F269509

General Info

Members Datasets Scaffolds Average Seq Length
177 106 354 345

Family's Representative Sequence

Representative Sequence 3300005329|Ga0070683_100006586|Ga0070683_1000065867
Length 366
Sequence MPERATPAPERLTGTVLVTGGAGFIGSALVRHILRETSLRVVNVDKLTYAGHLDSLSECIGQSRYAFEHVDVCDGSALRRVLAQYTPDAVLHLAAESHVDRSIDEPADFIRTNIGGTFTLLQEVRRYWDALAPHARRRFRVVHVSTDEVFGALAADGVFTERSAYQPNSPYAASKAAADHLVRAWHHTYGLPLLTTNCCNNYGPYQYPEKLIPLTIERALAGQAVPVYGTGEHIRDWLYVNDHVRALLMVLELGTPGQMYCISAQSERRNIDVTRSICELLDELAPDPRLGTRSTLIEFVPDRPGHDFRYALDPRRIRDELGWFPRETFESGTRKTVMWYLAHRDWTRRVQIGARRGPRLELGGIA

Samples

Sample ID Description Type Environment
1 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
9 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
13 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
14 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
15 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
16 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
17 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
18 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
19 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
20 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
21 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
22 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
23 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
24 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
25 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
26 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
27 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
28 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
29 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
30 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
31 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
32 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
33 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
34 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
35 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
36 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
37 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
38 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
39 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
40 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
41 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
42 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
43 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
44 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
45 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
46 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
47 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
48 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
49 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
50 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
51 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
52 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
53 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
72 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
73 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
74 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
75 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
76 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
77 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
78 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
79 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
80 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
81 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
82 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
83 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
84 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
85 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
86 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
87 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
88 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
89 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
90 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
91 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
94 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
95 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
96 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
97 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
98 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
99 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
100 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
101 2808606364 Bacillus sp. SLBN-3 Isolate Unclassified
102 2883577096 Roseococcus sp. SYP-B2431 Isolate Rhizosphere
103 2894772417 Roseomonas oryzicola KCTC 22478 Isolate Rhizosphere
104 2921208531 Sinorhizobium meliloti USDA1660 Isolate Nodule
105 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified
106 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 96.61
Metatranscriptomes 0
Isolates 3.39

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.56
Nodule 0.56
Rhizoplane 0
Rhizosphere 92.66
Stem 0
Stem Tuber 0
Unclassified 0.56

