F269386

General Info

Members Datasets Scaffolds Average Seq Length
177 96 176 250

Family's Representative Sequence

Representative Sequence 3300003320|rootH2_10027286|rootH2_100272864
Length 296
Sequence MRLTQRFSGRFGLSGIGWFKREVSTVGSRFARCARFRVFPEPAICLGDGMILLGVNIDHCATVRQARYKEAPATVGGPVEPDPVLLALLSERAGADGITVHLREDRRHIQERDVWRLRESIQTRLNLEMACTPAMIEFALKLKPDSVCVVPESRQEVTTEGGLDVVGKRDQVKRCIDAMNGAGIIASLFIDPDEKQIALSAELKAPWIELHTGAYANSYYTPKRAAELSRLRDGAAQAHGLGLTVNAGHGINYVNITEVRTIAHLHELNIGHSIISRSLFTGIEEAVREMKARMNA

Samples

Sample ID Description Type Environment
1 2786546940 Opitutaceae bacterium EW11 Isolate Unclassified
2 3300001977 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5 Metagenome Rhizosphere
3 3300002244 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1 Metagenome Rhizosphere
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
9 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
10 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
11 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
12 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
13 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
14 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
15 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
16 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
17 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
18 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
19 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
20 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
21 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
22 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
34 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
35 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
36 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
37 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
38 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
39 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
40 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
41 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
42 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
43 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
44 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
45 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
46 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
47 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
48 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
49 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
50 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
51 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
52 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
53 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
54 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
55 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
56 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
57 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
58 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
59 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
60 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
61 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
62 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
63 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
64 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
65 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
66 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
67 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
68 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
69 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
70 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
71 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
72 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
73 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
74 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
75 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
76 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
81 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
90 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
91 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
92 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
93 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
94 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
96 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.44
Metatranscriptomes 0
Isolates 0.56

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.56
Nodule 0
Rhizoplane 0
Rhizosphere 95.48
Stem 0
Stem Tuber 0
Unclassified 3.95

