F270690

General Info

Members Datasets Scaffolds Average Seq Length
177 135 354 427

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0294122|Ga0453684_0294122_109_1494
Length 461
Sequence VETKANYTRWYYPHTGIFENQSMAFGAAQMKVCVLGLWHLGTVTAGCLTLGGHRVTGLDFDETVITNLKNGKPPLFEPGLEDLVKKGLASGVLDFSTNPAEAVRDAQVIWVTYDTPVDNEDNADVEYVVERVTRLFPHLVAGQEVLISSQLPVGTSRRLETMFAQIRSNVDVSFSYSPENLRLGKAISVFTQPDRVVIGIRSEKSRKVLTELLAPFTDHIEWMSVESAEMTKHALNAFLATSVTFINEIAAICEQVGADAKEVERGLKSESRIGPKAYLGPGGAFAGGTLARDIAFLTKLGQQNDLPIHLVPSVRASNDAHKNWPRRRLAQLLGELKGKTIAVWGLTYKPGTDTLRRSSAIELCQWLLEQDAQVQAHDPAVKNLPAQYSAIHLCASPLEAAQDAQALVIATEWPDYRTVSMPETLSLMRSPILLDANRFLASSLEGLPEAIYVTVGKALRV

Samples

Sample ID Description Type Environment
1 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
2 2162886011 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
4 3300000545 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNX_Illumina_Assembled Metagenome Rhizosphere
5 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
9 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
10 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
11 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
12 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
13 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
14 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
15 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
16 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
17 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
18 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
19 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
20 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
21 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
22 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
23 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
24 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
25 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
26 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
27 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
28 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
29 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
30 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
31 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
32 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
33 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
34 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
35 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
36 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
37 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
38 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
39 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
40 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
41 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
42 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
43 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
44 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
45 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
46 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
47 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
48 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
49 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
50 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
51 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
52 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
53 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
54 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
55 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
56 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
57 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
58 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
59 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
60 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
61 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
62 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
63 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
64 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
65 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
66 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
67 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
68 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
97 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
98 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
99 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
100 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
101 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
102 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
103 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
104 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
105 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
106 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
107 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
108 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
109 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
110 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
111 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
112 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
113 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
114 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
115 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
116 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
117 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
118 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
119 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
120 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
121 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
122 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
123 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
124 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
125 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
126 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
127 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
128 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
129 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
130 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
131 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
132 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
133 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
134 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
135 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.95
Nodule 0
Rhizoplane 0.56
Rhizosphere 87.01
Stem 0
Stem Tuber 0
Unclassified 10.73

