F273805

General Info

Members Datasets Scaffolds Average Seq Length
179 142 147 161

Family's Representative Sequence

Representative Sequence 3300013102|Ga0157371_10007359|Ga0157371_1000735911
Length 180
Sequence MNPEHPKLFNIFERNCMIMKKRELKITYAEFENENELKAADRELLEKARLAADKAYAPYSNFHVGAALLLKNGQIICGNNQENVAYPSGLCAERVAIYAAGAAYPDSAIDTIAVTCKSKAFEVNEPLSPCGACRQAIAEYEMRHKTNIRILLMGEKGTIRMLESISDLLPFMFKAEELKK

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2513020052 Flavobacterium sp. CF136 Isolate Rhizosphere
3 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
4 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
5 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
6 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
7 2643221725 Flavobacterium sp. Root935 Isolate Unclassified
8 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
9 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
10 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
11 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
12 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
13 2802428842 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Isolate Unclassified
14 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
15 2833640130 Mariniflexile sp. TRM1-10 Isolate Rhizosphere
16 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
17 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
18 2881359912 Flavobacterium ustbae T13 Isolate Rhizosphere
19 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
20 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
21 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
22 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
23 2919509842 Flavobacterium arsenatis 3773 Isolate Unclassified
24 2919683626 Flavobacterium piscis 4129 Isolate Unclassified
25 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
26 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
27 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
28 2965320100 Flavobacterium agri MAH-1 Isolate Rhizosphere
29 2977268062 Flavobacterium sp. SORGH_AS 622 Isolate Unclassified
30 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
31 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
32 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
33 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
34 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
35 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
36 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
37 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
38 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
39 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
40 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
41 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
42 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
43 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
44 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
45 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
46 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
47 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
48 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
49 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
50 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
51 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
52 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
53 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
54 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
55 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
56 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
57 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
63 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
64 3300027424 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S PM (SPAdes) (version 2) Metagenome Rhizosphere
65 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
66 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
67 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
68 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
69 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
70 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
71 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
72 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
73 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
74 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
75 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
76 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
77 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
78 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
79 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
80 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
81 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
82 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
83 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
84 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
85 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
86 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
87 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
88 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
89 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
90 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
91 3300041463 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_7 MetaG Metagenome Rhizoplane
92 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
93 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
94 3300041511 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_12 MetaG Metagenome Unclassified
95 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
96 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
97 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
98 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
99 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
100 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
101 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
102 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
103 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
104 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
105 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
106 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
107 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
108 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
109 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
110 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
111 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
112 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
113 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
114 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
115 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
116 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
117 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
118 3300049530 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
119 3300049539 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_B_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
120 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
121 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
123 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
124 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
125 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
126 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
127 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
128 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
129 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
130 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
131 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
132 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
133 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
134 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
135 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
136 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
137 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
138 3300053726 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 endosphere Metagenome Endosphere
139 8054307821 Flavobacterium soyae SCIV07 Isolate Rhizosphere
140 8055419101 Flavobacterium tyrosinilyticum KCTC 42726 Isolate Rhizosphere
141 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere
142 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 80.45
Metatranscriptomes 1.68
Isolates 17.88

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.7
Nodule 3.35
Rhizoplane 1.12
Rhizosphere 70.95
Stem 0
Stem Tuber 0
Unclassified 17.88