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24746J21847_1000171 3300001977 Bacteria 8509
2 JGI24742J22300_10012737 3300002244 Bacteria 1404
3 rootH2_10027286 3300003320 Bacteria 10270
4 rootH2_10056365 3300003320 Bacteria 22939
5 rootH2_10066728 3300003320 Bacteria 10976
6 rootH1_10195402 3300003323 Bacteria 3960
7 rootH1_10217202 3300003323 Bacteria 3595
8 Ga0065712_10173499 3300005290 Bacteria 1211
9 Ga0070683_100059004 3300005329 Bacteria 3565
10 Ga0068869_100000006 3300005334 Bacteria 87287
11 Ga0068868_100019292 3300005338 Bacteria 5109
12 Ga0068868_100027248 3300005338 Bacteria 4360
13 Ga0070675_100413447 3300005354 Bacteria 1205
14 Ga0068867_100000055 3300005459 Bacteria 68858
15 Ga0068867_100001137 3300005459 Bacteria 18183
16 Ga0070664_100000668 3300005564 Bacteria 26190
17 Ga0068854_100584569 3300005578 Bacteria 951
18 Ga0068856_100002314 3300005614 Bacteria 19612
19 Ga0070717_10000003 3300006028 Bacteria 370103
20 Ga0097621_100010443 3300006237 Bacteria 6800
21 Ga0068871_100011476 3300006358 Bacteria 6500
22 Ga0068865_100000462 3300006881 Bacteria 22708
23 Ga0068865_100060646 3300006881 Bacteria 2649
24 Ga0105240_10180928 3300009093 Bacteria 2488
25 Ga0105243_10000190 3300009148 Bacteria 71519
26 Ga0157369_10143055 3300013105 Bacteria 2530
27 Ga0207649_10002016 3300025920 Bacteria 11557
28 Ga0207652_10003878 3300025921 Bacteria 12236
29 Ga0207709_10000225 3300025935 Bacteria 71548
30 Ga0207704_10001263 3300025938 Bacteria 11307
31 Ga0207689_10000034 3300025942 Bacteria 95262
32 Ga0207661_10088955 3300025944 Bacteria 2568
33 Ga0207679_10006675 3300025945 Bacteria 7306
34 Ga0207677_10009345 3300026023 Bacteria 5516
35 Ga0207677_10011198 3300026023 Bacteria 5104
36 Ga0207702_10000449 3300026078 Bacteria 46527
37 Ga0207648_10002556 3300026089 Bacteria 19507
38 Ga0207648_10004658 3300026089 Bacteria 14035
39 Ga0207683_10853121 3300026121 Bacteria 845
40 Ga0265337_1001207 3300028556 Bacteria 13151
41 Ga0265337_1013335 3300028556 Bacteria 2762
42 Ga0265337_1024365 3300028556 Bacteria 1852
43 Ga0265319_1000011 3300028563 Bacteria 184643
44 Ga0265319_1002208 3300028563 Bacteria 10834
45 Ga0265319_1010181 3300028563 Bacteria 3941
46 Ga0265319_1015167 3300028563 Bacteria 2998
47 Ga0265319_1021667 3300028563 Bacteria 2355
48 Ga0265318_10000422 3300028577 Bacteria 32552
49 Ga0265318_10000644 3300028577 Bacteria 24003
50 Ga0265318_10010132 3300028577 Bacteria 4118
51 Ga0265318_10011363 3300028577 Bacteria 3835
52 Ga0265318_10058808 3300028577 Bacteria 1434
53 Ga0265323_10019180 3300028653 Bacteria 2640
54 Ga0265323_10062103 3300028653 Bacteria 1297
55 Ga0265322_10001862 3300028654 Bacteria 6677
56 Ga0265336_10011582 3300028666 Bacteria 2991
57 Ga0265338_10000919 3300028800 Bacteria 49615
58 Ga0265338_10001708 3300028800 Bacteria 34832
59 Ga0265338_10007609 3300028800 Bacteria 13376
60 Ga0265324_10000442 3300029957 Bacteria 29455
61 Ga0265324_10027013 3300029957 Bacteria 2030
62 Ga0265330_10066839 3300031235 Bacteria 1558
63 Ga0265332_10066704 3300031238 Bacteria 1535
64 Ga0265328_10105501 3300031239 Bacteria 1046
65 Ga0265320_10000430 3300031240 Bacteria 33126
66 Ga0265320_10000858 3300031240 Bacteria 22965
67 Ga0265320_10002704 3300031240 Bacteria 12263
68 Ga0265320_10002914 3300031240 Bacteria 11715
69 Ga0265320_10004400 3300031240 Bacteria 9237
70 Ga0265320_10007465 3300031240 Bacteria 6782
71 Ga0265320_10021692 3300031240 Bacteria 3450
72 Ga0265329_10064284 3300031242 Bacteria 1161
73 Ga0265340_10021928 3300031247 Bacteria 3271
74 Ga0265339_10045882 3300031249 Bacteria 2404
75 Ga0265331_10015531 3300031250 Bacteria 4017
76 Ga0265327_10000318 3300031251 Bacteria 92042
77 Ga0265327_10001273 3300031251 Bacteria 33197
78 Ga0265327_10018534 3300031251 Bacteria 4310
79 Ga0265327_10025708 3300031251 Bacteria 3427
80 Ga0265327_10134840 3300031251 Bacteria 1158
81 Ga0265316_10017293 3300031344 Bacteria 6239
82 Ga0265316_10045972 3300031344 Bacteria 3462
83 Ga0265316_10062728 3300031344 Bacteria 2884
84 Ga0265316_10154774 3300031344 Bacteria 1716
85 Ga0307408_100000009 3300031548 Bacteria 426576
86 Ga0307408_100000770 3300031548 Bacteria 25772
87 Ga0307408_100003023 3300031548 Bacteria 11614
88 Ga0307408_100020227 3300031548 Bacteria 4490
