F265276

General Info

Members Datasets Scaffolds Average Seq Length
174 142 348 278

Family's Representative Sequence

Representative Sequence 3300048929|Ga0496126_0061960|Ga0496126_0061960_2255_3253
Length 332
Sequence MSAAPLRTSAATDDGARTPDAPLPRRDVGDAPARPLPAPSATDRVRAGWARWTRGASPVLGPLGTTLKYASLVAACLVAVVPLVTVFMASFKTQAEFRETGPLDPPSSWTNLDNFVTAFTRGGMLQGFVNTTIILVVALTGTILIGTMAAYAIDRFTFRGQRLVVGAFLLATLVPGVTTQVATFQIVSGLGLFNTRWAAIVLFMGTDIISIYIFLQFMKSIPRSLDEAAMLDGANRLTIYARIVFPLLKPAIATVIIIKGIAIYNEFYLPWLYMPKRDLGVISTSLFRFKGPFGAQWEVISAGTVLVIVPTLVAFLLLQRYIYNGLTSGATK

Samples

Sample ID Description Type Environment
1 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300003285 Grassland soil microbial communities from Hopland, California, USA - Sample H3_Rhizo_39 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
8 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
9 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
10 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
11 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
12 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
13 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
14 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
15 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
16 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
17 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
18 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
19 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
20 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
21 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
22 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
23 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
24 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
25 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
26 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
27 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
34 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
35 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
36 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
37 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
38 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
39 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
40 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
41 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
42 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
43 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
44 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
45 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
46 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
47 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
48 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
49 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
50 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
51 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
52 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
53 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
54 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
55 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
56 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
57 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
58 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
59 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
60 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
61 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
62 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
63 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
64 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
65 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
66 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
67 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
68 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
71 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
72 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
73 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
74 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
75 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
76 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
77 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
78 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
79 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
80 2571042143 Paenibacillus graminis RSA19 Isolate Unclassified
81 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
82 2643221543 Paenibacillus sp. Root52 Isolate Unclassified
83 2643221549 Agromyces sp. Root1464 Isolate Unclassified
84 2643221613 Oerskovia sp. Root22 Isolate Unclassified
85 2643221647 Streptomyces sp. Root369 Isolate Unclassified
86 2643221649 Leifsonia sp. Root4 Isolate Unclassified
87 2643221690 Cellulomonas sp. Root485 Isolate Unclassified
88 2643221694 Cellulomonas sp. Root137 Isolate Unclassified
89 2643221721 Oerskovia sp. Root918 Isolate Unclassified
90 2643221722 Cellulomonas sp. Root930 Isolate Unclassified
91 2728368933 Paenibacillus jilunlii DSM 23019 Isolate Rhizosphere
92 2738541272 Promicromonospora sp. AC04 Isolate Unclassified
93 2773857759 Microbacterium sp. 1294 Isolate Unclassified
94 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
95 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
96 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
97 2799112218 Motilibacter rhizosphaerae DSM 45622 Isolate Rhizosphere
98 2802428803 Paenibacillus peoriae NMA1017 Isolate Rhizosphere
99 2821111986 Paenibacillus illinoisensis 582 Isolate Unclassified
100 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
101 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
102 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
103 2864733723 Paenibacillus sp. JGP012 Isolate Rhizosphere
104 2867428634 Streptomyces sp. RP5T Isolate Unclassified
105 2868088558 Phytoactinopolyspora endophytica EGI 60009 Isolate Unclassified
106 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
107 2884994152 Cellulomonas sp. H30R-01 Isolate Rhizosphere
108 2885526491 Paenibacillus sp. LK1 Isolate Rhizosphere
109 2889042446 Paenibacillus sp. 37 Isolate Rhizosphere
110 2904162308 Paenibacillus sp. AD87 Isolate Unclassified
111 2904490793 Paenibacillus sp. 1295 Isolate Rhizosphere
112 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
113 2919160200 Paenibacillus sp. 2003 Isolate Unclassified
114 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
115 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
116 2931384279 Paenibacillus sp. DR312 Isolate Rhizosphere
117 2939679117 Paenibacillus sp. 4624 Isolate Rhizosphere
118 2945991243 Paenibacillus sp. B21a W2I17 Isolate Rhizosphere
119 2946053406 Paenibacillus sp. W4I10 Isolate Rhizosphere
120 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
121 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
122 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
123 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
124 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
125 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
126 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
127 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
128 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
129 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
130 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
131 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
132 2971403814 Paenibacillus tritici LMG 29502 Isolate Unclassified
133 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
134 2988225383 Paenibacillus sp. P46E Isolate Rhizosphere
135 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
136 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
137 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
138 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
139 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
140 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere
141 8056579771 Promicromonospora iranensis UTMC 00792 Isolate Rhizosphere
142 8057977335 Paenibacillus oenotherae DT7-4 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 63.22
Metatranscriptomes 0.57
Isolates 36.21