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0453684_0294122 3300044712 Unclassified 1848
2 MRS1b_contig_9363789 2162886011 Bacteria 1575
3 MBSR1b_contig_2139903 2162886012 Unclassified 1710
4 CNXas_1000076 3300000545 Bacteria 18524
5 JGI25165J46597_1000013 3300003214 Bacteria 402100
6 rootL2_10103804 3300003322 Unclassified 2653
7 rootH1_10023207 3300003323 Bacteria 14573
8 rootH1_10151052 3300003323 Unclassified 1923
9 Ga0065704_10132115 3300005289 Unclassified 1616
10 Ga0065712_10006858 3300005290 Unclassified 3187
11 Ga0065712_10073631 3300005290 Bacteria 4328
12 Ga0065715_10001501 3300005293 Bacteria 16194
13 Ga0070676_10002838 3300005328 Bacteria 8949
14 Ga0070666_10001983 3300005335 Bacteria 12444
15 Ga0068868_100013997 3300005338 Bacteria 5901
16 Ga0068868_100018221 3300005338 Bacteria 5246
17 Ga0070669_100001783 3300005353 Bacteria 15484
18 Ga0070674_100002849 3300005356 Bacteria 9559
19 Ga0070674_100109554 3300005356 Bacteria 2025
20 Ga0070673_100004536 3300005364 Bacteria 8795
21 Ga0070673_100050923 3300005364 Bacteria 3240
22 Ga0070673_100165821 3300005364 Bacteria 1882
23 Ga0070673_100183987 3300005364 Bacteria 1790
24 Ga0070688_100172072 3300005365 Bacteria 1495
25 Ga0070667_100017597 3300005367 Bacteria 5922
26 Ga0070703_10000233 3300005406 Bacteria 26980
27 Ga0070709_10001454 3300005434 Bacteria 12751
28 Ga0070714_100024700 3300005435 Unclassified 4953
29 Ga0070713_100002612 3300005436 Bacteria 11768
30 Ga0070710_10001045 3300005437 Bacteria 13169
31 Ga0070711_100001411 3300005439 Bacteria 13175
32 Ga0070705_100109458 3300005440 Bacteria 1762
33 Ga0070663_100031525 3300005455 Bacteria 3643
34 Ga0070678_100006171 3300005456 Bacteria 7006
35 Ga0070662_100004789 3300005457 Bacteria 8572
36 Ga0070662_100080533 3300005457 Bacteria 2424
37 Ga0070681_10109087 3300005458 Bacteria 2708
38 Ga0068867_100033829 3300005459 Bacteria 3704
39 Ga0070707_100002532 3300005468 Bacteria 17383
40 Ga0070707_100005565 3300005468 Bacteria 11769
41 Ga0070698_100022687 3300005471 Bacteria 6564
42 Ga0070697_100005320 3300005536 Bacteria 9890
43 Ga0070672_100003809 3300005543 Bacteria 9820
44 Ga0070672_100200844 3300005543 Bacteria 1667
45 Ga0070686_100077548 3300005544 Bacteria 2191
46 Ga0070696_100051373 3300005546 Bacteria 2867
47 Ga0070665_100083909 3300005548 Unclassified 3191
48 Ga0070704_100044918 3300005549 Unclassified 3073
49 Ga0068857_100031212 3300005577 Bacteria 4709
50 Ga0068857_100043068 3300005577 Bacteria 4005
51 Ga0068856_100001793 3300005614 Bacteria 22418
52 Ga0070702_100083059 3300005615 Bacteria 1923
53 Ga0068859_100050132 3300005617 Bacteria 4194
54 Ga0068858_100037946 3300005842 Bacteria 4468
55 Ga0068862_100010872 3300005844 Bacteria 7516
56 Ga0070715_10009500 3300006163 Bacteria 3431
57 Ga0070716_100000376 3300006173 Bacteria 18255
58 Ga0070712_100014323 3300006175 Bacteria 5091
59 Ga0097621_100008119 3300006237 Bacteria 7546
60 Ga0097621_100088318 3300006237 Unclassified 2590
61 Ga0075428_100033377 3300006844 Bacteria 5684
62 Ga0075429_100053635 3300006880 Unclassified 3508
63 Ga0075436_100008604 3300006914 Bacteria 6976
64 Ga0097620_100050135 3300006931 Bacteria 4194
65 Ga0075435_100004141 3300007076 Bacteria 9939
66 Ga0075435_100004283 3300007076 Bacteria 9807
67 Ga0099794_10048087 3300007265 Bacteria 2047
68 Ga0105240_10000907 3300009093 Bacteria 52922
69 Ga0105240_10002293 3300009093 Bacteria 30974
70 Ga0105240_10043692 3300009093 Bacteria 5699
71 Ga0105240_10183429 3300009093 Bacteria 2468
72 Ga0111539_10048775 3300009094 Bacteria 5053
73 Ga0105237_10000319 3300009545 Bacteria 67468
74 Ga0157369_10123204 3300013105 Bacteria 2750
75 Ga0157378_10023178 3300013297 Bacteria 5464
76 Ga0163162_10004049 3300013306 Bacteria 14063
77 Ga0163162_10010460 3300013306 Bacteria 9020
78 Ga0163162_10032972 3300013306 Bacteria 5144
79 Ga0157372_10275783 3300013307 Bacteria 1955
80 Ga0157375_10001237 3300013308 Bacteria 22079
81 Ga0157375_10105724 3300013308 Bacteria 2906
82 Ga0163163_10016796 3300014325 Bacteria 6813
83 Ga0157376_10008174 3300014969 Bacteria 7528
84 Ga0163161_10001138 3300017792 Bacteria 20005
85 Ga0213875_10003330 3300021388 Bacteria 9178
86 Ga0209233_1000013 3300025261 Bacteria 1013785
87 Ga0207697_10000196 3300025315 Bacteria 32121