89 Ga0265313_10000484 3300031595 Bacteria 41826
90 Ga0265313_10003264 3300031595 Bacteria 13320
91 Ga0307508_10000276 3300031616 Bacteria 63298
92 Ga0265314_10001831 3300031711 Bacteria 22853
93 Ga0265314_10005041 3300031711 Bacteria 12036
94 Ga0265314_10021246 3300031711 Bacteria 4995
95 Ga0265314_10037991 3300031711 Bacteria 3483
96 Ga0265342_10002267 3300031712 Bacteria 16808
97 Ga0265342_10003050 3300031712 Bacteria 14011
98 Ga0265342_10004750 3300031712 Bacteria 10564
99 Ga0307410_10000159 3300031852 Bacteria 24412
100 Ga0307406_10001059 3300031901 Bacteria 15305
101 Ga0307407_10000123 3300031903 Bacteria 24731
102 Ga0307407_10012917 3300031903 Bacteria 4034
103 Ga0307407_10078756 3300031903 Bacteria 1986
104 Ga0307412_10000080 3300031911 Bacteria 94834
105 Ga0307412_10267858 3300031911 Bacteria 1335
106 Ga0307409_100000062 3300031995 Bacteria 39648
107 Ga0307409_100000705 3300031995 Bacteria 14908
108 Ga0307416_100000018 3300032002 Bacteria 200227
109 Ga0307416_100000176 3300032002 Bacteria 35755
110 Ga0307414_10000006 3300032004 Bacteria 451918
111 Ga0307414_10315155 3300032004 Bacteria 1329
112 Ga0307411_10228609 3300032005 Bacteria 1448
113 Ga0373935_0052278 3300035692 Bacteria 2597
114 Ga0395905_0000064 3300037471 Bacteria 186494
115 Ga0450890_000092 3300042127 Bacteria 15055
116 Ga0439446_0092626 3300042156 Bacteria 947
117 Ga0450893_0000026 3300042532 Bacteria 14683
118 Ga0450893_0006880 3300042532 Bacteria 1842
119 Ga0451577_0000025 3300042876 Bacteria 403632
120 Ga0451577_0008780 3300042876 Bacteria 9791
121 Ga0451577_0015351 3300042876 Bacteria 7127
122 Ga0451577_0100931 3300042876 Bacteria 2578
123 Ga0451577_0188321 3300042876 Bacteria 1861
124 Ga0453683_0002405 3300044673 Bacteria 14587
125 Ga0453684_0000045 3300044712 Bacteria 582917
126 Ga0453684_0004396 3300044712 Bacteria 29816
127 Ga0453684_0045817 3300044712 Bacteria 5827
128 Ga0453684_0058515 3300044712 Bacteria 4977
129 Ga0453684_0175461 3300044712 Bacteria 2521
130 Ga0453684_0189480 3300044712 Bacteria 2407
131 Ga0453684_0211897 3300044712 Bacteria 2251
132 Ga0466968_0116430 3300044735 Bacteria 1206
133 Ga0451576_0000269 3300045051 Bacteria 127079
134 Ga0451576_0000396 3300045051 Bacteria 101504
135 Ga0451576_0003570 3300045051 Bacteria 21168
136 Ga0451576_0035632 3300045051 Bacteria 5278
137 Ga0451576_0097420 3300045051 Bacteria 3059
138 Ga0451576_0226686 3300045051 Bacteria 1951
139 Ga0451576_0565503 3300045051 Bacteria 1195
140 Ga0466967_0084910 3300045976 Bacteria 2865
141 Ga0495636_0012925 3300047318 Bacteria 3309
142 Ga0501031_0015788 3300049568 Bacteria 4903
143 Ga0501032_0001667 3300049569 Bacteria 17644
144 Ga0501032_0026635 3300049569 Bacteria 3974
145 Ga0501033_0005214 3300049570 Bacteria 10319
146 Ga0501033_0027569 3300049570 Bacteria 4270
147 Ga0501034_0022554 3300049571 Bacteria 6415
148 Ga0501036_0002704 3300049572 Bacteria 14002
149 Ga0501037_0456370 3300049573 Bacteria 871
150 Ga0501038_0114312 3300049574 Bacteria 2232
151 Ga0501039_0022297 3300049575 Bacteria 4861
152 Ga0501042_0073405 3300049578 Bacteria 2447
153 Ga0501043_0021575 3300049579 Bacteria 5050
154 Ga0501043_0275669 3300049579 Bacteria 1290
155 Ga0501043_0309128 3300049579 Bacteria 1206
156 Ga0501046_0090275 3300049580 Bacteria 2357
157 Ga0501047_0025149 3300049581 Bacteria 5720
158 Ga0501047_0120335 3300049581 Bacteria 2507
159 Ga0501048_0107501 3300049582 Bacteria 1969
160 Ga0501070_0676929 3300049586 Bacteria 817
161 Ga0501073_0132652 3300049589 Bacteria 1727
162 Ga0501073_0151192 3300049589 Bacteria 1609
163 Ga0501243_000967 3300049675 Bacteria 4038
164 Ga0501080_0039183 3300049742 Bacteria 4423
165 Ga0501083_0001505 3300049744 Bacteria 15924
166 Ga0501083_0005962 3300049744 Bacteria 8627
167 Ga0501083_0013807 3300049744 Bacteria 5648
168 Ga0501035_0005599 3300049822 Bacteria 11862
169 Ga0501035_0098236 3300049822 Bacteria 2570
170 Ga0501035_0118369 3300049822 Bacteria 2317
171 Ga0501035_0171879 3300049822 Bacteria 1872
172 Ga0501044_0000188 3300049823 Bacteria 77610
173 Ga0501044_0002225 3300049823 Bacteria 22224
174 Ga0501044_0019057 3300049823 Bacteria 7346
175 Ga0501044_0072038 3300049823 Bacteria 3513
176 Ga0500559_0001532 3300053136 Bacteria 12965