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.6
Nodule 1.72
Rhizoplane 1.15
Rhizosphere 63.79
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0496126_0061960 3300048929 Bacteria 3358
2 JGI24737J22298_10022486 3300001990 Bacteria 2004
3 Ga0007423J48922_100227 3300003285 Bacteria 3947
4 rootH2_10047052 3300003320 Bacteria 6878
5 rootL2_10003645 3300003322 Bacteria 12504
6 rootL2_10016568 3300003322 Bacteria 3058
7 rootH1_10003633 3300003323 Bacteria 3731
8 rootH1_10011215 3300003323 Bacteria 2624
9 JGI25405J52794_10033790 3300003911 Bacteria 1068
10 Ga0065714_10070592 3300005288 Bacteria 3818
11 Ga0068855_100324508 3300005563 Bacteria 1701
12 Ga0070664_100191200 3300005564 Bacteria 1824
13 Ga0068856_100065523 3300005614 Bacteria 3591
14 Ga0081455_10017128 3300005937 Bacteria 6962
15 Ga0075363_100055647 3300006048 Bacteria 2120
16 Ga0075363_100073922 3300006048 Bacteria 1855
17 Ga0105244_10091396 3300009036 Bacteria 1496
18 Ga0105245_10002486 3300009098 Bacteria 16658
19 Ga0114129_10003428 3300009147 Bacteria 22293
20 Ga0105241_10250765 3300009174 Bacteria 1501
21 Ga0105248_10002635 3300009177 Bacteria 19942
22 Ga0105246_10008606 3300011119 Bacteria 6276
23 Ga0105246_10357620 3300011119 Bacteria 1199
24 Ga0157371_10034683 3300013102 Bacteria 3618
25 Ga0157369_10066516 3300013105 Bacteria 3877
26 Ga0157369_10438573 3300013105 Bacteria 1353
27 Ga0171462_1001 3300013250 Bacteria 1135406
28 Ga0157372_10121057 3300013307 Bacteria 3006
29 Ga0157375_10313505 3300013308 Bacteria 1733
30 Ga0209437_100570 3300025233 Bacteria 24007
31 Ga0209455_1001173 3300025272 Bacteria 12604
32 Ga0207655_1003619 3300025728 Bacteria 11420
33 Ga0207655_1053953 3300025728 Bacteria 1602
34 Ga0207654_10165779 3300025911 Bacteria 1430
35 Ga0207687_10002252 3300025927 Bacteria 13147
36 Ga0207711_10026710 3300025941 Bacteria 4847
37 Ga0207667_10365712 3300025949 Bacteria 1471
38 Ga0207674_10145456 3300026116 Bacteria 2329
39 Ga0209281_1001052 3300027111 Bacteria 20798
40 Ga0307513_10000383 3300031456 Bacteria 64328
41 Ga0307513_10383065 3300031456 Bacteria 1145
42 Ga0307508_10011880 3300031616 Bacteria 7963
43 Ga0307514_10001356 3300031649 Bacteria 30991
44 Ga0307514_10077050 3300031649 Bacteria 2481
45 Ga0307516_10006318 3300031730 Bacteria 13917
46 Ga0307518_10120493 3300031838 Bacteria 1857
47 Ga0307406_10000641 3300031901 Bacteria 19909
48 Ga0307406_10058423 3300031901 Bacteria 2479
49 Ga0307406_10318161 3300031901 Bacteria 1202
50 Ga0307412_10225714 3300031911 Bacteria 1439
51 Ga0307416_100852245 3300032002 Bacteria 1009
52 Ga0307415_100121740 3300032126 Bacteria 1958
53 Ga0307415_100179727 3300032126 Bacteria 1659
54 Ga0307415_100219226 3300032126 Bacteria 1524
55 Ga0307415_100229052 3300032126 Bacteria 1495
56 Ga0307415_100292030 3300032126 Bacteria 1346
57 Ga0307510_10077668 3300033180 Bacteria 3254
58 Ga0373935_0020728 3300035692 Bacteria 4019
59 Ga0439436_0006097 3300041404 Bacteria 3699
60 Ga0451791_0647373 3300041451 Bacteria 1105
61 Ga0450894_000646 3300042131 Bacteria 5835
62 Ga0450899_000861 3300042135 Bacteria 3465
63 Ga0451577_0031248 3300042876 Bacteria 4806
64 Ga0466972_0000597 3300044658 Bacteria 17583
65 Ga0466965_0002557 3300044683 Bacteria 7773
66 Ga0466965_0038745 3300044683 Bacteria 2342
67 Ga0453684_0000003 3300044712 Bacteria 1481694
68 Ga0453684_0001951 3300044712 Bacteria 53210
69 Ga0453684_0009038 3300044712 Bacteria 17588
70 Ga0466968_0002323 3300044735 Bacteria 6946
71 Ga0466968_0004404 3300044735 Bacteria 5260
72 Ga0466960_0044356 3300044901 Bacteria 2119
73 Ga0495594_0033297 3300046499 Bacteria 2801
74 Ga0496114_0101902 3300048917 Bacteria 2452
75 Ga0496117_0148553 3300048920 Bacteria 1391
76 Ga0496119_0001331 3300048922 Bacteria 30331
77 Ga0496122_0002672 3300048925 Bacteria 24844
78 Ga0496124_0032114 3300048927 Bacteria 4642
79 Ga0496124_0525197 3300048927 Bacteria 787