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2898011 2162886007 Bacteria 3935
2 rootH1_10189248 3300003316 Unclassified 2042
3 rootL2_10362498 3300003322 Bacteria 1469
4 Ga0006562J51391_1010872 3300003578 Bacteria 9597
5 Ga0065714_10072888 3300005288 Bacteria 3282
6 Ga0065714_10083387 3300005288 Bacteria 2212
7 Ga0065714_10094102 3300005288 Bacteria 1827
8 Ga0065704_10001098 3300005289 Bacteria 9857
9 Ga0070682_100068246 3300005337 Bacteria 2267
10 Ga0070669_100674572 3300005353 Bacteria 871
11 Ga0070688_100738343 3300005365 Bacteria 765
12 Ga0070685_10026057 3300005466 Bacteria 3220
13 Ga0068852_100104304 3300005616 Bacteria 2566
14 Ga0068863_100934704 3300005841 Bacteria 868
15 Ga0099824_1000108 3300006942 Bacteria 66974
16 Ga0079104_1000028 3300006946 Bacteria 208540
17 Ga0099826_10000450 3300006948 Bacteria 19710
18 Ga0105251_10032423 3300009011 Bacteria 2604
19 Ga0105251_10127971 3300009011 Bacteria 1152
20 Ga0105244_10000175 3300009036 Bacteria 65097
21 Ga0105250_10032216 3300009092 Bacteria 2105
22 Ga0105247_11222415 3300009101 Bacteria 599
23 Ga0105242_10102613 3300009176 Bacteria 2426
24 Ga0105242_10117994 3300009176 Unclassified 2272
25 Ga0157373_10000026 3300013100 Bacteria 139930
26 Ga0157371_10006881 3300013102 Bacteria 9284
27 Ga0157371_10007359 3300013102 Bacteria 8922
28 Ga0157370_10003982 3300013104 Bacteria 17177
29 Ga0157370_10023449 3300013104 Bacteria 6125
30 Ga0157370_10024390 3300013104 Bacteria 5991
31 Ga0157370_10051446 3300013104 Bacteria 3935
32 Ga0157370_10105109 3300013104 Bacteria 2643
33 Ga0157370_10134610 3300013104 Bacteria 2304
34 Ga0157369_10026349 3300013105 Bacteria 6449
35 Ga0157372_10001301 3300013307 Bacteria 27001
36 Ga0157375_10042354 3300013308 Bacteria 4407
37 Ga0182006_1003673 3300015261 Bacteria 7779
38 Ga0182006_1103726 3300015261 Bacteria 1006
39 Ga0182006_1201308 3300015261 Bacteria 660
40 Ga0182006_1201309 3300015261 Bacteria 660
41 Ga0163161_10000461 3300017792 Bacteria 33718
42 Ga0163161_11718458 3300017792 Bacteria 556
43 Ga0207655_1000003 3300025728 Bacteria 1081376
44 Ga0207713_1011795 3300025735 Bacteria 4719
45 Ga0207686_10652102 3300025934 Bacteria 833
46 Ga0207641_10892859 3300026088 Bacteria 882
47 Ga0207698_11687567 3300026142 Bacteria 649
48 Ga0209281_1000069 3300027111 Bacteria 279747
49 Ga0209489_103490 3300027361 Bacteria 30535
50 Ga0209984_1044300 3300027424 Bacteria 644
51 Ga0209282_1050208 3300027666 Bacteria 2400
52 Ga0265334_10026905 3300028573 Bacteria 2319
53 Ga0265331_10119205 3300031250 Bacteria 1207
54 Ga0265327_10069298 3300031251 Bacteria 1771
55 Ga0265327_10111586 3300031251 Bacteria 1306
56 Ga0265316_10167274 3300031344 Bacteria 1642
57 Ga0307408_100031485 3300031548 Bacteria 3693
58 Ga0316576_10214679 3300031727 Bacteria 1448
59 Ga0316576_10505781 3300031727 Bacteria 888
60 Ga0316576_10649167 3300031727 Bacteria 768
61 Ga0307405_10000005 3300031731 Bacteria 376536
62 Ga0307405_10011651 3300031731 Bacteria 4623
63 Ga0307413_10000202 3300031824 Bacteria 17416
64 Ga0307413_10027045 3300031824 Bacteria 3172
65 Ga0307410_10001239 3300031852 Bacteria 11333
66 Ga0307406_10000082 3300031901 Bacteria 53076
67 Ga0307406_10005460 3300031901 Bacteria 6958
68 Ga0307409_100981027 3300031995 Bacteria 862
69 Ga0307416_100001958 3300032002 Bacteria 11538
70 Ga0307414_10000108 3300032004 Bacteria 58714
71 Ga0307414_10014735 3300032004 Bacteria 4698
72 Ga0307414_10020965 3300032004 Bacteria 4086
73 Ga0307414_10048170 3300032004 Bacteria 2938