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300042876 Ga0451577_0008780 Ga0451577_0008780_7832_8566 240
2 3300044712 Ga0453684_0045817 Ga0453684_0045817_75_809 240
3 iso_pu_bacteria 2786546940 2788433974 240
4 3300031251 Ga0265327_10134840 Ga0265327_101348401 243
5 3300003323 rootH1_10195402 rootH1_101954022 244
6 3300005329 Ga0070683_100059004 Ga0070683_1000590043 244
7 3300005334 Ga0068869_100000006 Ga0068869_10000000644 244
8 3300005338 Ga0068868_100027248 Ga0068868_1000272483 244
9 3300005459 Ga0068867_100001137 Ga0068867_10000113714 244
10 3300005614 Ga0068856_100002314 Ga0068856_1000023147 244
11 3300006028 Ga0070717_10000003 Ga0070717_10000003266 244
12 3300006237 Ga0097621_100010443 Ga0097621_1000104434 244
13 3300006358 Ga0068871_100011476 Ga0068871_1000114763 244
14 3300006881 Ga0068865_100000462 Ga0068865_10000046222 244
15 3300025921 Ga0207652_10003878 Ga0207652_100038784 244
16 3300025938 Ga0207704_10001263 Ga0207704_100012635 244
17 3300025942 Ga0207689_10000034 Ga0207689_1000003449 244
18 3300025944 Ga0207661_10088955 Ga0207661_100889553 244
19 3300026023 Ga0207677_10009345 Ga0207677_100093456 244
20 3300026078 Ga0207702_10000449 Ga0207702_1000044914 244
21 3300026089 Ga0207648_10004658 Ga0207648_100046586 244
22 3300026121 Ga0207683_10853121 Ga0207683_108531211 244
23 3300028556 Ga0265337_1001207 Ga0265337_10012079 244
24 3300028556 Ga0265337_1013335 Ga0265337_10133353 244
25 3300028563 Ga0265319_1002208 Ga0265319_10022086 244
26 3300028563 Ga0265319_1010181 Ga0265319_10101813 244
27 3300028563 Ga0265319_1015167 Ga0265319_10151671 244
28 3300028563 Ga0265319_1021667 Ga0265319_10216672 244
29 3300028577 Ga0265318_10000422 Ga0265318_1000042221 244
30 3300028577 Ga0265318_10010132 Ga0265318_100101324 244
31 3300028577 Ga0265318_10011363 Ga0265318_100113634 244
32 3300028577 Ga0265318_10058808 Ga0265318_100588082 244
33 3300028653 Ga0265323_10062103 Ga0265323_100621031 244
34 3300028666 Ga0265336_10011582 Ga0265336_100115823 244
35 3300028800 Ga0265338_10000919 Ga0265338_1000091916 244
36 3300028800 Ga0265338_10001708 Ga0265338_1000170844 244
37 3300029957 Ga0265324_10000442 Ga0265324_1000044210 244
38 3300029957 Ga0265324_10027013 Ga0265324_100270134 244
39 3300031240 Ga0265320_10000430 Ga0265320_1000043010 244
40 3300031240 Ga0265320_10004400 Ga0265320_100044002 244
41 3300031240 Ga0265320_10007465 Ga0265320_100074655 244
42 3300031240 Ga0265320_10021692 Ga0265320_100216924 244
43 3300031247 Ga0265340_10021928 Ga0265340_100219284 244
44 3300031249 Ga0265339_10045882 Ga0265339_100458823 244
45 3300031251 Ga0265327_10000318 Ga0265327_1000031877 244
46 3300031251 Ga0265327_10018534 Ga0265327_100185344 244
47 3300031251 Ga0265327_10025708 Ga0265327_100257081 244
48 3300031344 Ga0265316_10045972 Ga0265316_100459723 244
49 3300031344 Ga0265316_10062728 Ga0265316_100627282 244
50 3300031548 Ga0307408_100000009 Ga0307408_10000000965 244
51 3300031595 Ga0265313_10000484 Ga0265313_1000048434 244
52 3300031595 Ga0265313_10003264 Ga0265313_100032649 244
53 3300031616 Ga0307508_10000276 Ga0307508_1000027644 244
54 3300031711 Ga0265314_10005041 Ga0265314_100050419 244
55 3300031711 Ga0265314_10021246 Ga0265314_100212464 244
56 3300031711 Ga0265314_10037991 Ga0265314_100379914 244
57 3300031712 Ga0265342_10003050 Ga0265342_1000305012 244
58 3300031712 Ga0265342_10004750 Ga0265342_1000475011 244
59 3300031852 Ga0307410_10000159 Ga0307410_1000015921 244
60 3300031903 Ga0307407_10012917 Ga0307407_100129174 244
61 3300031995 Ga0307409_100000062 Ga0307409_10000006218 244