80 Ga0496125_0000075 3300048928 Bacteria 234414
81 Ga0496125_0010176 3300048928 Bacteria 9533
82 Ga0496126_0016940 3300048929 Bacteria 7272
83 Ga0501032_0005356 3300049569 Bacteria 9546
84 Ga0501032_0090178 3300049569 Bacteria 2034
85 Ga0501033_0009736 3300049570 Bacteria 7385
86 Ga0501033_0011404 3300049570 Bacteria 6802
87 Ga0501034_0008638 3300049571 Bacteria 10743
88 Ga0501034_0046398 3300049571 Bacteria 4390
89 Ga0501034_0144235 3300049571 Bacteria 2359
90 Ga0501036_0027450 3300049572 Bacteria 4810
91 Ga0501037_0111038 3300049573 Bacteria 1975
92 Ga0501038_0000122 3300049574 Bacteria 65832
93 Ga0501038_0039164 3300049574 Bacteria 4147
94 Ga0501038_0049480 3300049574 Bacteria 3634
95 Ga0501043_0082552 3300049579 Bacteria 2526
96 Ga0501043_0168032 3300049579 Bacteria 1712
97 Ga0501046_0008534 3300049580 Bacteria 8922
98 Ga0501047_0014708 3300049581 Bacteria 7446
99 Ga0501047_0022464 3300049581 Bacteria 6058
100 Ga0501067_0090346 3300049583 Bacteria 1700
101 Ga0501067_0181878 3300049583 Bacteria 1171
102 Ga0501070_0000305 3300049586 Bacteria 45485
103 Ga0501070_0154265 3300049586 Bacteria 1894
104 Ga0501035_0244110 3300049822 Bacteria 1527
105 Ga0501044_0016997 3300049823 Bacteria 7806
106 nmdc:mga03n38_245336_c1 3300050490 Bacteria 944
107 nmdc:mga05p37_12843_c1 3300050507 Bacteria 10016
108 Ga0500568_0000095 3300053139 Bacteria 82601
109 Ga0500616_0005926 3300053153 Bacteria 8165
110 Ga0500616_0091061 3300053153 Bacteria 1510
111 Ga0501084_0287700 3300054114 Bacteria 1388
112 2571532748 2571042143 Bacteria 6986194
113 2585307345 2582581313 Bacteria 10042643
114 2643741310 2643221543 Bacteria 6628015
115 2643767520 2643221549 Bacteria 4042819
116 2644083918 2643221613 Bacteria 4622396
117 2644264883 2643221647 Bacteria 10741251
118 2644279470 2643221649 Bacteria 3867359
119 2644506791 2643221690 Bacteria 4654705
120 2644527770 2643221694 Bacteria 4392972
121 2644666816 2643221721 Bacteria 4486924
122 2644670609 2643221722 Bacteria 4247614
123 2728529377 2728368933 Bacteria 7044283
124 2738697907 2738541272 Bacteria 6848551
125 2774383495 2773857759 Bacteria 2963774
126 2785340546 2784746763 Bacteria 9783172
127 2785372212 2784746768 Bacteria 10036182
128 2786673292 2786546132 Bacteria 10419719
129 2799183517 2799112218 Bacteria 4315149
130 2802437740 2802428803 Bacteria 5806948
131 2821116450 2821111986 Bacteria 6894338
132 2837273643 2837268691 Bacteria 7850704
133 2862391752 2862382967 Bacteria 10317375
134 2863409308 2863404153 Bacteria 9672205
135 2864734511 2864733723 Bacteria 6770668
136 2867438032 2867428634 Bacteria 9590268
137 2868091927 2868088558 Bacteria 7609351
138 2877678429 2877676314 Bacteria 9512378
139 2884994568 2884994152 Bacteria 4492978
140 2885532882 2885526491 Bacteria 7164189
141 2889048458 2889042446 Bacteria 7618936
142 2904167699 2904162308 Bacteria 7086713
143 2904494718 2904490793 Bacteria 7046938
144 2912716930 2912715099 Bacteria 9460473
145 2919164168 2919160200 Bacteria 6929020
146 2919444653 2919443155 Bacteria 4072969
147 2928122132 2928121344 Bacteria 3972376
148 2931385570 2931384279 Bacteria 7299545
149 2939680273 2939679117 Bacteria 6921672
150 2945995808 2945991243 Bacteria 7008369
151 2946058520 2946053406 Bacteria 6978655
152 2954383376 2954380949 Bacteria 10050426
153 2954679595 2954673503 Bacteria 9685905
154 2954684560 2954682443 Bacteria 9862841
155 2954694087 2954691527 Bacteria 10720516
156 2954709194 2954701450 Bacteria 10834262
157 2954713694 2954711539 Bacteria 10867210
158 2954723657 2954721474 Bacteria 10456478
159 2954738175 2954731030 Bacteria 10243860
160 2954742560 2954740390 Bacteria 10229294
161 2954757035 2954749733 Bacteria 10366972
162 2954761524 2954759201 Bacteria 9358192
163 2968562020 2968558590 Bacteria 6956864
164 2971404323 2971403814 Bacteria 7370929
165 2977252003 2977251589 Bacteria 2952848
