F265681

General Info

Members Datasets Scaffolds Average Seq Length
175 138 350 194

Family's Representative Sequence

Representative Sequence 3300005295|Ga0065707_10249725|Ga0065707_102497252
Length 227
Sequence VAITEGWAPQGRGALTASPTIETEGMVHKAMSANTKTVFTTGEAAKICKVSQQTIIRCFDNGSLKGFRVPGSRFRRIPRNELYTFMRDNQIPTDALESGKRKVLIVDDDQELVELMSDVFARDGRFEIKTANNGFDAGMLVKEFRPDLVVLDIMLPDINGKEVCQRVRADSTLEAVKVICISGMVEADKVADLRAAGADDFLQKPFTVDKLLDRSCDLLELEKPVLA

Samples

Sample ID Description Type Environment
1 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
2 3300004799 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
3 3300004800 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
4 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
5 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
13 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
14 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
15 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
16 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
19 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
22 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
23 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
26 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
27 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
28 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
33 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
34 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
36 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
37 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
38 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
39 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
40 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
43 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
44 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
45 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
46 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
47 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
48 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
49 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
50 3300019190 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZE3 metaT (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
51 3300019192 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA3 metaT (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
52 3300020610 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
53 3300023672 Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZE5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
54 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
75 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
76 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
77 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
78 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
79 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
80 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
81 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
82 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
83 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
84 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
85 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
86 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
87 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
88 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
89 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
90 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
91 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
92 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
93 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
94 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
95 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
96 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
97 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
98 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
99 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
100 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
101 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
102 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
103 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
104 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
105 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
106 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
107 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
108 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
111 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
115 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
116 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
117 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
118 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
119 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
120 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
121 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
122 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
123 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
124 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
125 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
126 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
127 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
128 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
129 3300059493 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 19R_SW_T1_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
130 3300059506 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 52R_CW_T2_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
131 3300059508 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 53R_CD_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
132 3300059607 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 163R_SW_T3_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
133 3300059623 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 66R_SW_T2_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
134 3300059639 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 3R_CW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
135 3300059643 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 13R_AD_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
136 3300059655 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 152R_CD_T3_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
137 2687453341 Pirellula sp. SH-Sr6A Isolate Unclassified
138 2836160341 Unclassified Planctomycetes Bin 134 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 88.57
Metatranscriptomes 10.29
Isolates 1.14

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4
Nodule 0
Rhizoplane 0
Rhizosphere 93.14
Stem 0
Stem Tuber 0
Unclassified 2.86