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070683_100006586 3300005329 Bacteria 9755
2 JGI25406J46586_10005313 3300003203 Bacteria 5977
3 rootH2_10003113 3300003320 Bacteria 15268
4 Ga0065712_10177759 3300005290 Bacteria 1209
5 Ga0070683_100053941 3300005329 Bacteria 3726
6 Ga0070680_100049910 3300005336 Bacteria 3412
7 Ga0070682_100013982 3300005337 Bacteria 4631
8 Ga0070689_100096972 3300005340 Bacteria 2331
9 Ga0070661_100074341 3300005344 Bacteria 2502
10 Ga0070668_100030626 3300005347 Bacteria 4092
11 Ga0070669_100006749 3300005353 Bacteria 8264
12 Ga0070659_100225724 3300005366 Bacteria 1547
13 Ga0070703_10006639 3300005406 Bacteria 3239
14 Ga0070709_10074948 3300005434 Bacteria 2194
15 Ga0070714_100028529 3300005435 Bacteria 4632
16 Ga0070714_100111208 3300005435 Bacteria 2426
17 Ga0070701_10081143 3300005438 Bacteria 1756
18 Ga0070705_100005054 3300005440 Bacteria 6420
19 Ga0070700_100161744 3300005441 Bacteria 1542
20 Ga0070708_100003003 3300005445 Bacteria 13103
21 Ga0070708_100003847 3300005445 Bacteria 11782
22 Ga0070708_100022454 3300005445 Bacteria 5353
23 Ga0070708_100191739 3300005445 Bacteria 1911
24 Ga0070681_10283626 3300005458 Bacteria 1567
25 Ga0070706_100000059 3300005467 Bacteria 131531
26 Ga0070706_100000192 3300005467 Bacteria 76632
27 Ga0070706_100001501 3300005467 Bacteria 24501
28 Ga0070706_100002009 3300005467 Bacteria 20909
29 Ga0070706_100029815 3300005467 Bacteria 5026
30 Ga0070706_100057260 3300005467 Bacteria 3597
31 Ga0070707_100000024 3300005468 Bacteria 128517
32 Ga0070707_100003458 3300005468 Archaea 14913
33 Ga0070707_100006053 3300005468 Bacteria 11294
34 Ga0070707_100007778 3300005468 Bacteria 9955
35 Ga0070707_100016706 3300005468 Bacteria 6890
36 Ga0070707_100018025 3300005468 Archaea 6642
37 Ga0070707_100025063 3300005468 Bacteria 5657
38 Ga0070707_100027301 3300005468 Bacteria 5431
39 Ga0070698_100006767 3300005471 Bacteria 12428
40 Ga0070698_100023124 3300005471 Bacteria 6499
41 Ga0070698_100046286 3300005471 Bacteria 4448
42 Ga0070698_100089473 3300005471 Bacteria 3062
43 Ga0070699_100000046 3300005518 Bacteria 124488
44 Ga0070699_100000126 3300005518 Bacteria 70354
45 Ga0070699_100000366 3300005518 Bacteria 44267
46 Ga0070699_100002360 3300005518 Bacteria 16934
47 Ga0070699_100008458 3300005518 Bacteria 8913
48 Ga0070699_100012065 3300005518 Archaea 7458
49 Ga0070699_100049131 3300005518 Bacteria 3652
50 Ga0070679_100007920 3300005530 Bacteria 9970
51 Ga0070684_100002410 3300005535 Bacteria 13780
52 Ga0070697_100000213 3300005536 Bacteria 47455
53 Ga0070697_100007236 3300005536 Archaea 8633
54 Ga0070697_100014873 3300005536 Bacteria 6107
55 Ga0070697_100019185 3300005536 Bacteria 5399
56 Ga0070697_100037814 3300005536 Bacteria 3898
57 Ga0070697_100066643 3300005536 Bacteria 2944
58 Ga0070697_100137312 3300005536 Bacteria 2054
59 Ga0070695_100222893 3300005545 Archaea 1359
60 Ga0070696_100016908 3300005546 Bacteria 4920
61 Ga0070704_100007932 3300005549 Bacteria 6337
62 Ga0070704_100174042 3300005549 Bacteria 1715
63 Ga0068855_100026178 3300005563 Bacteria 6978
64 Ga0068857_100067179 3300005577 Bacteria 3191
65 Ga0068852_100017334 3300005616 Bacteria 5648
66 Ga0068852_100026223 3300005616 Bacteria 4734
67 Ga0068861_100091145 3300005719 Bacteria 2406
68 Ga0068870_10009264 3300005840 Bacteria 4471
69 Ga0068858_100423122 3300005842 Bacteria 1281
70 Ga0068862_100001857 3300005844 Bacteria 19143
71 Ga0070717_10000065 3300006028 Bacteria 88895
72 Ga0070717_10146612 3300006028 Bacteria 2039
73 Ga0070716_100107176 3300006173 Bacteria 1725
74 Ga0075434_100127926 3300006871 Bacteria 2557
75 Ga0075436_100005909 3300006914 Bacteria 8409
76 Ga0075436_100214015 3300006914 Bacteria 1367
77 Ga0099794_10000174 3300007265 Bacteria 23500
78 Ga0105240_10017962 3300009093 Bacteria 9515
79 Ga0105238_10133842 3300009551 Bacteria 2457
80 Ga0105249_10000663 3300009553 Bacteria 31237
81 Ga0157373_10004565 3300013100 Bacteria 10413
82 Ga0157373_10020188 3300013100 Bacteria 4846
83 Ga0157371_10060075 3300013102 Bacteria 2695
84 Ga0157370_10010092 3300013104 Bacteria 9976
85 Ga0157369_10003672 3300013105 Bacteria 18227
86 Ga0157369_10100325 3300013105 Bacteria 3086
87 Ga0163162_10015232 3300013306 Bacteria 7511
