F268673

General Info

Members Datasets Scaffolds Average Seq Length
176 117 352 159

Family's Representative Sequence

Representative Sequence 3300037312|Ga0395899_0176502|Ga0395899_0176502_298_846
Length 182
Sequence LTSSRSEHVTLAKDFPARAAPSDMDERAREIERVYRERYVGFRNVLATVTGDYESARDAVQEGFARAYRERRRFRGEAPIEAWIFRIALRAALAARRNGAEPLGEHDVPSALVDEARVPELAAALRELPPRRRLVVFLRYFADLSYADIATALAISEGTVAASLAQAHDALREALRPEEVRQ

Samples

Sample ID Description Type Environment
1 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
11 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
12 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
13 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
16 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
20 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
21 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
22 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
23 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
24 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
26 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
27 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
28 3300012491 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.8.old.040610 Metagenome Rhizosphere
29 3300012503 Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.5.old.080610_R Metagenome Rhizosphere
30 3300012507 Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610 Metagenome Rhizosphere
31 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
32 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
33 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
34 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
35 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
36 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
37 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
38 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
39 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
40 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
41 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
42 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
61 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
62 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
63 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
64 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
65 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
66 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
67 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
68 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
69 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
70 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
71 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
72 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
73 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
74 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
75 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
76 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
77 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
78 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
79 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
80 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
81 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
82 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
83 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
84 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
85 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
86 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
87 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
88 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
89 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
90 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
91 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
92 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
93 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
94 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
95 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
96 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
97 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
98 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
99 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
100 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
101 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
102 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
103 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
104 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
105 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
106 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
109 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
110 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
111 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
112 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
113 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
114 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
115 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
116 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
117 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.02
Metatranscriptomes 3.98
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 3.98
Rhizosphere 96.02
Stem 0
Stem Tuber 0
Unclassified 17.61