74 Ga0307414_10051902 3300032004 Bacteria 2850
75 Ga0307414_10481497 3300032004 Bacteria 1094
76 Ga0307414_11126410 3300032004 Bacteria 725
77 Ga0307411_10000002 3300032005 Bacteria 534807
78 Ga0307411_10474303 3300032005 Bacteria 1052
79 Ga0307510_10170315 3300033180 Bacteria 1757
80 Ga0373954_0505330 3300035118 Unclassified 599
81 Ga0316574_0036063 3300035398 Bacteria 3026
82 Ga0316574_0155346 3300035398 Bacteria 1474
83 Ga0316582_0535550 3300036647 Bacteria 807
84 Ga0395899_0139501 3300037312 Bacteria 1726
85 Ga0395900_0030177 3300037418 Bacteria 5566
86 Ga0395905_0000011 3300037471 Bacteria 424563
87 Ga0395901_0026627 3300038443 Bacteria 5938
88 Ga0439447_000149 3300041407 Bacteria 24068
89 Ga0439466_0012912 3300041411 Bacteria 3064
90 Ga0439466_0029886 3300041411 Bacteria 1872
91 Ga0451793_0426455 3300041452 Bacteria 711
92 Ga0451804_0551215 3300041463 Bacteria 769
93 Ga0451837_0864967 3300041494 Bacteria 598
94 Ga0451843_1653518 3300041509 Bacteria 617
95 Ga0451855_0218254 3300041511 Bacteria 900
96 Ga0451855_1119531 3300041511 Bacteria 1988
97 Ga0439452_012725 3300042010 Bacteria 2382
98 Ga0453683_0163534 3300044673 Unclassified 1409
99 Ga0453684_0004621 3300044712 Bacteria 28641
100 Ga0453684_0528691 3300044712 Bacteria 1302
101 Ga0453684_1143986 3300044712 Bacteria 820
102 Ga0451576_0000002 3300045051 Bacteria 1670975
103 Ga0495592_0062176 3300046454 Unclassified 2742
104 Ga0495651_0625327 3300046462 Unclassified 677
105 Ga0495664_0100267 3300046477 Unclassified 1744
106 Ga0495610_0071458 3300046512 Bacteria 1618
107 Ga0495654_0096605 3300046530 Bacteria 1365
108 Ga0495654_0198549 3300046530 Bacteria 859
109 Ga0495640_0064925 3300046533 Unclassified 2466
110 Ga0495586_0132902 3300046535 Unclassified 1393
111 Ga0495667_0074846 3300046559 Unclassified 2204
112 Ga0495634_0006928 3300046642 Bacteria 8565
113 Ga0495599_0053085 3300046678 Unclassified 2539
114 Ga0495600_0200060 3300046809 Bacteria 1283
115 Ga0495660_0146869 3300046810 Bacteria 1168
116 Ga0495680_0227938 3300047322 Bacteria 1328
117 Ga0496116_0000002 3300048919 Bacteria 920291
118 Ga0496121_0024231 3300048924 Bacteria 5813
119 Ga0496123_0267725 3300048926 Bacteria 833
120 Ga0496124_0051466 3300048927 Bacteria 3504
121 Ga0496125_0000007 3300048928 Bacteria 715355
122 Ga0496126_0064654 3300048929 Bacteria 3276
123 Ga0496126_0316998 3300048929 Bacteria 1283
124 Ga0501314_000185 3300049530 Bacteria 3359
125 Ga0501323_000301 3300049539 Bacteria 3438
126 Ga0501036_0119237 3300049572 Bacteria 2228
127 Ga0501040_0020557 3300049576 Bacteria 4401
128 Ga0501047_0179795 3300049581 Bacteria 1982
129 Ga0501249_000035 3300049679 Bacteria 66494
130 Ga0501249_013112 3300049679 Bacteria 1758
131 Ga0501241_025339 3300049758 Bacteria 1104
132 Ga0501266_000001 3300049763 Bacteria 562004
133 Ga0501269_000585 3300049766 Bacteria 6665
134 Ga0501280_000107 3300049776 Bacteria 21795
135 Ga0501035_0002368 3300049822 Bacteria 18535
136 nmdc:mga03n38_120073_c1 3300050490 Bacteria 1290
137 Ga0500641_0000046 3300053096 Bacteria 60650
138 Ga0500641_0002446 3300053096 Bacteria 6574
139 Ga0500655_003716 3300053133 Unclassified 2751
140 Ga0500658_0000001 3300053134 Bacteria 592738
141 Ga0500559_0006834 3300053136 Bacteria 5115
142 Ga0500573_0083529 3300053140 Bacteria 1813
143 Ga0500589_124357 3300053147 Bacteria 1087
144 Ga0500604_0017738 3300053151 Bacteria 1975
145 Ga0500622_0000392 3300053156 Bacteria 42200
146 Ga0500622_0000394 3300053156 Bacteria 42087
147 Ga0500584_015323 3300053726 Bacteria 3526