166 2988225412 2988225383 Bacteria 7221625
167 2990067195 2990059506 Bacteria 9321252
168 2996634926 2996632988 Bacteria 6921523
169 8008563586 8008558824 Bacteria 10610750
170 8045832472 8045830549 Bacteria 4444727
171 8048411186 8048406513 Bacteria 8936924
172 8054467158 8054465665 Bacteria 7323556
173 8056580594 8056579771 Bacteria 5840325
174 8057979251 8057977335 Bacteria 5694872
175 Ga0496126_0061960
176 JGI24737J22298_10022486
177 Ga0007423J48922_100227
178 rootH2_10047052
179 rootL2_10003645
180 rootL2_10016568
181 rootH1_10003633
182 rootH1_10011215
183 JGI25405J52794_10033790
184 Ga0065714_10070592
185 Ga0068855_100324508
186 Ga0070664_100191200
187 Ga0068856_100065523
188 Ga0081455_10017128
189 Ga0075363_100055647
190 Ga0075363_100073922
191 Ga0105244_10091396
192 Ga0105245_10002486
193 Ga0114129_10003428
194 Ga0105241_10250765
195 Ga0105248_10002635
196 Ga0105246_10008606
197 Ga0105246_10357620
198 Ga0157371_10034683
199 Ga0157369_10066516
200 Ga0157369_10438573
201 Ga0171462_1001
202 Ga0157372_10121057
203 Ga0157375_10313505
204 Ga0209437_100570
205 Ga0209455_1001173
206 Ga0207655_1003619
207 Ga0207655_1053953
208 Ga0207654_10165779
209 Ga0207687_10002252
210 Ga0207711_10026710
211 Ga0207667_10365712
212 Ga0207674_10145456
213 Ga0209281_1001052
214 Ga0307513_10000383
215 Ga0307513_10383065
216 Ga0307508_10011880
217 Ga0307514_10001356
218 Ga0307514_10077050
219 Ga0307516_10006318
220 Ga0307518_10120493
221 Ga0307406_10000641
222 Ga0307406_10058423
223 Ga0307406_10318161
224 Ga0307412_10225714
225 Ga0307416_100852245
226 Ga0307415_100121740
227 Ga0307415_100179727
228 Ga0307415_100219226
229 Ga0307415_100229052
230 Ga0307415_100292030
231 Ga0307510_10077668
232 Ga0373935_0020728
233 Ga0439436_0006097
234 Ga0451791_0647373
235 Ga0450894_000646
236 Ga0450899_000861
237 Ga0451577_0031248
238 Ga0466972_0000597
239 Ga0466965_0002557
240 Ga0466965_0038745
241 Ga0453684_0000003
242 Ga0453684_0001951
243 Ga0453684_0009038
244 Ga0466968_0002323
245 Ga0466968_0004404
246 Ga0466960_0044356
247 Ga0495594_0033297
248 Ga0496114_0101902
249 Ga0496117_0148553
250 Ga0496119_0001331
251 Ga0496122_0002672
252 Ga0496124_0032114
253 Ga0496124_0525197
254 Ga0496125_0000075
255 Ga0496125_0010176
256 Ga0496126_0016940
257 Ga0501032_0005356
258 Ga0501032_0090178
259 Ga0501033_0009736
260 Ga0501033_0011404
261 Ga0501034_0008638
262 Ga0501034_0046398
263 Ga0501034_0144235
264 Ga0501036_0027450
265 Ga0501037_0111038
266 Ga0501038_0000122
267 Ga0501038_0039164
268 Ga0501038_0049480
269 Ga0501043_0082552
270 Ga0501043_0168032
271 Ga0501046_0008534
272 Ga0501047_0014708
273 Ga0501047_0022464
274 Ga0501067_0090346
275 Ga0501067_0181878
276 Ga0501070_0000305
277 Ga0501070_0154265
278 Ga0501035_0244110
279 Ga0501044_0016997
280 nmdc:mga03n38_245336_c1
281 nmdc:mga05p37_12843_c1
282 Ga0500568_0000095
283 Ga0500616_0005926
284 Ga0500616_0091061
285 Ga0501084_0287700
286 2571532748
287 2585307345
288 2643741310
289 2643767520
290 2644083918
291 2644264883
292 2644279470
293 2644506791
294 2644527770
295 2644666816
296 2644670609
297 2728529377
298 2738697907
299 2774383495
300 2785340546
301 2785372212
302 2786673292
303 2799183517
304 2802437740
305 2821116450
306 2837273643
307 2862391752
308 2863409308
309 2864734511
310 2867438032
311 2868091927
312 2877678429
313 2884994568
314 2885532882
315 2889048458
316 2904167699
317 2904494718
318 2912716930
319 2919164168
320 2919444653
321 2928122132
322 2931385570
323 2939680273
324 2945995808
325 2946058520
326 2954383376
327 2954679595
328 2954684560
329 2954694087
330 2954709194
331 2954713694
332 2954723657
333 2954738175
334 2954742560
335 2954757035
336 2954761524
337 2968562020
338 2971404323
339 2977252003
340 2988225412
341 2990067195
342 2996634926
343 8008563586
344 8045832472
345 8048411186
346 8054467158
347 8056580594
348 8057979251