88 Ga0157372_10002428 3300013307 Bacteria 20176
89 Ga0157372_10041305 3300013307 Bacteria 5099
90 Ga0157372_10160902 3300013307 Bacteria 2595
91 Ga0157380_10039344 3300014326 Bacteria 3677
92 Ga0213875_10003235 3300021388 Bacteria 9351
93 Ga0207653_10005178 3300025885 Bacteria 4077
94 Ga0207643_10001051 3300025908 Bacteria 16358
95 Ga0207684_10000005 3300025910 Bacteria 736617
96 Ga0207684_10000021 3300025910 Bacteria 340887
97 Ga0207684_10000035 3300025910 Bacteria 289353
98 Ga0207684_10000084 3300025910 Bacteria 176027
99 Ga0207684_10017816 3300025910 Bacteria 6091
100 Ga0207684_10020072 3300025910 Bacteria 5709
101 Ga0207684_10095795 3300025910 Bacteria 2533
102 Ga0207684_10114683 3300025910 Bacteria 2307
103 Ga0207684_10122404 3300025910 Bacteria 2231
104 Ga0207707_10002484 3300025912 Bacteria 16590
105 Ga0207707_10015843 3300025912 Bacteria 6574
106 Ga0207695_10003967 3300025913 Bacteria 20446
107 Ga0207695_10010545 3300025913 Bacteria 11299
108 Ga0207660_10002892 3300025917 Bacteria 11221
109 Ga0207660_10010089 3300025917 Bacteria 6118
110 Ga0207652_10004426 3300025921 Bacteria 11449
111 Ga0207652_10034904 3300025921 Bacteria 4242
112 Ga0207646_10000031 3300025922 Bacteria 219144
113 Ga0207646_10000449 3300025922 Bacteria 54972
114 Ga0207646_10000655 3300025922 Bacteria 44749
115 Ga0207646_10002095 3300025922 Bacteria 23926
116 Ga0207646_10002114 3300025922 Bacteria 23793
117 Ga0207646_10002964 3300025922 Bacteria 19649
118 Ga0207646_10003454 3300025922 Bacteria 17843
119 Ga0207646_10009231 3300025922 Bacteria 9771
120 Ga0207646_10019544 3300025922 Bacteria 6293
121 Ga0207646_10031846 3300025922 Bacteria 4773
122 Ga0207646_10039526 3300025922 Bacteria 4246
123 Ga0207646_10068711 3300025922 Archaea 3164
124 Ga0207646_10236332 3300025922 Bacteria 1651
125 Ga0207694_10144234 3300025924 Bacteria 1916
126 Ga0207659_10054165 3300025926 Bacteria 2864
127 Ga0207664_10067659 3300025929 Bacteria 2867
128 Ga0207664_10197393 3300025929 Bacteria 1735
129 Ga0207712_10000923 3300025961 Bacteria 21242
130 Ga0207668_10107366 3300025972 Bacteria 2087
131 Ga0207708_10208379 3300026075 Bacteria 1562
132 Ga0207674_10047670 3300026116 Bacteria 4390
133 Ga0207675_100049522 3300026118 Bacteria 3921
134 Ga0207698_10009264 3300026142 Bacteria 6266
135 Ga0207698_10010388 3300026142 Bacteria 5977
136 Ga0209588_1000640 3300027671 Bacteria 8831
137 Ga0265336_10032667 3300028666 Bacteria 1614
138 Ga0265325_10000018 3300031241 Bacteria 128451
139 Ga0265313_10000132 3300031595 Bacteria 75917
140 Ga0307405_10000210 3300031731 Bacteria 21045
141 Ga0307410_10015087 3300031852 Bacteria 4571
142 Ga0307406_10002651 3300031901 Bacteria 9747
143 Ga0307409_100016873 3300031995 Bacteria 4847
144 Ga0307414_10009203 3300032004 Bacteria 5661
145 Ga0307414_10357052 3300032004 Bacteria 1256
146 Ga0307411_10002175 3300032005 Bacteria 8506
147 Ga0307415_100000964 3300032126 Bacteria 13217
148 Ga0373947_0050997 3300035725 Bacteria 2489
149 Ga0316584_0116711 3300036712 Unclassified 1996
150 Ga0395899_0179756 3300037312 Bacteria 1486
151 Ga0436364_0858362 3300037853 Bacteria 86877
152 Ga0436365_0452419 3300039437 Bacteria 1307
153 Ga0453684_0025975 3300044712 Bacteria 8481
154 Ga0453684_0053306 3300044712 Bacteria 5280
155 Ga0496121_0021439 3300048924 Bacteria 6327
156 Ga0496122_0012144 3300048925 Bacteria 8621
157 Ga0496124_0004256 3300048927 Bacteria 16844
158 Ga0496125_0001285 3300048928 Bacteria 37261
159 Ga0501032_0136288 3300049569 Bacteria 1618
160 Ga0501034_0100595 3300049571 Bacteria 2885
161 Ga0501043_0085405 3300049579 Bacteria 2480
162 nmdc:mga05p37_298233_c1 3300050507 Bacteria 1916
163 nmdc:mga08y16_77565_c1 3300050511 Bacteria 3464
164 nmdc:mga0n895_414701_c1 3300050512 Bacteria 1361
165 nmdc:mga0rr50_16381_c1 3300050513 Bacteria 4923
166 nmdc:mga0rr50_169982_c1 3300050513 Bacteria 1776
167 nmdc:mga08x19_1742_c1 3300050514 Bacteria 13404
168 nmdc:mga08x19_36616_c1 3300050514 Bacteria 3109
169 nmdc:mga08x19_38318_c1 3300050514 Bacteria 1238
170 nmdc:mga0a205_126973_c1 3300050515 Bacteria 2450
171 Ga0500562_020510 3300053108 Bacteria 1716
172 2808870128 2808606364 Bacteria 4465927
173 2883577400 2883577096 Bacteria 4709178
174 2894773515 2894772417 Bacteria 5305674
175 2921212168 2921208531 Bacteria 6745326