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065707_10249725 3300005295 Bacteria 1129
2 Ga0058863_11892360 3300004799 Bacteria 918
3 Ga0058863_11902673 3300004799 Bacteria 1027
4 Ga0058861_12023550 3300004800 Bacteria 762
5 Ga0065704_10176848 3300005289 Bacteria 1259
6 Ga0065712_10070726 3300005290 Bacteria 5761
7 Ga0065707_10001210 3300005295 Bacteria 9792
8 Ga0065707_10495965 3300005295 Bacteria 761
9 Ga0070683_100036395 3300005329 Bacteria 4504
10 Ga0070670_100458193 3300005331 Bacteria 1131
11 Ga0070680_100581708 3300005336 Bacteria 961
12 Ga0070671_100840179 3300005355 Bacteria 801
13 Ga0070667_100005912 3300005367 Bacteria 10188
14 Ga0070714_100356403 3300005435 Bacteria 1375
15 Ga0070713_100652524 3300005436 Bacteria 1002
16 Ga0070701_10267802 3300005438 Bacteria 1038
17 Ga0070711_100865021 3300005439 Bacteria 770
18 Ga0070705_100599221 3300005440 Bacteria 852
19 Ga0070678_100777783 3300005456 Bacteria 868
20 Ga0070698_100107658 3300005471 Bacteria 2755
21 Ga0068853_100073612 3300005539 Bacteria 2979
22 Ga0070665_100000029 3300005548 Bacteria 342699
23 Ga0070665_100081888 3300005548 Bacteria 3233
24 Ga0070665_100728049 3300005548 Bacteria 1005
25 Ga0068855_100214643 3300005563 Bacteria 2160
26 Ga0068857_100033983 3300005577 Bacteria 4511
27 Ga0068852_100466301 3300005616 Bacteria 1253
28 Ga0068858_100182416 3300005842 Bacteria 1982
29 Ga0068860_100161107 3300005843 Unclassified 2163
30 Ga0068860_100504740 3300005843 Bacteria 1208
31 Ga0081455_10262337 3300005937 Bacteria 1258
32 Ga0075365_10257766 3300006038 Bacteria 1226
33 Ga0075370_10067127 3300006353 Bacteria 2047
34 Ga0068871_100802441 3300006358 Bacteria 868
35 Ga0075428_100076578 3300006844 Bacteria 3652
36 Ga0075428_100776324 3300006844 Bacteria 1019
37 Ga0105240_10172786 3300009093 Bacteria 2557
38 Ga0105240_11303929 3300009093 Bacteria 766
39 Ga0111539_10947060 3300009094 Bacteria 1001
40 Ga0111539_11270898 3300009094 Bacteria 854
41 Ga0105245_10151103 3300009098 Bacteria 2196
42 Ga0105247_10137660 3300009101 Bacteria 1597
43 Ga0114129_11135410 3300009147 Bacteria 977
44 Ga0105241_10057702 3300009174 Unclassified 2979
45 Ga0105241_10229090 3300009174 Bacteria 1566
46 Ga0105242_10615378 3300009176 Bacteria 1051
47 Ga0105248_11163959 3300009177 Bacteria 872
48 Ga0105237_10346277 3300009545 Bacteria 1490
49 Ga0105238_10000371 3300009551 Bacteria 48236
50 Ga0105238_10080457 3300009551 Bacteria 3247
51 Ga0105238_11401213 3300009551 Bacteria 726
52 Ga0105249_10563583 3300009553 Bacteria 1191
53 Ga0105239_10055159 3300010375 Bacteria 4359
54 Ga0105239_10486930 3300010375 Bacteria 1402
55 Ga0105246_10754748 3300011119 Bacteria 858
56 Ga0157373_10963064 3300013100 Bacteria 635
57 Ga0157369_10196656 3300013105 Bacteria 2117
58 Ga0157374_10274677 3300013296 Bacteria 1662
59 Ga0157374_10412057 3300013296 Bacteria 1349
60 Ga0157374_10520311 3300013296 Bacteria 1195
61 Ga0157378_11121417 3300013297 Bacteria 824
62 Ga0163162_10196689 3300013306 Bacteria 2145
63 Ga0157372_10112817 3300013307 Bacteria 3115
64 Ga0163163_10476999 3300014325 Bacteria 1308
65 Ga0184600_113628 3300019190 Bacteria 879
66 Ga0184603_107772 3300019192 Bacteria 742
67 Ga0154015_1468376 3300020610 Bacteria 1052
68 Ga0247553_103880 3300023672 Bacteria 743
69 Ga0207656_10185416 3300025321 Bacteria 1000
70 Ga0207710_10069308 3300025900 Bacteria 1614
71 Ga0207710_10321378 3300025900 Bacteria 785
72 Ga0207699_10376793 3300025906 Bacteria 1006
73 Ga0207695_10252182 3300025913 Bacteria 1664
74 Ga0207660_10807443 3300025917 Bacteria 766
75 Ga0207681_10375386 3300025923 Bacteria 1144
76 Ga0207694_10163302 3300025924 Bacteria 1800
77 Ga0207694_10423738 3300025924 Bacteria 1109
78 Ga0207694_10773486 3300025924 Bacteria 811
79 Ga0207687_10206337 3300025927 Bacteria 1539
80 Ga0207664_10425182 3300025929 Bacteria 1184
81 Ga0207711_10454389 3300025941 Bacteria 1192
82 Ga0207661_10075998 3300025944 Bacteria 2758
83 Ga0207661_10336910 3300025944 Bacteria 1359
84 Ga0207667_10108927 3300025949 Bacteria 2857
85 Ga0207667_10224574 3300025949 Bacteria 1924
86 Ga0207639_10057644 3300026041 Bacteria 2983