88 Ga0207653_10000023 3300025885 Bacteria 118612
89 Ga0207692_10003760 3300025898 Bacteria 5962
90 Ga0207699_10004442 3300025906 Bacteria 6708
91 Ga0207645_10000461 3300025907 Bacteria 33685
92 Ga0207695_10004991 3300025913 Bacteria 17843
93 Ga0207695_10024282 3300025913 Bacteria 6825
94 Ga0207693_10002016 3300025915 Bacteria 17828
95 Ga0207663_10006384 3300025916 Bacteria 6030
96 Ga0207663_10015224 3300025916 Bacteria 4238
97 Ga0207646_10003602 3300025922 Bacteria 17364
98 Ga0207646_10020604 3300025922 Bacteria 6107
99 Ga0207659_10171956 3300025926 Bacteria 1710
100 Ga0207687_10000300 3300025927 Bacteria 33911
101 Ga0207664_10019930 3300025929 Unclassified 4965
102 Ga0207664_10104183 3300025929 Unclassified 2349
103 Ga0207644_10004188 3300025931 Bacteria 9359
104 Ga0207706_10044775 3300025933 Unclassified 3921
105 Ga0207706_10128451 3300025933 Bacteria 2229
106 Ga0207669_10032748 3300025937 Bacteria 2923
107 Ga0207669_10080897 3300025937 Bacteria 2079
108 Ga0207665_10004455 3300025939 Bacteria 9299
109 Ga0207691_10011706 3300025940 Bacteria 8424
110 Ga0207691_10218139 3300025940 Bacteria 1655
111 Ga0207651_10035125 3300025960 Unclassified 3255
112 Ga0207668_10006523 3300025972 Bacteria 6895
113 Ga0207640_10006837 3300025981 Bacteria 6270
114 Ga0207639_10000006 3300026041 Bacteria 544415
115 Ga0207678_10024582 3300026067 Bacteria 5262
116 Ga0207708_10092309 3300026075 Bacteria 2336
117 Ga0207702_10001595 3300026078 Bacteria 22439
118 Ga0207674_10101939 3300026116 Bacteria 2851
119 Ga0207675_100130007 3300026118 Bacteria 2387
120 Ga0268266_10154869 3300028379 Bacteria 2069
121 Ga0268265_10006970 3300028380 Bacteria 7645
122 Ga0265318_10000784 3300028577 Bacteria 21067
123 Ga0265338_10003694 3300028800 Bacteria 21305
124 Ga0265338_10027669 3300028800 Bacteria 5681
125 Ga0265324_10003746 3300029957 Bacteria 7112
126 Ga0265320_10020704 3300031240 Bacteria 3557
127 Ga0265325_10003706 3300031241 Bacteria 9887
128 Ga0265339_10004177 3300031249 Bacteria 9913
129 Ga0265316_10005668 3300031344 Bacteria 12085
130 Ga0265316_10043319 3300031344 Bacteria 3589
131 Ga0265313_10002137 3300031595 Bacteria 17573
132 Ga0373926_0001176 3300035083 Bacteria 7804
133 Ga0373936_0006955 3300035113 Bacteria 4258
134 Ga0373935_0001823 3300035692 Bacteria 11948
135 Ga0373927_0000981 3300035695 Bacteria 21691
136 Ga0373947_0003808 3300035725 Bacteria 8892
137 Ga0373925_0008145 3300037068 Bacteria 7632
138 Ga0436364_1535238 3300037853 Bacteria 6743
139 Ga0436365_1239385 3300039437 Bacteria 26130
140 Ga0453683_0042292 3300044673 Bacteria 2861
141 Ga0453684_0008232 3300044712 Bacteria 18796
142 Ga0453684_0009628 3300044712 Bacteria 16845
143 Ga0453684_0017232 3300044712 Bacteria 11216
144 Ga0453684_0033964 3300044712 Bacteria 7093
145 Ga0453684_0171561 3300044712 Unclassified 2556
146 Ga0453684_0178895 3300044712 Bacteria 2491
147 Ga0466960_0000002 3300044901 Bacteria 103573
148 Ga0451576_0017544 3300045051 Bacteria 7867
149 Ga0451576_0229054 3300045051 Bacteria 1941
150 Ga0495603_0004176 3300046455 Bacteria 8607
151 Ga0495584_0008553 3300046491 Bacteria 5300
152 Ga0495645_0000560 3300046543 Bacteria 25580
153 Ga0495622_0041386 3300046557 Bacteria 2143
154 Ga0495613_0142480 3300046689 Unclassified 1712
155 Ga0496107_0008031 3300048910 Bacteria 7286
156 Ga0496119_0001441 3300048922 Bacteria 28653
157 Ga0496119_0001857 3300048922 Bacteria 24381
158 Ga0496120_0000381 3300048923 Bacteria 71695
159 Ga0496120_0011592 3300048923 Bacteria 6054
160 Ga0496121_0003042 3300048924 Bacteria 24336
161 Ga0496125_0006245 3300048928 Bacteria 12953
162 Ga0496126_0003055 3300048929 Bacteria 21695
163 Ga0496126_0014472 3300048929 Bacteria 7973
164 Ga0496126_0075312 3300048929 Bacteria 2996
165 Ga0501067_0012600 3300049583 Bacteria 4692
166 Ga0501070_0001411 3300049586 Bacteria 21509
167 Ga0501070_0058516 3300049586 Bacteria 3195
168 nmdc:mga09592_126140_c1 3300050508 Bacteria 2200
169 nmdc:mga09592_60879_c1 3300050508 Unclassified 3192
170 nmdc:mga0rr50_35493_c1 3300050513 Unclassified 3581
171 nmdc:mga08x19_37812_c1 3300050514 Bacteria 3064
172 Ga0500635_0001609 3300053080 Bacteria 5440
173 Ga0500566_0001619 3300053094 Bacteria 13254
174 Ga0500603_001238 3300053150 Bacteria 5929
