0373937_0007945
316 Ga0373937_0583869
317 Ga0373937_0873490
318 Ga0373925_0000451
319 Ga0451577_0000901
320 Ga0451577_0002285
321 Ga0451577_0293742
322 Ga0453684_0011918
323 Ga0453684_0220899
324 Ga0451576_0037619
325 Ga0451576_0039830
326 Ga0451576_0048927
327 Ga0451576_0106264
328 Ga0451576_0327188
329 Ga0451576_0352413
330 Ga0451576_0797544
331 Ga0495629_0036372
332 Ga0495618_0066603
333 Ga0495630_0259418
334 Ga0495630_1034786
335 Ga0495586_0002170
336 Ga0495586_0149900
337 Ga0495587_0448534
338 Ga0495622_0077784
339 Ga0495634_0001299
340 Ga0495635_0245627
341 Ga0495613_0003308
342 Ga0495674_0234251
343 Ga0495676_0675853
344 Ga0495680_0044952
345 Ga0495675_0137279
346 Ga0495684_0078713
347 Ga0496121_0166500
348 Ga0501312_036131
349 Ga0501034_0042054
350 Ga0501036_0053835
351 Ga0501080_0016162
352 Ga0501035_0060413
353 Ga0501044_0173236
354 nmdc:mga06r32_349455_c1
355 nmdc:mga08y16_1409631_c1
356 Ga0500556_0006890
357 Ga0587076_043440
358 2787509526

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04264

YceI

YceI-like domain

36

220

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
7bwl-assembly1.cif.gz_A structure of antibiotic sequester from pseudomonas aerurinosa 0.7911 22 178
1y0g-assembly2.cif.gz_D crystal structure of the escherichia coli ycei protein, structural genomics 0.7845 22 179
1wub-assembly1.cif.gz_A crystal structure of the polyisoprenoid-binding protein, tt1927b, from thermus thermophilus hb8 0.7799 22 180
5w39-assembly1.cif.gz_A crystal structure of mutant cj ycei protein (cj-n182c) with monobromobimane guest structure 0.7795 47 181
5w2d-assembly1.cif.gz_A crystal structure of mutant cj ycei protein (cj-g34c) for nanotechnology applications 0.7786 47 181
ID Description Score Start End Superfamily
af_Q2FUS9_3_167_2.40.128.110 Mainly Beta;Beta Barrel;Lipocalin;Lipid/polyisoprenoid-binding, YceI-like 0.8233 31 176 2.40.128.110
1wubA00 Mainly Beta;Beta Barrel;Lipocalin;Lipid/polyisoprenoid-binding, YceI-like 0.7799 22 180 2.40.128.110
5w2dA01 Mainly Beta;Beta Barrel;Lipocalin;Lipid/polyisoprenoid-binding, YceI-like 0.7786 47 181 2.40.128.110
5ixgA00 Mainly Beta;Beta Barrel;Lipocalin;Lipid/polyisoprenoid-binding, YceI-like 0.7762 19 179 2.40.128.110
af_P0A8X2_23_191_2.40.128.110 Mainly Beta;Beta Barrel;Lipocalin;Lipid/polyisoprenoid-binding, YceI-like 0.7604 19 179 2.40.128.110
ID Description Score Start End GO Terms
AF-A0A2A5E2L3-F1-model_v4 Lipid/polyisoprenoid-binding YceI-like domain-containing protein 0.9235 18 181
AF-A0A3C1VHH3-F1-model_v4 Lipid/polyisoprenoid-binding YceI-like domain-containing protein 0.9067 1 181
AF-A0A432FBK8-F1-model_v4 YceI family protein 0.9035 13 181
AF-A0A1Y0H5J3-F1-model_v4 Lipid/polyisoprenoid-binding YceI-like domain-containing protein 0.9033 19 181
AF-A0A2E8Y5G6-F1-model_v4 Lipid/polyisoprenoid-binding YceI-like domain-containing protein 0.902 1 178

Map