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0395899_0176502 3300037312 Unclassified 1502
2 Ga0070683_100055571 3300005329 Bacteria 3674
3 Ga0070683_100272937 3300005329 Unclassified 1608
4 Ga0070680_100285455 3300005336 Bacteria 1399
5 Ga0070680_101202907 3300005336 Unclassified 655
6 Ga0070682_101018727 3300005337 Unclassified 688
7 Ga0070682_101691241 3300005337 Bacteria 549
8 Ga0070660_100044677 3300005339 Bacteria 3390
9 Ga0070661_100008027 3300005344 Bacteria 7290
10 Ga0070661_100972006 3300005344 Unclassified 703
11 Ga0070710_10154420 3300005437 Bacteria 1418
12 Ga0070711_100100094 3300005439 Bacteria 2107
13 Ga0070681_10397788 3300005458 Bacteria 1289
14 Ga0070706_100558634 3300005467 Bacteria 1064
15 Ga0070679_100006555 3300005530 Bacteria 10846
16 Ga0070684_100183295 3300005535 Bacteria 1904
17 Ga0068853_100364391 3300005539 Bacteria 1347
18 Ga0068855_100060630 3300005563 Bacteria 4424
19 Ga0068855_100165684 3300005563 Bacteria 2506
20 Ga0068857_100827131 3300005577 Bacteria 885
21 Ga0068854_100545456 3300005578 Bacteria 983
22 Ga0068856_100170447 3300005614 Bacteria 2189
23 Ga0068856_100344970 3300005614 Bacteria 1507
24 Ga0068852_100003999 3300005616 Bacteria 10364
25 Ga0068852_100145804 3300005616 Bacteria 2196
26 Ga0081455_10035429 3300005937 Bacteria 4459
27 Ga0081455_10041612 3300005937 Unclassified 4039
28 Ga0070717_10004573 3300006028 Bacteria 10015
29 Ga0070717_10111269 3300006028 Bacteria 2336
30 Ga0070716_101398348 3300006173 Unclassified 569
31 Ga0070712_100054223 3300006175 Bacteria 2802
32 Ga0105240_10088202 3300009093 Bacteria 3797
33 Ga0105240_10223048 3300009093 Bacteria 2195
34 Ga0111539_12065613 3300009094 Bacteria 661
35 Ga0105237_10020531 3300009545 Bacteria 6807
36 Ga0105237_10052197 3300009545 Bacteria 4105
37 Ga0105238_10043181 3300009551 Bacteria 4562
38 Ga0105238_10055354 3300009551 Bacteria 3982
39 Ga0105239_10132499 3300010375 Bacteria 2773
40 Ga0157329_1008413 3300012491 Unclassified 771
41 Ga0157313_1001502 3300012503 Bacteria 1270
42 Ga0157342_1007493 3300012507 Unclassified 1060
43 Ga0157371_10059407 3300013102 Bacteria 2710
44 Ga0157370_10043098 3300013104 Bacteria 4345
45 Ga0157369_10032954 3300013105 Bacteria 5694
46 Ga0157372_10050759 3300013307 Bacteria 4614
47 Ga0157372_10100029 3300013307 Bacteria 3308
48 Ga0182008_10120335 3300014497 Bacteria 1305
49 Ga0157376_11284255 3300014969 Bacteria 762
50 Ga0197907_10109201 3300020069 Bacteria 2678
51 Ga0206356_11038876 3300020070 Bacteria 1422
52 Ga0206356_11619810 3300020070 Unclassified 1724
53 Ga0206350_10381503 3300020080 Bacteria 551
54 Ga0206354_10032093 3300020081 Bacteria 3865
55 Ga0206354_10630183 3300020081 Bacteria 860
56 Ga0224712_10094828 3300022467 Bacteria 1256
57 Ga0207684_10262514 3300025910 Bacteria 1490
58 Ga0207695_10051488 3300025913 Bacteria 4323
59 Ga0207671_10087069 3300025914 Bacteria 2349
60 Ga0207693_10034994 3300025915 Bacteria 3962
61 Ga0207660_10302205 3300025917 Bacteria 1274
62 Ga0207660_11230088 3300025917 Unclassified 609
63 Ga0207657_10037977 3300025919 Bacteria 4294
64 Ga0207649_10078778 3300025920 Bacteria 2127
65 Ga0207652_10014332 3300025921 Bacteria 6420
66 Ga0207694_10128624 3300025924 Bacteria 2028
67 Ga0207664_10011493 3300025929 Bacteria 6297
68 Ga0207665_11128623 3300025939 Unclassified 625
69 Ga0207661_10166079 3300025944 Bacteria 1918
70 Ga0207667_10052370 3300025949 Bacteria 4299
71 Ga0207667_10162518 3300025949 Bacteria 2296
72 Ga0207640_10302580 3300025981 Bacteria 1266
73 Ga0207639_10069414 3300026041 Bacteria 2749
74 Ga0207702_10039657 3300026078 Bacteria 3948
75 Ga0207674_10833378 3300026116 Bacteria 890
76 Ga0207698_10206104 3300026142 Unclassified 1765
77 Ga0265318_10040046 3300028577 Bacteria 1786
78 Ga0265338_10003476 3300028800 Bacteria 22134
79 Ga0265338_10014324 3300028800 Bacteria 8832
80 Ga0265338_10099591 3300028800 Bacteria 2373
81 Ga0265338_10172156 3300028800 Bacteria 1659
82 Ga0265320_10110310 3300031240 Archaea 1261
83 Ga0265325_10203717 3300031241 Bacteria 911
84 Ga0265339_10017055 3300031249 Bacteria 4307
85 Ga0265339_10176866 3300031249 Bacteria 1065
86 Ga0265331_10059462 3300031250 Unclassified 1807