62 3300032002 Ga0307416_100000018 Ga0307416_100000018140 244
63 3300032005 Ga0307411_10228609 Ga0307411_102286091 244
64 3300035692 Ga0373935_0052278 Ga0373935_0052278_752_1495 244
65 3300037471 Ga0395905_0000064 Ga0395905_0000064_37368_38111 244
66 3300042156 Ga0439446_0092626 Ga0439446_0092626_10_753 244
67 3300042876 Ga0451577_0000025 Ga0451577_0000025_163288_164031 244
68 3300044712 Ga0453684_0058515 Ga0453684_0058515_1818_2561 244
69 3300044712 Ga0453684_0175461 Ga0453684_0175461_1571_2317 244
70 3300044712 Ga0453684_0189480 Ga0453684_0189480_744_1487 244
71 3300044735 Ga0466968_0116430 Ga0466968_0116430_308_1051 244
72 3300045051 Ga0451576_0035632 Ga0451576_0035632_3045_3791 244
73 3300045051 Ga0451576_0097420 Ga0451576_0097420_1567_2310 244
74 3300045051 Ga0451576_0226686 Ga0451576_0226686_23_769 244
75 3300045051 Ga0451576_0565503 Ga0451576_0565503_28_771 244
76 3300045976 Ga0466967_0084910 Ga0466967_0084910_1111_1854 244
77 3300047318 Ga0495636_0012925 Ga0495636_0012925_153_896 244
78 3300049568 Ga0501031_0015788 Ga0501031_0015788_567_1313 244
79 3300049569 Ga0501032_0001667 Ga0501032_0001667_4080_4826 244
80 3300049570 Ga0501033_0005214 Ga0501033_0005214_3215_3958 244
81 3300049570 Ga0501033_0027569 Ga0501033_0027569_3499_4245 244
82 3300049571 Ga0501034_0022554 Ga0501034_0022554_1273_2019 244
83 3300049572 Ga0501036_0002704 Ga0501036_0002704_11365_12111 244
84 3300049573 Ga0501037_0456370 Ga0501037_0456370_76_819 244
85 3300049574 Ga0501038_0114312 Ga0501038_0114312_1385_2131 244
86 3300049575 Ga0501039_0022297 Ga0501039_0022297_1117_1863 244
87 3300049578 Ga0501042_0073405 Ga0501042_0073405_700_1446 244
88 3300049579 Ga0501043_0021575 Ga0501043_0021575_643_1389 244
89 3300049579 Ga0501043_0275669 Ga0501043_0275669_490_1233 244
90 3300049579 Ga0501043_0309128 Ga0501043_0309128_133_879 244
91 3300049580 Ga0501046_0090275 Ga0501046_0090275_1473_2219 244
92 3300049581 Ga0501047_0025149 Ga0501047_0025149_877_1620 244
93 3300049581 Ga0501047_0120335 Ga0501047_0120335_1095_1841 244
94 3300049582 Ga0501048_0107501 Ga0501048_0107501_1195_1941 244
95 3300049586 Ga0501070_0676929 Ga0501070_0676929_27_770 244
96 3300049589 Ga0501073_0132652 Ga0501073_0132652_185_931 244
97 3300049742 Ga0501080_0039183 Ga0501080_0039183_910_1653 244
98 3300049744 Ga0501083_0001505 Ga0501083_0001505_6965_7708 244
99 3300049744 Ga0501083_0005962 Ga0501083_0005962_5153_5896 244
100 3300049822 Ga0501035_0005599 Ga0501035_0005599_7728_8471 244
101 3300049822 Ga0501035_0098236 Ga0501035_0098236_26_772 244
102 3300049822 Ga0501035_0171879 Ga0501035_0171879_1011_1754 244
103 3300049823 Ga0501044_0002225 Ga0501044_0002225_11965_12708 244
104 3300049823 Ga0501044_0019057 Ga0501044_0019057_3014_3757 244
105 3300049823 Ga0501044_0072038 Ga0501044_0072038_26_772 244
106 3300003320 rootH2_10027286 rootH2_100272864 245
107 3300003320 rootH2_10066728 rootH2_100667285 245
108 3300028556 Ga0265337_1024365 Ga0265337_10243652 245
109 3300031238 Ga0265332_10066704 Ga0265332_100667041 245
110 3300045051 Ga0451576_0000269 Ga0451576_0000269_32956_33702 245
111 3300049822 Ga0501035_0118369 Ga0501035_0118369_865_1716 245
112 3300049823 Ga0501044_0000188 Ga0501044_0000188_50877_51728 245
113 3300005338 Ga0068868_100019292 Ga0068868_1000192923 246
114 3300009093 Ga0105240_10180928 Ga0105240_101809282 246
115 3300013105 Ga0157369_10143055 Ga0157369_101430552 246
116 3300026023 Ga0207677_10011198 Ga0207677_100111984 246
117 3300028563 Ga0265319_1000011 Ga0265319_100001174 246
118 3300028577 Ga0265318_10000644 Ga0265318_1000064412 246