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300031727 Ga0316576_10505781 Ga0316576_105057812 154
2 3300041452 Ga0451793_0426455 Ga0451793_0426455_27_491 154
3 3300053133 Ga0500655_003716 Ga0500655_003716_437_901 154
4 3300053151 Ga0500604_0017738 Ga0500604_0017738_1490_1957 154
5 3300053156 Ga0500622_0000392 Ga0500622_0000392_39380_39844 154
6 3300053156 Ga0500622_0000394 Ga0500622_0000394_2357_2821 154
7 3300041511 Ga0451855_1119531 Ga0451855_1119531_723_1268 156
8 iso_pu_bacteria 2513020052 2513233057 156
9 iso_pu_bacteria 2519899754 2520880961 156
10 iso_pu_bacteria 2643221600 2644012496 156
11 iso_pu_bacteria 2643221667 2644371749 156
12 iso_pu_bacteria 2643221716 2644640906 156
13 iso_pu_bacteria 2643221725 2644684360 156
14 iso_pu_bacteria 2738541279 2738734988 156
15 iso_pu_bacteria 2738541285 2738769228 156
16 iso_pu_bacteria 2738543007 2739216570 156
17 iso_pu_bacteria 2739367857 2739999856 156
18 iso_pu_bacteria 2739367858 2740004672 156
19 iso_pu_bacteria 2802428842 2802651748 156
20 iso_pu_bacteria 2816332280 2817414622 156
21 iso_pu_bacteria 2833640130 2833641001 156
22 iso_pu_bacteria 2857613821 2857615397 156
23 iso_pu_bacteria 2857618242 2857622189 156
24 iso_pu_bacteria 2881359912 2881363955 156
25 iso_pu_bacteria 2903895155 2903895701 156
26 iso_pu_bacteria 2904419702 2904422595 156
27 iso_pu_bacteria 2904555929 2904558268 156
28 iso_pu_bacteria 2919191525 2919192915 156
29 iso_pu_bacteria 2919509842 2919510151 156
30 iso_pu_bacteria 2919683626 2919683700 156
31 iso_pu_bacteria 2929150217 2929151763 156
32 iso_pu_bacteria 2958458903 2958460051 156
33 iso_pu_bacteria 2958512119 2958513745 156
34 iso_pu_bacteria 2965320100 2965321822 156
35 iso_pu_bacteria 2977268062 2977268490 156
36 iso_pu_bacteria 8054307821 8054309016 156
37 iso_pu_bacteria 8055419101 8055419602 156
38 iso_pu_bacteria 8055592153 8055595858 156
39 iso_pu_bacteria 8056440228 8056443181 156
40 3300053140 Ga0500573_0083529 Ga0500573_0083529_682_1203 157
41 3300003316 rootH1_10189248 rootH1_101892482 159
42 3300028573 Ga0265334_10026905 Ga0265334_100269052 159
43 3300031250 Ga0265331_10119205 Ga0265331_101192052 159
44 3300031251 Ga0265327_10111586 Ga0265327_101115862 159
45 3300031727 Ga0316576_10649167 Ga0316576_106491671 159
46 3300036647 Ga0316582_0535550 Ga0316582_0535550_179_664 159
47 3300037312 Ga0395899_0139501 Ga0395899_0139501_1095_1580 159
48 3300037418 Ga0395900_0030177 Ga0395900_0030177_3600_4085 159
49 3300044712 Ga0453684_1143986 Ga0453684_1143986_242_724 159
50 3300049576 Ga0501040_0020557 Ga0501040_0020557_3901_4380 159
51 2162886007 SwRhRL2b_contig_2898011 SwRhRL2b_0821.00004540 160
52 3300003322 rootL2_10362498 rootL2_103624982 160
53 3300003578 Ga0006562J51391_1010872 Ga0006562J51391_10108723 160
54 3300005288 Ga0065714_10072888 Ga0065714_100728883 160
55 3300005288 Ga0065714_10083387 Ga0065714_100833871 160
56 3300005288 Ga0065714_10094102 Ga0065714_100941022 160
57 3300005289 Ga0065704_10001098 Ga0065704_100010986 160
58 3300005337 Ga0070682_100068246 Ga0070682_1000682462 160
59 3300005353 Ga0070669_100674572 Ga0070669_1006745721 160
60 3300005365 Ga0070688_100738343 Ga0070688_1007383431 160
61 3300005466 Ga0070685_10026057 Ga0070685_100260574 160
62 3300005616 Ga0068852_100104304 Ga0068852_1001043042 160
63 3300005841 Ga0068863_100934704 Ga0068863_1009347041 160
64 3300006942 Ga0099824_1000108 Ga0099824_100010856 160
65 3300006946 Ga0079104_1000028 Ga0079104_100002831 160