87 Ga0265327_10007902 3300031251 Bacteria 8062
88 Ga0265316_10023607 3300031344 Bacteria 5164
89 Ga0265313_10012160 3300031595 Bacteria 5289
90 Ga0265313_10041781 3300031595 Bacteria 2257
91 Ga0265314_10009890 3300031711 Bacteria 8002
92 Ga0265314_10030891 3300031711 Bacteria 3961
93 Ga0395900_0077152 3300037418 Bacteria 3423
94 Ga0395900_0824574 3300037418 Unclassified 854
95 Ga0395900_1823902 3300037418 Unclassified 519
96 Ga0395898_0021603 3300037466 Bacteria 6523
97 Ga0395898_0534193 3300037466 Bacteria 1114
98 Ga0395905_0055938 3300037471 Unclassified 3693
99 Ga0395901_0022712 3300038443 Bacteria 6432
100 Ga0395901_0120143 3300038443 Bacteria 2762
101 Ga0395901_0148917 3300038443 Bacteria 2460
102 Ga0395901_0376633 3300038443 Bacteria 1461
103 Ga0395901_0495364 3300038443 Bacteria 1245
104 Ga0395901_0644132 3300038443 Unclassified 1064
105 Ga0395901_1177207 3300038443 Unclassified 733
106 Ga0466966_0056580 3300044684 Unclassified 2481
107 Ga0466961_0010486 3300044693 Bacteria 5909
108 Ga0466961_0030487 3300044693 Unclassified 3466
109 Ga0466963_0000178 3300044694 Bacteria 26311
110 Ga0466963_0003317 3300044694 Bacteria 9186
111 Ga0466963_0004200 3300044694 Bacteria 8348
112 Ga0466963_0011200 3300044694 Bacteria 5459
113 Ga0466963_0270483 3300044694 Bacteria 1194
114 Ga0466964_0003319 3300044706 Bacteria 5865
115 Ga0466964_0003804 3300044706 Bacteria 5536
116 Ga0466964_0068100 3300044706 Bacteria 1498
117 Ga0466971_0003536 3300044719 Bacteria 6679
118 Ga0466968_0202709 3300044735 Bacteria 930
119 Ga0466957_0007912 3300044842 Bacteria 6028
120 Ga0466957_0011172 3300044842 Bacteria 5172
121 Ga0466957_0372561 3300044842 Unclassified 972
122 Ga0466960_0184323 3300044901 Unclassified 1133
123 Ga0466959_0015303 3300045049 Bacteria 5586
124 Ga0466958_0008809 3300045836 Bacteria 5605
125 Ga0466958_0018380 3300045836 Bacteria 4056
126 Ga0466967_0011098 3300045976 Bacteria 6805
127 Ga0466967_0036063 3300045976 Bacteria 4218
128 Ga0466967_0048852 3300045976 Bacteria 3698
129 Ga0466967_0152145 3300045976 Unclassified 2164
130 Ga0466967_0306444 3300045976 Bacteria 1529
131 Ga0466967_0363686 3300045976 Bacteria 1402
132 Ga0466967_0391128 3300045976 Unclassified 1351
133 Ga0466967_1151667 3300045976 Bacteria 773
134 Ga0495592_0904281 3300046454 Unclassified 519
135 Ga0495651_0009428 3300046462 Bacteria 7498
136 Ga0495584_0300231 3300046491 Bacteria 816
137 Ga0495584_0312687 3300046491 Bacteria 798
138 Ga0495608_0711774 3300046511 Bacteria 597
139 Ga0495618_0363861 3300046514 Bacteria 890
140 Ga0495628_0238238 3300046516 Bacteria 1362
141 Ga0495652_0007982 3300046529 Bacteria 9710
142 Ga0495645_0014453 3300046543 Bacteria 5600
143 Ga0495645_0145471 3300046543 Bacteria 1651
144 Ga0495635_0788521 3300046663 Bacteria 613
145 Ga0495599_0027697 3300046678 Unclassified 3551
146 Ga0495623_0207786 3300046679 Bacteria 1122
147 Ga0495680_0384299 3300047322 Bacteria 972
148 Ga0495684_0304891 3300047471 Bacteria 1143
149 Ga0495602_0011277 3300048088 Bacteria 9244
150 Ga0496100_0298217 3300048903 Bacteria 1206
151 Ga0496101_0216864 3300048904 Bacteria 1484
152 Ga0496102_0228631 3300048905 Bacteria 1754
153 Ga0496109_0178015 3300048912 Bacteria 1997
154 Ga0496111_0685464 3300048914 Bacteria 746
155 Ga0496114_0166837 3300048917 Bacteria 1917
156 Ga0496115_0034040 3300048918 Unclassified 4026
157 Ga0501046_0527675 3300049580 Archaea 843
158 Ga0501047_0018410 3300049581 Bacteria 6696
159 Ga0501067_0011957 3300049583 Bacteria 4809
160 Ga0501067_0078122 3300049583 Bacteria 1834
161 Ga0501069_0005640 3300049585 Bacteria 6517
162 Ga0501069_0076362 3300049585 Bacteria 1883
163 Ga0501069_0154749 3300049585 Archaea 1318
164 Ga0501069_0522611 3300049585 Unclassified 709
165 Ga0501070_0063441 3300049586 Archaea 3060
166 Ga0501073_0689180 3300049589 Archaea 705
167 Ga0501074_0016823 3300049590 Bacteria 5307
168 Ga0501079_0079834 3300049741 Archaea 2530
169 Ga0495601_0591033 3300053077 Unclassified 713
170 Ga0495601_0745793 3300053077 Archaea 623
171 Ga0495601_0815434 3300053077 Bacteria 592
172 Ga0495595_0370299 3300053084 Archaea 724
173 Ga0466962_0001973 3300061719 Bacteria 9682