119 3300028654 Ga0265322_10001862 Ga0265322_100018623 246
120 3300031239 Ga0265328_10105501 Ga0265328_101055012 246
121 3300031240 Ga0265320_10002704 Ga0265320_100027046 246
122 3300031240 Ga0265320_10002914 Ga0265320_1000291410 246
123 3300031242 Ga0265329_10064284 Ga0265329_100642842 246
124 3300031344 Ga0265316_10017293 Ga0265316_100172933 246
125 3300031711 Ga0265314_10001831 Ga0265314_1000183115 246
126 3300031712 Ga0265342_10002267 Ga0265342_1000226716 246
127 3300042876 Ga0451577_0015351 Ga0451577_0015351_427_1191 246
128 3300042876 Ga0451577_0100931 Ga0451577_0100931_265_1014 246
129 3300042876 Ga0451577_0188321 Ga0451577_0188321_11_760 246
130 3300044673 Ga0453683_0002405 Ga0453683_0002405_2325_3077 246
131 3300044712 Ga0453684_0000045 Ga0453684_0000045_496410_497168 246
132 3300044712 Ga0453684_0004396 Ga0453684_0004396_7776_8525 246
133 3300044712 Ga0453684_0211897 Ga0453684_0211897_520_1284 246
134 3300049675 Ga0501243_000967 Ga0501243_000967_999_1748 246
135 3300028653 Ga0265323_10019180 Ga0265323_100191802 247
136 3300028800 Ga0265338_10007609 Ga0265338_100076095 247
137 3300031235 Ga0265330_10066839 Ga0265330_100668392 247
138 3300031344 Ga0265316_10154774 Ga0265316_101547742 247
139 3300031548 Ga0307408_100003023 Ga0307408_1000030236 247
140 3300031548 Ga0307408_100020227 Ga0307408_1000202275 247
141 3300031901 Ga0307406_10001059 Ga0307406_100010595 247
142 3300031995 Ga0307409_100000705 Ga0307409_1000007052 247
143 3300032004 Ga0307414_10000006 Ga0307414_10000006302 247
144 3300053136 Ga0500559_0001532 Ga0500559_0001532_9802_10548 247
145 3300003323 rootH1_10217202 rootH1_102172024 248
146 3300005354 Ga0070675_100413447 Ga0070675_1004134471 248
147 3300031240 Ga0265320_10000858 Ga0265320_1000085825 248
148 3300045051 Ga0451576_0000396 Ga0451576_0000396_81438_82196 248
149 3300045051 Ga0451576_0003570 Ga0451576_0003570_17184_17942 248
150 3300049589 Ga0501073_0151192 Ga0501073_0151192_84_860 248
151 3300049744 Ga0501083_0013807 Ga0501083_0013807_4316_5068 248
152 3300031903 Ga0307407_10078756 Ga0307407_100787562 249
153 3300032004 Ga0307414_10315155 Ga0307414_103151552 249
154 3300031250 Ga0265331_10015531 Ga0265331_100155312 251
155 3300031251 Ga0265327_10001273 Ga0265327_1000127321 251
156 3300001977 JGI24746J21847_1000171 JGI24746J21847_10001714 252
157 3300002244 JGI24742J22300_10012737 JGI24742J22300_100127372 252
158 3300003320 rootH2_10056365 rootH2_100563658 252
159 3300005290 Ga0065712_10173499 Ga0065712_101734992 252
160 3300005459 Ga0068867_100000055 Ga0068867_10000005549 252
161 3300005564 Ga0070664_100000668 Ga0070664_10000066814 252
162 3300005578 Ga0068854_100584569 Ga0068854_1005845691 252
163 3300006881 Ga0068865_100060646 Ga0068865_1000606461 252
164 3300009148 Ga0105243_10000190 Ga0105243_1000019049 252
165 3300025920 Ga0207649_10002016 Ga0207649_1000201612 252
166 3300025935 Ga0207709_10000225 Ga0207709_1000022515 252
167 3300025945 Ga0207679_10006675 Ga0207679_1000667511 252
168 3300026089 Ga0207648_10002556 Ga0207648_100025566 252
169 3300031548 Ga0307408_100000770 Ga0307408_10000077018 252
170 3300031903 Ga0307407_10000123 Ga0307407_100001234 252
171 3300031911 Ga0307412_10000080 Ga0307412_1000008075 252
172 3300031911 Ga0307412_10267858 Ga0307412_102678582 252
173 3300032002 Ga0307416_100000176 Ga0307416_10000017618 252
174 3300042127 Ga0450890_000092 Ga0450890_000092_11397_12158 252
175 3300042532 Ga0450893_0000026 Ga0450893_0000026_8062_8820 252
176 3300042532 Ga0450893_0006880 Ga0450893_0006880_323_1084 252
177 3300049569 Ga0501032_0026635 Ga0501032_0026635_1806_2564 252