66 3300006948 Ga0099826_10000450 Ga0099826_100004506 160
67 3300009011 Ga0105251_10032423 Ga0105251_100324231 160
68 3300009011 Ga0105251_10127971 Ga0105251_101279712 160
69 3300009036 Ga0105244_10000175 Ga0105244_1000017528 160
70 3300009092 Ga0105250_10032216 Ga0105250_100322163 160
71 3300009101 Ga0105247_11222415 Ga0105247_112224151 160
72 3300009176 Ga0105242_10102613 Ga0105242_101026134 160
73 3300009176 Ga0105242_10117994 Ga0105242_101179943 160
74 3300013100 Ga0157373_10000026 Ga0157373_1000002621 160
75 3300013102 Ga0157371_10006881 Ga0157371_100068815 160
76 3300013102 Ga0157371_10007359 Ga0157371_1000735911 160
77 3300013104 Ga0157370_10003982 Ga0157370_100039823 160
78 3300013104 Ga0157370_10023449 Ga0157370_100234492 160
79 3300013104 Ga0157370_10024390 Ga0157370_100243903 160
80 3300013104 Ga0157370_10051446 Ga0157370_100514463 160
81 3300013104 Ga0157370_10105109 Ga0157370_101051091 160
82 3300013104 Ga0157370_10134610 Ga0157370_101346102 160
83 3300013105 Ga0157369_10026349 Ga0157369_100263493 160
84 3300013307 Ga0157372_10001301 Ga0157372_1000130111 160
85 3300013308 Ga0157375_10042354 Ga0157375_100423543 160
86 3300015261 Ga0182006_1003673 Ga0182006_10036734 160
87 3300015261 Ga0182006_1103726 Ga0182006_11037262 160
88 3300015261 Ga0182006_1201308 Ga0182006_12013081 160
89 3300015261 Ga0182006_1201309 Ga0182006_12013091 160
90 3300017792 Ga0163161_10000461 Ga0163161_1000046117 160
91 3300017792 Ga0163161_11718458 Ga0163161_117184581 160
92 3300025728 Ga0207655_1000003 Ga0207655_1000003797 160
93 3300025735 Ga0207713_1011795 Ga0207713_10117953 160
94 3300025934 Ga0207686_10652102 Ga0207686_106521021 160
95 3300026088 Ga0207641_10892859 Ga0207641_108928591 160
96 3300026142 Ga0207698_11687567 Ga0207698_116875671 160
97 3300027111 Ga0209281_1000069 Ga0209281_100006996 160
98 3300027361 Ga0209489_103490 Ga0209489_1034903 160
99 3300027424 Ga0209984_1044300 Ga0209984_10443001 160
100 3300027666 Ga0209282_1050208 Ga0209282_10502083 160
101 3300031251 Ga0265327_10069298 Ga0265327_100692982 160
102 3300031344 Ga0265316_10167274 Ga0265316_101672742 160
103 3300031548 Ga0307408_100031485 Ga0307408_1000314852 160
104 3300031727 Ga0316576_10214679 Ga0316576_102146792 160
105 3300031731 Ga0307405_10000005 Ga0307405_10000005350 160
106 3300031731 Ga0307405_10011651 Ga0307405_100116512 160
107 3300031824 Ga0307413_10000202 Ga0307413_100002022 160
108 3300031824 Ga0307413_10027045 Ga0307413_100270453 160
109 3300031852 Ga0307410_10001239 Ga0307410_100012392 160
110 3300031901 Ga0307406_10000082 Ga0307406_1000008218 160
111 3300031901 Ga0307406_10005460 Ga0307406_100054603 160
112 3300031995 Ga0307409_100981027 Ga0307409_1009810271 160
113 3300032002 Ga0307416_100001958 Ga0307416_1000019584 160
114 3300032004 Ga0307414_10000108 Ga0307414_1000010826 160
115 3300032004 Ga0307414_10014735 Ga0307414_100147352 160
116 3300032004 Ga0307414_10020965 Ga0307414_100209652 160
117 3300032004 Ga0307414_10048170 Ga0307414_100481702 160
118 3300032004 Ga0307414_10051902 Ga0307414_100519022 160
119 3300032004 Ga0307414_10481497 Ga0307414_104814971 160
120 3300032004 Ga0307414_11126410 Ga0307414_111264101 160
121 3300032005 Ga0307411_10000002 Ga0307411_10000002292 160
122 3300032005 Ga0307411_10474303 Ga0307411_104743032 160
123 3300033180 Ga0307510_10170315 Ga0307510_101703151 160
124 3300035118 Ga0373954_0505330 Ga0373954_0505330_69_563 160
125 3300035398 Ga0316574_0036063 Ga0316574_0036063_1322_1804 160