87 Ga0207678_10854786 3300026067 Bacteria 804
88 Ga0207641_10080766 3300026088 Bacteria 2822
89 Ga0207676_10633937 3300026095 Bacteria 1030
90 Ga0207674_10001531 3300026116 Bacteria 29781
91 Ga0207683_10892172 3300026121 Bacteria 826
92 Ga0268266_10000109 3300028379 Bacteria 171899
93 Ga0268266_10000421 3300028379 Bacteria 64388
94 Ga0268266_10172422 3300028379 Bacteria 1964
95 Ga0268266_10445889 3300028379 Bacteria 1230
96 Ga0268264_10135061 3300028381 Unclassified 2192
97 Ga0268264_10309333 3300028381 Bacteria 1490
98 Ga0265338_10148964 3300028800 Bacteria 1821
99 Ga0265760_10038075 3300031090 Bacteria 1429
100 Ga0265339_10001843 3300031249 Bacteria 15578
101 Ga0265327_10019512 3300031251 Bacteria 4164
102 Ga0265327_10183683 3300031251 Bacteria 955
103 Ga0265316_10300564 3300031344 Bacteria 1169
104 Ga0316575_10025991 3300031665 Bacteria 2273
105 Ga0265314_10158520 3300031711 Bacteria 1380
106 Ga0316593_10129596 3300032168 Unclassified 909
107 Ga0373943_0086431 3300035170 Bacteria 1617
108 Ga0395901_0055122 3300038443 Bacteria 4133
109 Ga0400489_37552 3300039093 Unclassified 1005
110 Ga0436365_1874895 3300039437 Bacteria 668
111 Ga0436360_0658099 3300039438 Bacteria 1211
112 Ga0436363_1397964 3300039450 Bacteria 653
113 Ga0436362_0919133 3300039453 Bacteria 1308
114 Ga0439434_0064995 3300042435 Bacteria 1144
115 Ga0451576_0000117 3300045051 Bacteria 206301
116 Ga0495592_0250076 3300046454 Bacteria 1172
117 Ga0495653_0480105 3300046463 Bacteria 778
118 Ga0495582_0434810 3300046473 Bacteria 757
119 Ga0495639_0044519 3300046475 Bacteria 2006
120 Ga0495608_0184897 3300046511 Bacteria 1317
121 Ga0495630_0002084 3300046517 Bacteria 13912
122 Ga0495666_0154588 3300046526 Bacteria 1065
123 Ga0495665_0002637 3300046531 Bacteria 9672
124 Ga0495587_0045713 3300046536 Bacteria 2601
125 Ga0495634_0237263 3300046642 Bacteria 1120
126 Ga0495599_0074864 3300046678 Bacteria 2114
127 Ga0495613_0095615 3300046689 Bacteria 2149
128 Ga0495613_0175200 3300046689 Bacteria 1521
129 Ga0495624_0002841 3300046690 Bacteria 12958
130 Ga0495581_0076731 3300047315 Bacteria 1933
131 Ga0495674_0013852 3300047319 Bacteria 7568
132 Ga0495676_0101443 3300047321 Bacteria 2129
133 Ga0495684_0001028 3300047471 Bacteria 22665
134 Ga0501033_0037557 3300049570 Bacteria 3625
135 Ga0501034_0003290 3300049571 Bacteria 18459
136 Ga0501034_0006574 3300049571 Bacteria 12476
137 Ga0501034_0012580 3300049571 Bacteria 8735
138 Ga0501034_0028413 3300049571 Bacteria 5691
139 Ga0501034_0061005 3300049571 Bacteria 3788
140 Ga0501034_0158421 3300049571 Bacteria 2237
141 Ga0501034_0188912 3300049571 Bacteria 2023
142 Ga0501034_0351899 3300049571 Bacteria 1401
143 Ga0501036_0061458 3300049572 Bacteria 3182
144 Ga0501041_0440686 3300049577 Bacteria 827
145 Ga0501046_0106785 3300049580 Bacteria 2142
146 Ga0501047_0078834 3300049581 Bacteria 3167
147 Ga0501047_0110543 3300049581 Bacteria 2631
148 Ga0501073_0132487 3300049589 Bacteria 1728
149 Ga0501073_0298419 3300049589 Bacteria 1112
150 Ga0501075_0599468 3300049591 Bacteria 840
151 Ga0501076_0546557 3300049592 Bacteria 955
152 Ga0501044_0241899 3300049823 Bacteria 1748
153 nmdc:mga00v17_54358_c1 3300050491 Bacteria 2442
154 nmdc:mga0yw44_303847_c1 3300050492 Bacteria 1069
155 nmdc:mga06z11_129215_c1 3300050494 Bacteria 1417
156 nmdc:mga07m45_76184_c1 3300050496 Bacteria 1912
157 nmdc:mga0n895_515703_c1 3300050512 Bacteria 1203
158 nmdc:mga0a205_472350_c1 3300050515 Bacteria 1113
159 Ga0495601_0000268 3300053077 Bacteria 28194
160 Ga0495601_0650007 3300053077 Bacteria 675
161 Ga0495595_0073718 3300053084 Bacteria 1617
162 Ga0495619_0507606 3300053085 Bacteria 829
163 Ga0500658_0115866 3300053134 Bacteria 1184
164 Ga0501084_0205613 3300054114 Bacteria 1661
165 Ga0587077_012682 3300059493 Bacteria 1352
166 Ga0587085_039513 3300059506 Bacteria 815
167 Ga0587088_084067 3300059508 Bacteria 686
168 Ga0587125_004523 3300059607 Bacteria 1240
169 Ga0587101_009095 3300059623 Bacteria 1219
170 Ga0587101_018624 3300059623 Bacteria 975
171 Ga0587062_060722 3300059639 Bacteria 662
172 Ga0587072_046755 3300059643 Bacteria 856
173 Ga0587114_012648 3300059655 Bacteria 1073