176 2929205691 2929199973 Bacteria 7260745
177 8055916369 8055909800 Bacteria 7278581
178 Ga0070683_100006586
179 JGI25406J46586_10005313
180 rootH2_10003113
181 Ga0065712_10177759
182 Ga0070683_100053941
183 Ga0070680_100049910
184 Ga0070682_100013982
185 Ga0070689_100096972
186 Ga0070661_100074341
187 Ga0070668_100030626
188 Ga0070669_100006749
189 Ga0070659_100225724
190 Ga0070703_10006639
191 Ga0070709_10074948
192 Ga0070714_100028529
193 Ga0070714_100111208
194 Ga0070701_10081143
195 Ga0070705_100005054
196 Ga0070700_100161744
197 Ga0070708_100003003
198 Ga0070708_100003847
199 Ga0070708_100022454
200 Ga0070708_100191739
201 Ga0070681_10283626
202 Ga0070706_100000059
203 Ga0070706_100000192
204 Ga0070706_100001501
205 Ga0070706_100002009
206 Ga0070706_100029815
207 Ga0070706_100057260
208 Ga0070707_100000024
209 Ga0070707_100003458
210 Ga0070707_100006053
211 Ga0070707_100007778
212 Ga0070707_100016706
213 Ga0070707_100018025
214 Ga0070707_100025063
215 Ga0070707_100027301
216 Ga0070698_100006767
217 Ga0070698_100023124
218 Ga0070698_100046286
219 Ga0070698_100089473
220 Ga0070699_100000046
221 Ga0070699_100000126
222 Ga0070699_100000366
223 Ga0070699_100002360
224 Ga0070699_100008458
225 Ga0070699_100012065
226 Ga0070699_100049131
227 Ga0070679_100007920
228 Ga0070684_100002410
229 Ga0070697_100000213
230 Ga0070697_100007236
231 Ga0070697_100014873
232 Ga0070697_100019185
233 Ga0070697_100037814
234 Ga0070697_100066643
235 Ga0070697_100137312
236 Ga0070695_100222893
237 Ga0070696_100016908
238 Ga0070704_100007932
239 Ga0070704_100174042
240 Ga0068855_100026178
241 Ga0068857_100067179
242 Ga0068852_100017334
243 Ga0068852_100026223
244 Ga0068861_100091145
245 Ga0068870_10009264
246 Ga0068858_100423122
247 Ga0068862_100001857
248 Ga0070717_10000065
249 Ga0070717_10146612
250 Ga0070716_100107176
251 Ga0075434_100127926
252 Ga0075436_100005909
253 Ga0075436_100214015
254 Ga0099794_10000174
255 Ga0105240_10017962
256 Ga0105238_10133842
257 Ga0105249_10000663
258 Ga0157373_10004565
259 Ga0157373_10020188
260 Ga0157371_10060075
261 Ga0157370_10010092
262 Ga0157369_10003672
263 Ga0157369_10100325
264 Ga0163162_10015232
265 Ga0157372_10002428
266 Ga0157372_10041305
267 Ga0157372_10160902
268 Ga0157380_10039344
269 Ga0213875_10003235
270 Ga0207653_10005178
271 Ga0207643_10001051
272 Ga0207684_10000005
273 Ga0207684_10000021
274 Ga0207684_10000035
275 Ga0207684_10000084
276 Ga0207684_10017816
277 Ga0207684_10020072
278 Ga0207684_10095795
279 Ga0207684_10114683
280 Ga0207684_10122404
281 Ga0207707_10002484
282 Ga0207707_10015843
283 Ga0207695_10003967
284 Ga0207695_10010545
285 Ga0207660_10002892
286 Ga0207660_10010089
287 Ga0207652_10004426
288 Ga0207652_10034904
289 Ga0207646_10000031
290 Ga0207646_10000449
291 Ga0207646_10000655
292 Ga0207646_10002095
293 Ga0207646_10002114
294 Ga0207646_10002964
295 Ga0207646_10003454
296 Ga0207646_10009231
297 Ga0207646_10019544
298 Ga0207646_10031846
299 Ga0207646_10039526
300 Ga0207646_10068711
301 Ga0207646_10236332
302 Ga0207694_10144234
303 Ga0207659_10054165
304 Ga0207664_10067659
305 Ga0207664_10197393
306 Ga0207712_10000923
307 Ga0207668_10107366
308 Ga0207708_10208379
309 Ga0207674_10047670
310 Ga0207675_100049522
311 Ga0207698_10009264
312 Ga0207698_10010388
313 Ga0209588_1000640
314 Ga0265336_10032667
315 Ga0265325_10000018
316 Ga0265313_10000132
317 Ga0307405_10000210
318 Ga0307410_10015087
319 Ga0307406_10002651
320 Ga0307409_100016873
321 Ga0307414_10009203
322 Ga0307414_10357052
323 Ga0307411_10002175
324 Ga0307415_100000964
325 Ga0373947_0050997
326 Ga0316584_0116711
327 Ga0395899_0179756
328 Ga0436364_0858362
329 Ga0436365_0452419
330 Ga0453684_0025975
331 Ga0453684_0053306
332 Ga0496121_0021439
333 Ga0496122_0012144
334 Ga0496124_0004256
335 Ga0496125_0001285
336 Ga0501032_0136288
337 Ga0501034_0100595
338 Ga0501043_0085405
339 nmdc:mga05p37_298233_c1
340 nmdc:mga08y16_77565_c1
341 nmdc:mga0n895_414701_c1
342 nmdc:mga0rr50_16381_c1
343 nmdc:mga0rr50_169982_c1
344 nmdc:mga08x19_1742_c1
345 nmdc:mga08x19_36616_c1
346 nmdc:mga08x19_38318_c1
347 nmdc:mga0a205_126973_c1
348 Ga0500562_020510
349 2808870128
350 2883577400
351 2894773515
352 2921212168
353 2929205691
354 8055916369