126 3300035398 Ga0316574_0155346 Ga0316574_0155346_38_520 160
127 3300037471 Ga0395905_0000011 Ga0395905_0000011_116620_117111 160
128 3300038443 Ga0395901_0026627 Ga0395901_0026627_4038_4523 160
129 3300041407 Ga0439447_000149 Ga0439447_000149_11948_12430 160
130 3300041411 Ga0439466_0012912 Ga0439466_0012912_1591_2073 160
131 3300041411 Ga0439466_0029886 Ga0439466_0029886_956_1438 160
132 3300041463 Ga0451804_0551215 Ga0451804_0551215_18_500 160
133 3300041494 Ga0451837_0864967 Ga0451837_0864967_84_566 160
134 3300041509 Ga0451843_1653518 Ga0451843_1653518_21_605 160
135 3300041511 Ga0451855_0218254 Ga0451855_0218254_249_731 160
136 3300042010 Ga0439452_012725 Ga0439452_012725_1543_2025 160
137 3300044673 Ga0453683_0163534 Ga0453683_0163534_422_916 160
138 3300044712 Ga0453684_0004621 Ga0453684_0004621_3879_4367 160
139 3300044712 Ga0453684_0528691 Ga0453684_0528691_326_889 160
140 3300045051 Ga0451576_0000002 Ga0451576_0000002_694087_694578 160
141 3300046454 Ga0495592_0062176 Ga0495592_0062176_1365_1859 160
142 3300046462 Ga0495651_0625327 Ga0495651_0625327_173_667 160
143 3300046477 Ga0495664_0100267 Ga0495664_0100267_290_784 160
144 3300046512 Ga0495610_0071458 Ga0495610_0071458_487_969 160
145 3300046530 Ga0495654_0096605 Ga0495654_0096605_52_534 160
146 3300046530 Ga0495654_0198549 Ga0495654_0198549_266_748 160
147 3300046533 Ga0495640_0064925 Ga0495640_0064925_1877_2371 160
148 3300046535 Ga0495586_0132902 Ga0495586_0132902_818_1312 160
149 3300046559 Ga0495667_0074846 Ga0495667_0074846_1392_1886 160
150 3300046642 Ga0495634_0006928 Ga0495634_0006928_1559_2053 160
151 3300046678 Ga0495599_0053085 Ga0495599_0053085_598_1092 160
152 3300046809 Ga0495600_0200060 Ga0495600_0200060_611_1105 160
153 3300046810 Ga0495660_0146869 Ga0495660_0146869_26_508 160
154 3300047322 Ga0495680_0227938 Ga0495680_0227938_508_1002 160
155 3300048919 Ga0496116_0000002 Ga0496116_0000002_279877_280359 160
156 3300048924 Ga0496121_0024231 Ga0496121_0024231_1958_2440 160
157 3300048926 Ga0496123_0267725 Ga0496123_0267725_289_771 160
158 3300048927 Ga0496124_0051466 Ga0496124_0051466_1352_1834 160
159 3300048928 Ga0496125_0000007 Ga0496125_0000007_281662_282144 160
160 3300048929 Ga0496126_0064654 Ga0496126_0064654_532_1014 160
161 3300048929 Ga0496126_0316998 Ga0496126_0316998_125_607 160
162 3300049530 Ga0501314_000185 Ga0501314_000185_2821_3303 160
163 3300049539 Ga0501323_000301 Ga0501323_000301_2851_3333 160
164 3300049572 Ga0501036_0119237 Ga0501036_0119237_40_522 160
165 3300049581 Ga0501047_0179795 Ga0501047_0179795_673_1155 160
166 3300049679 Ga0501249_000035 Ga0501249_000035_12401_12883 160
167 3300049679 Ga0501249_013112 Ga0501249_013112_422_904 160
168 3300049758 Ga0501241_025339 Ga0501241_025339_575_1057 160
169 3300049763 Ga0501266_000001 Ga0501266_000001_335311_335793 160
170 3300049766 Ga0501269_000585 Ga0501269_000585_3020_3502 160
171 3300049776 Ga0501280_000107 Ga0501280_000107_10230_10712 160
172 3300049822 Ga0501035_0002368 Ga0501035_0002368_12419_12901 160
173 3300050490 nmdc:mga03n38_120073_c1 nmdc:mga03n38_120073_c1_406_888 160
174 3300053096 Ga0500641_0000046 Ga0500641_0000046_49631_50113 160
175 3300053096 Ga0500641_0002446 Ga0500641_0002446_1830_2312 160
176 3300053134 Ga0500658_0000001 Ga0500658_0000001_111947_112429 160
177 3300053136 Ga0500559_0006834 Ga0500559_0006834_3861_4343 160
178 3300053147 Ga0500589_124357 Ga0500589_124357_205_687 160
179 3300053726 Ga0500584_015323 Ga0500584_015323_605_1087 160