174 Ga0466962_0011918 3300061719 Bacteria 4183
175 Ga0466962_0020801 3300061719 Bacteria 3153
176 Ga0530510_0376514 3300061734 Unclassified 1068
177 Ga0395899_0176502
178 Ga0070683_100055571
179 Ga0070683_100272937
180 Ga0070680_100285455
181 Ga0070680_101202907
182 Ga0070682_101018727
183 Ga0070682_101691241
184 Ga0070660_100044677
185 Ga0070661_100008027
186 Ga0070661_100972006
187 Ga0070710_10154420
188 Ga0070711_100100094
189 Ga0070681_10397788
190 Ga0070706_100558634
191 Ga0070679_100006555
192 Ga0070684_100183295
193 Ga0068853_100364391
194 Ga0068855_100060630
195 Ga0068855_100165684
196 Ga0068857_100827131
197 Ga0068854_100545456
198 Ga0068856_100170447
199 Ga0068856_100344970
200 Ga0068852_100003999
201 Ga0068852_100145804
202 Ga0081455_10035429
203 Ga0081455_10041612
204 Ga0070717_10004573
205 Ga0070717_10111269
206 Ga0070716_101398348
207 Ga0070712_100054223
208 Ga0105240_10088202
209 Ga0105240_10223048
210 Ga0111539_12065613
211 Ga0105237_10020531
212 Ga0105237_10052197
213 Ga0105238_10043181
214 Ga0105238_10055354
215 Ga0105239_10132499
216 Ga0157329_1008413
217 Ga0157313_1001502
218 Ga0157342_1007493
219 Ga0157371_10059407
220 Ga0157370_10043098
221 Ga0157369_10032954
222 Ga0157372_10050759
223 Ga0157372_10100029
224 Ga0182008_10120335
225 Ga0157376_11284255
226 Ga0197907_10109201
227 Ga0206356_11038876
228 Ga0206356_11619810
229 Ga0206350_10381503
230 Ga0206354_10032093
231 Ga0206354_10630183
232 Ga0224712_10094828
233 Ga0207684_10262514
234 Ga0207695_10051488
235 Ga0207671_10087069
236 Ga0207693_10034994
237 Ga0207660_10302205
238 Ga0207660_11230088
239 Ga0207657_10037977
240 Ga0207649_10078778
241 Ga0207652_10014332
242 Ga0207694_10128624
243 Ga0207664_10011493
244 Ga0207665_11128623
245 Ga0207661_10166079
246 Ga0207667_10052370
247 Ga0207667_10162518
248 Ga0207640_10302580
249 Ga0207639_10069414
250 Ga0207702_10039657
251 Ga0207674_10833378
252 Ga0207698_10206104
253 Ga0265318_10040046
254 Ga0265338_10003476
255 Ga0265338_10014324
256 Ga0265338_10099591
257 Ga0265338_10172156
258 Ga0265320_10110310
259 Ga0265325_10203717
260 Ga0265339_10017055
261 Ga0265339_10176866
262 Ga0265331_10059462
263 Ga0265327_10007902
264 Ga0265316_10023607
265 Ga0265313_10012160
266 Ga0265313_10041781
267 Ga0265314_10009890
268 Ga0265314_10030891
269 Ga0395900_0077152
270 Ga0395900_0824574
271 Ga0395900_1823902
272 Ga0395898_0021603
273 Ga0395898_0534193
274 Ga0395905_0055938
275 Ga0395901_0022712
276 Ga0395901_0120143
277 Ga0395901_0148917
278 Ga0395901_0376633
279 Ga0395901_0495364
280 Ga0395901_0644132
281 Ga0395901_1177207
282 Ga0466966_0056580
283 Ga0466961_0010486
284 Ga0466961_0030487
285 Ga0466963_0000178
286 Ga0466963_0003317
287 Ga0466963_0004200
288 Ga0466963_0011200
289 Ga0466963_0270483
290 Ga0466964_0003319
291 Ga0466964_0003804
292 Ga0466964_0068100
293 Ga0466971_0003536
294 Ga0466968_0202709
295 Ga0466957_0007912
296 Ga0466957_0011172
297 Ga0466957_0372561
298 Ga0466960_0184323
299 Ga0466959_0015303
300 Ga0466958_0008809
301 Ga0466958_0018380
302 Ga0466967_0011098
303 Ga0466967_0036063
304 Ga0466967_0048852
305 Ga0466967_0152145
306 Ga0466967_0306444
307 Ga0466967_0363686
308 Ga0466967_0391128
309 Ga0466967_1151667
310 Ga0495592_0904281
311 Ga0495651_0009428
312 Ga0495584_0300231
313 Ga0495584_0312687
314 Ga0495608_0711774
315 Ga0495618_0363861
316 Ga0495628_0238238
317 Ga0495652_0007982
318 Ga0495645_0014453
319 Ga0495645_0145471
320 Ga0495635_0788521
321 Ga0495599_0027697
322 Ga0495623_0207786
323 Ga0495680_0384299
324 Ga0495684_0304891
325 Ga0495602_0011277
326 Ga0496100_0298217
327 Ga0496101_0216864
328 Ga0496102_0228631
329 Ga0496109_0178015
330 Ga0496111_0685464
331 Ga0496114_0166837
332 Ga0496115_0034040
333 Ga0501046_0527675
334 Ga0501047_0018410
335 Ga0501067_0011957
336 Ga0501067_0078122
337 Ga0501069_0005640
338 Ga0501069_0076362
339 Ga0501069_0154749
340 Ga0501069_0522611
341 Ga0501070_0063441
342 Ga0501073_0689180
343 Ga0501074_0016823
344 Ga0501079_0079834
345 Ga0495601_0591033
346 Ga0495601_0745793
347 Ga0495601_0815434
348 Ga0495595_0370299
349 Ga0466962_0001973
350 Ga0466962_0011918
351 Ga0466962_0020801
352 Ga0530510_0376514