175 Ga0500603_005171 3300053150 Bacteria 2798
176 Ga0500637_0046729 3300053178 Bacteria 2457
177 Ga0501082_0130094 3300060353 Bacteria 2184
178 Ga0453684_0294122
179 MRS1b_contig_9363789
180 MBSR1b_contig_2139903
181 CNXas_1000076
182 JGI25165J46597_1000013
183 rootL2_10103804
184 rootH1_10023207
185 rootH1_10151052
186 Ga0065704_10132115
187 Ga0065712_10006858
188 Ga0065712_10073631
189 Ga0065715_10001501
190 Ga0070676_10002838
191 Ga0070666_10001983
192 Ga0068868_100013997
193 Ga0068868_100018221
194 Ga0070669_100001783
195 Ga0070674_100002849
196 Ga0070674_100109554
197 Ga0070673_100004536
198 Ga0070673_100050923
199 Ga0070673_100165821
200 Ga0070673_100183987
201 Ga0070688_100172072
202 Ga0070667_100017597
203 Ga0070703_10000233
204 Ga0070709_10001454
205 Ga0070714_100024700
206 Ga0070713_100002612
207 Ga0070710_10001045
208 Ga0070711_100001411
209 Ga0070705_100109458
210 Ga0070663_100031525
211 Ga0070678_100006171
212 Ga0070662_100004789
213 Ga0070662_100080533
214 Ga0070681_10109087
215 Ga0068867_100033829
216 Ga0070707_100002532
217 Ga0070707_100005565
218 Ga0070698_100022687
219 Ga0070697_100005320
220 Ga0070672_100003809
221 Ga0070672_100200844
222 Ga0070686_100077548
223 Ga0070696_100051373
224 Ga0070665_100083909
225 Ga0070704_100044918
226 Ga0068857_100031212
227 Ga0068857_100043068
228 Ga0068856_100001793
229 Ga0070702_100083059
230 Ga0068859_100050132
231 Ga0068858_100037946
232 Ga0068862_100010872
233 Ga0070715_10009500
234 Ga0070716_100000376
235 Ga0070712_100014323
236 Ga0097621_100008119
237 Ga0097621_100088318
238 Ga0075428_100033377
239 Ga0075429_100053635
240 Ga0075436_100008604
241 Ga0097620_100050135
242 Ga0075435_100004141
243 Ga0075435_100004283
244 Ga0099794_10048087
245 Ga0105240_10000907
246 Ga0105240_10002293
247 Ga0105240_10043692
248 Ga0105240_10183429
249 Ga0111539_10048775
250 Ga0105237_10000319
251 Ga0157369_10123204
252 Ga0157378_10023178
253 Ga0163162_10004049
254 Ga0163162_10010460
255 Ga0163162_10032972
256 Ga0157372_10275783
257 Ga0157375_10001237
258 Ga0157375_10105724
259 Ga0163163_10016796
260 Ga0157376_10008174
261 Ga0163161_10001138
262 Ga0213875_10003330
263 Ga0209233_1000013
264 Ga0207697_10000196
265 Ga0207653_10000023
266 Ga0207692_10003760
267 Ga0207699_10004442
268 Ga0207645_10000461
269 Ga0207695_10004991
270 Ga0207695_10024282
271 Ga0207693_10002016
272 Ga0207663_10006384
273 Ga0207663_10015224
274 Ga0207646_10003602
275 Ga0207646_10020604
276 Ga0207659_10171956
277 Ga0207687_10000300
278 Ga0207664_10019930
279 Ga0207664_10104183
280 Ga0207644_10004188
281 Ga0207706_10044775
282 Ga0207706_10128451
283 Ga0207669_10032748
284 Ga0207669_10080897
285 Ga0207665_10004455
286 Ga0207691_10011706
287 Ga0207691_10218139
288 Ga0207651_10035125
289 Ga0207668_10006523
290 Ga0207640_10006837
291 Ga0207639_10000006
292 Ga0207678_10024582
293 Ga0207708_10092309
294 Ga0207702_10001595
295 Ga0207674_10101939
296 Ga0207675_100130007
297 Ga0268266_10154869
298 Ga0268265_10006970
299 Ga0265318_10000784
300 Ga0265338_10003694
301 Ga0265338_10027669
302 Ga0265324_10003746
303 Ga0265320_10020704
304 Ga0265325_10003706
305 Ga0265339_10004177
306 Ga0265316_10005668
307 Ga0265316_10043319
308 Ga0265313_10002137
309 Ga0373926_0001176
310 Ga0373936_0006955
311 Ga0373935_0001823
312 Ga0373927_0000981
313 Ga0373947_0003808
314 Ga0373925_0008145
315 Ga0436364_1535238
316 Ga0436365_1239385
317 Ga0453683_0042292
318 Ga0453684_0008232
319 Ga0453684_0009628
320 Ga0453684_0017232
321 Ga0453684_0033964
322 Ga0453684_0171561
323 Ga0453684_0178895
324 Ga0466960_0000002
325 Ga0451576_0017544
326 Ga0451576_0229054
327 Ga0495603_0004176
328 Ga0495584_0008553
329 Ga0495645_0000560
330 Ga0495622_0041386
331 Ga0495613_0142480
332 Ga0496107_0008031
333 Ga0496119_0001441
334 Ga0496119_0001857
335 Ga0496120_0000381
336 Ga0496120_0011592
337 Ga0496121_0003042
338 Ga0496125_0006245
339 Ga0496126_0003055
340 Ga0496126_0014472
341 Ga0496126_0075312
342 Ga0501067_0012600
343 Ga0501070_0001411
344 Ga0501070_0058516
345 nmdc:mga09592_126140_c1
346 nmdc:mga09592_60879_c1
347 nmdc:mga0rr50_35493_c1
348 nmdc:mga08x19_37812_c1
349 Ga0500635_0001609
350 Ga0500566_0001619
351 Ga0500603_001238
352 Ga0500603_005171
353 Ga0500637_0046729
354 Ga0501082_0130094