174 2688392274 2687453341 Bacteria 6534136
175 2836162493 2836160341 Unclassified 5867367
176 Ga0065707_10249725
177 Ga0058863_11892360
178 Ga0058863_11902673
179 Ga0058861_12023550
180 Ga0065704_10176848
181 Ga0065712_10070726
182 Ga0065707_10001210
183 Ga0065707_10495965
184 Ga0070683_100036395
185 Ga0070670_100458193
186 Ga0070680_100581708
187 Ga0070671_100840179
188 Ga0070667_100005912
189 Ga0070714_100356403
190 Ga0070713_100652524
191 Ga0070701_10267802
192 Ga0070711_100865021
193 Ga0070705_100599221
194 Ga0070678_100777783
195 Ga0070698_100107658
196 Ga0068853_100073612
197 Ga0070665_100000029
198 Ga0070665_100081888
199 Ga0070665_100728049
200 Ga0068855_100214643
201 Ga0068857_100033983
202 Ga0068852_100466301
203 Ga0068858_100182416
204 Ga0068860_100161107
205 Ga0068860_100504740
206 Ga0081455_10262337
207 Ga0075365_10257766
208 Ga0075370_10067127
209 Ga0068871_100802441
210 Ga0075428_100076578
211 Ga0075428_100776324
212 Ga0105240_10172786
213 Ga0105240_11303929
214 Ga0111539_10947060
215 Ga0111539_11270898
216 Ga0105245_10151103
217 Ga0105247_10137660
218 Ga0114129_11135410
219 Ga0105241_10057702
220 Ga0105241_10229090
221 Ga0105242_10615378
222 Ga0105248_11163959
223 Ga0105237_10346277
224 Ga0105238_10000371
225 Ga0105238_10080457
226 Ga0105238_11401213
227 Ga0105249_10563583
228 Ga0105239_10055159
229 Ga0105239_10486930
230 Ga0105246_10754748
231 Ga0157373_10963064
232 Ga0157369_10196656
233 Ga0157374_10274677
234 Ga0157374_10412057
235 Ga0157374_10520311
236 Ga0157378_11121417
237 Ga0163162_10196689
238 Ga0157372_10112817
239 Ga0163163_10476999
240 Ga0184600_113628
241 Ga0184603_107772
242 Ga0154015_1468376
243 Ga0247553_103880
244 Ga0207656_10185416
245 Ga0207710_10069308
246 Ga0207710_10321378
247 Ga0207699_10376793
248 Ga0207695_10252182
249 Ga0207660_10807443
250 Ga0207681_10375386
251 Ga0207694_10163302
252 Ga0207694_10423738
253 Ga0207694_10773486
254 Ga0207687_10206337
255 Ga0207664_10425182
256 Ga0207711_10454389
257 Ga0207661_10075998
258 Ga0207661_10336910
259 Ga0207667_10108927
260 Ga0207667_10224574
261 Ga0207639_10057644
262 Ga0207678_10854786
263 Ga0207641_10080766
264 Ga0207676_10633937
265 Ga0207674_10001531
266 Ga0207683_10892172
267 Ga0268266_10000109
268 Ga0268266_10000421
269 Ga0268266_10172422
270 Ga0268266_10445889
271 Ga0268264_10135061
272 Ga0268264_10309333
273 Ga0265338_10148964
274 Ga0265760_10038075
275 Ga0265339_10001843
276 Ga0265327_10019512
277 Ga0265327_10183683
278 Ga0265316_10300564
279 Ga0316575_10025991
280 Ga0265314_10158520
281 Ga0316593_10129596
282 Ga0373943_0086431
283 Ga0395901_0055122
284 Ga0400489_37552
285 Ga0436365_1874895
286 Ga0436360_0658099
287 Ga0436363_1397964
288 Ga0436362_0919133
289 Ga0439434_0064995
290 Ga0451576_0000117
291 Ga0495592_0250076
292 Ga0495653_0480105
293 Ga0495582_0434810
294 Ga0495639_0044519
295 Ga0495608_0184897
296 Ga0495630_0002084
297 Ga0495666_0154588
298 Ga0495665_0002637
299 Ga0495587_0045713
300 Ga0495634_0237263
301 Ga0495599_0074864
302 Ga0495613_0095615
303 Ga0495613_0175200
304 Ga0495624_0002841
305 Ga0495581_0076731
306 Ga0495674_0013852
307 Ga0495676_0101443
308 Ga0495684_0001028
309 Ga0501033_0037557
310 Ga0501034_0003290
311 Ga0501034_0006574
312 Ga0501034_0012580
313 Ga0501034_0028413
314 Ga0501034_0061005
315 Ga0501034_0158421
316 Ga0501034_0188912
317 Ga0501034_0351899
318 Ga0501036_0061458
319 Ga0501041_0440686
320 Ga0501046_0106785
321 Ga0501047_0078834
322 Ga0501047_0110543
323 Ga0501073_0132487
324 Ga0501073_0298419
325 Ga0501075_0599468
326 Ga0501076_0546557
327 Ga0501044_0241899
328 nmdc:mga00v17_54358_c1
329 nmdc:mga0yw44_303847_c1
330 nmdc:mga06z11_129215_c1
331 nmdc:mga07m45_76184_c1
332 nmdc:mga0n895_515703_c1
333 nmdc:mga0a205_472350_c1
334 Ga0495601_0000268
335 Ga0495601_0650007
336 Ga0495595_0073718
337 Ga0495619_0507606
338 Ga0500658_0115866
339 Ga0501084_0205613
340 Ga0587077_012682
341 Ga0587085_039513
342 Ga0587088_084067
343 Ga0587125_004523
344 Ga0587101_009095
345 Ga0587101_018624
346 Ga0587062_060722
347 Ga0587072_046755
348 Ga0587114_012648
349 2688392274
350 2836162493