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04545

Sigma70_r4

Sigma-70, region 4

124

173

0.97

PF08281

Sigma70_r4_2

Sigma-70, region 4

119

171

0.95

PF04542

Sigma70_r2

Sigma-70 region 2

34

101

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
7bhy-assembly1.cif.gz_A dna-binding domain of deor in complex with the dna operator 0.9797 109 147
7bhy-assembly1.cif.gz_B dna-binding domain of deor in complex with the dna operator 0.9692 109 147
2o8x-assembly1.cif.gz_A "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9647 98 150
2o8x-assembly1.cif.gz_B "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9536 98 149
4go1-assembly1.cif.gz_B-2 crystal structure of full length transcription repressor lsrr from e. coli. 0.9456 108 147
ID Description Score Start End Superfamily
3vepE00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9757 101 154 1.10.10.10
3vepH00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9746 101 156 1.10.10.10
2o8xA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9647 98 150 1.10.10.10
4l5jA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9595 109 147 1.10.10.10
4go1A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9594 109 147 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A6G1SZQ7-F1-model_v4 Sigma-70 family RNA polymerase sigma factor 0.8326 8 156 GO:0003677
GO:0006352
GO:0016987
AF-A0A0G1HIB0-F1-model_v4 RNA polymerase, sigma-24 subunit, ECF subfamily 0.8203 3 155 GO:0003677
GO:0006352
GO:0016987
AF-A0A3M1LTZ7-F1-model_v4 Sigma-70 family RNA polymerase sigma factor 0.8168 6 155 GO:0003677
GO:0006352
GO:0016987
AF-A0A538DLH6-F1-model_v4 Sigma-70 family RNA polymerase sigma factor 0.816 2 155 GO:0003677
GO:0006352
GO:0016987
AF-A0A140DUH7-F1-model_v4 RNA polymerase subunit sigma 0.809 8 155 GO:0003677
GO:0006352
GO:0016987

Map