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03740

PdxJ

Pyridoxal phosphate biosynthesis protein PdxJ

52

294

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
5dlc-assembly2.cif.gz_D x-ray crystal structure of a pyridoxine 5-prime-phosphate synthase from pseudomonas aeruginosa 0.9738 1 244
3f4n-assembly5.cif.gz_B crystal structure of pyridoxal phosphate biosynthetic protein pdxj from yersinia pestis 0.9685 1 243
3f4n-assembly2.cif.gz_C crystal structure of pyridoxal phosphate biosynthetic protein pdxj from yersinia pestis 0.9621 1 243
3gk0-assembly1.cif.gz_A crystal structure of pyridoxal phosphate biosynthetic protein from burkholderia pseudomallei 0.9608 2 244
1ixo-assembly3.cif.gz_A-2 enzyme-analogue substrate complex of pyridoxine 5'-phosphate synthase 0.9575 1 243
ID Description Score Start End Superfamily
3gk0A00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9608 2 244 3.20.20.70
3o6cA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8947 3 243 3.20.20.70
3o6cA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.854 3 243 3.20.20.70
1kv8B00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8024 1 246 3.20.20.70
1kv8B00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.7923 1 246 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A3B9G835-F1-model_v4 Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2) 0.9931 1 247 GO:0005829
GO:0008615
GO:0033856
AF-B2URE7-F1-model_v4 Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2) 0.9904 3 247 GO:0005829
GO:0008615
GO:0033856
AF-A0A7C5H1G5-F1-model_v4 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) 0.99 89 247 GO:0005829
GO:0008615
GO:0033856
AF-A0A2V5YYM3-F1-model_v4 Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2) 0.9887 1 248 GO:0005829
GO:0008615
GO:0033856
AF-A0A4Q2X6W5-F1-model_v4 Pyridoxine 5'-phosphate synthase 0.9881 113 248 GO:0005829
GO:0008615
GO:0033856

Feature Viewer

pLDDT pTM Quality
91.76 0.89 High
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Predicted Structure (AlphaFold2)

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