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

16

263

0.93

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

17

336

0.93

PF04321

RmlD_sub_bind

RmlD substrate binding domain

14

191

0.86

PF07993

NAD_binding_4

Male sterility protein

76

200

0.81

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

17

266

0.73

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

16

309

0.64

Structural Annotation

Top 5 Hits

ID Description Score Start End
6bi4-assembly2.cif.gz_B 2.9 angstrom resolution crystal structure of dtdp-glucose 4,6-dehydratase (rfbb) from bacillus anthracis str. ames in complex with nad. 0.9665 12 348
6bi4-assembly2.cif.gz_C 2.9 angstrom resolution crystal structure of dtdp-glucose 4,6-dehydratase (rfbb) from bacillus anthracis str. ames in complex with nad. 0.9656 12 348
1g1a-assembly1.cif.gz_A the crystal structure of dtdp-d-glucose 4,6-dehydratase (rmlb)from salmonella enterica serovar typhimurium 0.9596 12 349
6bi4-assembly2.cif.gz_B 2.9 angstrom resolution crystal structure of dtdp-glucose 4,6-dehydratase (rfbb) from bacillus anthracis str. ames in complex with nad. 0.9573 12 348
6bi4-assembly2.cif.gz_C 2.9 angstrom resolution crystal structure of dtdp-glucose 4,6-dehydratase (rfbb) from bacillus anthracis str. ames in complex with nad. 0.9565 12 348
ID Description Score Start End Superfamily
4egbB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9508 13 324 3.40.50.720
1bxkA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9452 12 328 3.40.50.720
6bwlA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9426 12 262 3.40.50.720
4egbB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9418 13 324 3.40.50.720
6dntA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9411 11 261 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A257R3E1-F1-model_v4 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) 0.9944 12 269 GO:0008460
GO:0009225
GO:0016491
AF-A0A7G2JXE4-F1-model_v4 NAD(P)-binding domain-containing protein 0.9941 68 225
AF-A0A829WI90-F1-model_v4 dTDP-glucose 4,6-dehydratase 0.9927 12 212
AF-A0A3E2B7E6-F1-model_v4 deleted 0.9918 68 203
AF-A0A352S166-F1-model_v4 dTDP-glucose 4,6-dehydratase 0.9903 38 203

Map