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00528

BPD_transp_1

Binding-protein-dependent transport system inner membrane component

116

327

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
4tqu-assembly1.cif.gz_N crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate 0.8628 5 267
4tqu-assembly1.cif.gz_N crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate 0.8225 5 267
4jbw-assembly2.cif.gz_I crystal structure of e. coli maltose transporter malfgk2 in complex with its regulatory protein eiiaglc 0.8146 4 265
7cad-assembly1.cif.gz_B mycobacterium smegmatis sugabc complex 0.776 1 273
4jbw-assembly2.cif.gz_I crystal structure of e. coli maltose transporter malfgk2 in complex with its regulatory protein eiiaglc 0.7747 4 265
ID Description Score Start End Superfamily
af_L7N652_1_266_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9294 6 267 1.10.3720.10
af_O53483_6_271_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9199 3 267 1.10.3720.10
af_L7N652_1_266_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9029 6 267 1.10.3720.10
af_O53483_6_271_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9003 3 267 1.10.3720.10
af_P77716_1_267_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8932 2 263 1.10.3720.10
ID Description Score Start End GO Terms
AF-A0A1N6E814-F1-model_v4 Carbohydrate ABC transporter membrane protein 2, CUT1 family 0.9318 8 270 GO:0005886
GO:0055085
AF-A0A0F9GJK9-F1-model_v4 ABC transmembrane type-1 domain-containing protein 0.9293 6 274 GO:0005886
GO:0055085
AF-A0A845D2B1-F1-model_v4 Carbohydrate ABC transporter permease 0.9259 2 273 GO:0005886
GO:0055085
AF-A0A1I9Z032-F1-model_v4 deleted 0.9246 1 271
AF-A0A6B0YQW1-F1-model_v4 Carbohydrate ABC transporter permease 0.9236 3 273 GO:0005886
GO:0055085

Map