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00984

UDPG_MGDP_dh

UDP-glucose/GDP-mannose dehydrogenase family, central domain

226

320

0.97

PF03720

UDPG_MGDP_dh_C

UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain

342

442

0.96

PF03721

UDPG_MGDP_dh_N

UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain

30

212

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
7fgp-assembly1.cif.gz_A crystal structure of aureimonas altamirenisis flavin-containing opine dehydrogenase (fad-bound form) 0.9943 1 32
2qcu-assembly1.cif.gz_A crystal structure of glycerol-3-phosphate dehydrogenase from escherichia coli 0.9813 2 32
6pvj-assembly1.cif.gz_A crystal structure of phqk in complex with malbrancheamide c 0.9757 2 30
7exs-assembly1.cif.gz_A thermomicrobium roseum sarcosine oxidase mutant - s320r 0.9691 1 31
3ka7-assembly1.cif.gz_A crystal structure of an oxidoreductase from methanosarcina mazei. northeast structural genomics consortium target id mar208 0.9688 1 31
ID Description Score Start End Superfamily
4j36B00 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9666 2 33 3.50.50.60
af_P37906_24_389_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9572 2 32 3.50.50.60
4a7pA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9482 2 195 3.40.50.720
2aczA01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9411 2 31 3.50.50.60
3i3lA01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9353 2 32 3.50.50.60
ID Description Score Start End GO Terms
AF-A0A534U2B9-F1-model_v4 UDP-glucose 6-dehydrogenase (EC 1.1.1.22) 0.9787 1 429 GO:0000271
GO:0003979
GO:0006065
GO:0051287
AF-A0A534U2B9-F1-model_v4 UDP-glucose 6-dehydrogenase (EC 1.1.1.22) 0.9764 1 429 GO:0000271
GO:0003979
GO:0006065
GO:0051287
AF-A0A4V3D8T8-F1-model_v4 UDP-glucose/GDP-mannose dehydrogenase family protein 0.9706 1 84 GO:0016616
GO:0051287
AF-A0A7W0NS13-F1-model_v4 UDP-glucose/GDP-mannose dehydrogenase family protein 0.9674 1 142 GO:0016616
GO:0051287
AF-A0A4R5VM51-F1-model_v4 UDP-glucose/GDP-mannose dehydrogenase family protein 0.9668 1 205 GO:0000271
GO:0016616
GO:0016628
GO:0051287

Map