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00383

dCMP_cyt_deam_1

Cytidine and deoxycytidylate deaminase zinc-binding region

38

147

0.9

PF08211

dCMP_cyt_deam_2

Cytidine and deoxycytidylate deaminase zinc-binding region

5

123

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
1ux0-assembly1.cif.gz_B-2 bacillus subtilis cytidine deaminase with an arg56 - gln substitution 0.9216 23 160
1jtk-assembly1.cif.gz_A crystal structure of cytidine deaminase from bacillus subtilis in complex with the inhibitor tetrahydrodeoxyuridine 0.9071 23 159
1uwz-assembly1.cif.gz_A bacillus subtilis cytidine deaminase with an arg56 - ala substitution 0.9061 23 160
1ux0-assembly1.cif.gz_B-2 bacillus subtilis cytidine deaminase with an arg56 - gln substitution 0.9027 23 160
1ux1-assembly1.cif.gz_D bacillus subtilis cytidine deaminase with a cys53his and an arg56gln substitution 0.8953 23 159
ID Description Score Start End Superfamily
af_A0A1D8PMQ1_5_145_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.8468 17 159 3.40.140.10
af_F1QSJ0_1_133_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.8446 23 159 3.40.140.10
af_Q4DCG1_17_164_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.8418 19 160 3.40.140.10
af_Q09190_1_133_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.833 21 159 3.40.140.10
4wigA00 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.8305 20 160 3.40.140.10
ID Description Score Start End GO Terms
AF-A0A2U0HWR5-F1-model_v4 Cytidine deaminase (EC 3.5.4.5) (Cytidine aminohydrolase) 0.9852 1 160 GO:0004126
GO:0005829
GO:0008270
GO:0009972
GO:0042802
AF-A0A2D7K8G1-F1-model_v4 Cytidine deaminase 0.9844 2 155 GO:0004126
GO:0005829
GO:0008270
GO:0009972
AF-A0A0B7HPM4-F1-model_v4 Cytidine aminohydrolase (EC 3.5.4.5) 0.9837 27 137 GO:0004126
GO:0005829
GO:0008270
GO:0009972
GO:0042802
AF-A0A1M6MDI4-F1-model_v4 Cytidine deaminase (EC 3.5.4.5) (Cytidine aminohydrolase) 0.9836 1 160 GO:0004126
GO:0005829
GO:0008270
GO:0009972
GO:0042802
AF-A0A7M3SYP0-F1-model_v4 Cytidine deaminase (EC 3.5.4.5) (Cytidine aminohydrolase) 0.9832 1 160 GO:0004126
GO:0005829
GO:0008270
GO:0009972
GO:0042802

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pLDDT pTM Quality
94.58 0.89 High
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Predicted Structure (AlphaFold2)

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