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

103

215

0.97

PF12728

HTH_17

Helix-turn-helix domain

38

90

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
1zy2-assembly1.cif.gz_A crystal structure of the phosphorylated receiver domain of the transcription regulator ntrc1 from aquifex aeolicus 0.9561 68 186
4kfc-assembly1.cif.gz_A crystal structure of a hyperactive mutant of response regulator kdpe complexed to its promoter dna 0.9529 66 186
8fk2-assembly1.cif.gz_B the n-terminal vicr from streptococcus mutans 0.9462 67 186
2qzj-assembly5.cif.gz_E crystal structure of a two-component response regulator from clostridium difficile 0.9449 66 186
1zh4-assembly1.cif.gz_A crystal structure of the mg+2/bef3-bound receiver domain of kdp potassium transport system response regulator kdpe 0.9438 67 186
ID Description Score Start End Superfamily
1zy2A00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9561 68 186 3.40.50.2300
af_Q2FWH6_1_124_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9524 66 184 3.40.50.2300
af_P9WLC3_19_69_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9523 5 55 1.10.10.10
af_Q06065_2_134_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.943 66 186 3.40.50.2300
1zy2B00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9427 68 186 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A7V1BUY7-F1-model_v4 Response regulator transcription factor 0.9539 66 186 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993
AF-A0A7C1ETQ0-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.9519 66 186 GO:0000155
AF-A0A3C1LW34-F1-model_v4 Stage 0 sporulation protein A homolog 0.9517 66 186 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993
AF-A0A661VNF4-F1-model_v4 Response regulatory domain-containing protein 0.9507 67 186 GO:0000155
GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993
AF-A0A1Z4LL58-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.9505 66 186 GO:0000155

Map