F264814

General Info

Members Datasets Scaffolds Average Seq Length
174 129 334 423

Family's Representative Sequence

Representative Sequence 3300031548|Ga0307408_100092234|Ga0307408_1000922342
Length 496
Sequence VVECAALEMRFTGNRNVGSNPTLSARQSSHLIANHLIRPGIAIFLAHLVFHCIAYVRITARVIWGHYGGINLQDWGHWMLTDLQCKKAKAGEKDYKLADAHGLYLFVTKAGFRSWRWKYRFAGKEKRLVLGSYPEMSLGAAREARGNAARLLKSGVDPSLQARQLAAMRLEEAETTFEAVAREWHGQQVSGWVPRHAADVLKSLEQDVFPKIGALPIKGITSPMVLEVIRAIENRPSIETARRVRQRISAVYAYAIASGLADADPAAPIRAALKPLIKGRQPALATLEEARALLRTVEAAPAHPMTKLASRLLALTALRQGVLRTTMWSELEGLDAEAPVWRIPAARMKLKLDRKIDARFDFLLPLSRQAMDVLAAARAFAPDSRLVFPSQRHAHKPISENAVGYLYNRLVSHGRHVPHGWRSTFSTVMNERAQAQGLAGDRAIIDLMLAHIPDGVEASYNRAAYMPRRRELAQEWADLLLKDMPPAMALLEGPRR

Samples

Sample ID Description Type Environment
1 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
2 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
3 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
4 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
5 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
8 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
9 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
10 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
11 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
12 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
13 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
14 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
15 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
16 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
17 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
18 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
19 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
20 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
21 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
22 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
23 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
24 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
25 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
26 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
30 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
31 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
32 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
33 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
34 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
35 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
36 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
49 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
52 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
53 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
54 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
55 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
56 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
57 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
58 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
59 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
60 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
61 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
62 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
63 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
64 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
65 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
66 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
67 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
68 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
69 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
70 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
71 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
72 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
73 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
74 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
75 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
76 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
77 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
78 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
79 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
80 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
81 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
82 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
83 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
84 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
85 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
86 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
87 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
88 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
89 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
90 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
91 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
92 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
93 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
96 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
97 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
98 3300049707 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_B_2_drought Metagenome Rhizosphere
99 3300049853 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought Metagenome Rhizosphere
100 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
101 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
102 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
103 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
104 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
105 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
106 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
107 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
108 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
109 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
110 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
111 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
112 2510917021 Novosphingobium sp. AP12 Isolate Rhizosphere
113 2599185359 Sphingomonas sp. NFR04 Isolate Rhizoplane
114 2693429783 Mesorhizobium sp. LCM 4577 Isolate Rhizosphere
115 2738541275 Novosphingobium sp. GV027 Isolate Unclassified
116 2738541301 Novosphingobium sp. GV079 Isolate Unclassified
117 2738541304 Novosphingobium sp. GV061 Isolate Unclassified
118 2738543022 Novosphingobium sp. GV055 Isolate Unclassified
119 2738543033 Novosphingobium sp. GV064 Isolate Unclassified
120 2751185897 Sphingomonas panacis DCY99 Isolate Unclassified
121 2848297114 Croceibacterium ferulae EGI 63111 Isolate Unclassified
122 2879163058 Sphingomonas pokkalii L3B27 Isolate Rhizosphere
123 2935608549 Bradyrhizobium sp. RT6a Isolate Nodule
124 2935819856 Bradyrhizobium sp. RT3b Isolate Nodule
125 2990265787 Sphingomonas sp. SORGH_AS802 Isolate Aerial Root
126 2993693658 Sphingomonas sp. SORGH_AS438 Isolate Aerial Root
127 8016511872 Bradyrhizobium sp. S3.14.4 Isolate Nodule
128 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified
129 8056681323 Bradyrhizobium cenepequi CNPSo 4026 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 89.66
Metatranscriptomes 0
Isolates 10.34

Biome Distribution

Category Percentage (%)
Aerial Root 1.15
Bulb 0
Endosphere 21.26
Nodule 2.3
Rhizoplane 1.72
Rhizosphere 55.75
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307408_100092234 3300031548 Bacteria 2289
2 JGI24741J21665_1003000 3300001915 Bacteria 4193
3 JGI24740J21852_10009920 3300001979 Bacteria 3696
4 JGI24739J22299_10000335 3300001989 Bacteria 15994
5 JGI24735J21928_10014544 3300002067 Bacteria 2464
6 Ga0070660_100003364 3300005339 Bacteria 11000
7 Ga0070661_100001506 3300005344 Bacteria 16200
8 Ga0070669_100002365 3300005353 Bacteria 13634
9 Ga0070667_100029587 3300005367 Bacteria 4566
10 Ga0068853_100001955 3300005539 Bacteria 15185
11 Ga0068853_100106187 3300005539 Bacteria 2488
12 Ga0070665_100000316 3300005548 Bacteria 75107
13 Ga0070664_100088332 3300005564 Bacteria 2680
14 Ga0068856_100003457 3300005614 Bacteria 15970
15 Ga0068856_100006853 3300005614 Bacteria 11143
16 Ga0068852_100043718 3300005616 Bacteria 3800
17 Ga0068852_100136225 3300005616 Bacteria 2267
18 Ga0068859_100048957 3300005617 Bacteria 4245
19 Ga0068851_10004526 3300005834 Bacteria 6271
20 Ga0068860_100000563 3300005843 Bacteria 44922
21 Ga0075365_10055107 3300006038 Bacteria 2638
22 Ga0075368_10001202 3300006042 Bacteria 8186
23 Ga0075368_10002563 3300006042 Bacteria 5956
24 Ga0075363_100000990 3300006048 Bacteria 10149
25 Ga0075364_10001334 3300006051 Bacteria 13287
26 Ga0075364_10008758 3300006051 Bacteria 6054
27 Ga0075364_10100326 3300006051 Bacteria 1927
28 Ga0075362_10000989 3300006177 Bacteria 8693
29 Ga0075362_10025371 3300006177 Bacteria 2523
30 Ga0075367_10002692 3300006178 Bacteria 8192
31 Ga0075367_10006139 3300006178 Bacteria 6045
32 Ga0075369_10000700 3300006186 Bacteria 10783
33 Ga0075369_10007221 3300006186 Bacteria 4224
34 Ga0075370_10000049 3300006353 Bacteria 36637
35 Ga0097620_100048957 3300006931 Bacteria 4245
36 Ga0105251_10057494 3300009011 Bacteria 1838
37 Ga0105240_10183215 3300009093 Bacteria 2470
38 Ga0105240_10226179 3300009093 Bacteria 2177
39 Ga0105247_10022197 3300009101 Bacteria 3821
40 Ga0105239_10007561 3300010375 Bacteria 12464
41 Ga0157370_10089032 3300013104 Bacteria 2899
42 Ga0157370_10133551 3300013104 Bacteria 2315
43 Ga0157369_10002174 3300013105 Bacteria 23614
44 Ga0157369_10016399 3300013105 Bacteria 8333
45 Ga0157372_10139408 3300013307 Bacteria 2793
46 Ga0163161_10079416 3300017792 Bacteria 2413
47 Ga0213875_10001481 3300021388 Bacteria 15116
48 Ga0213875_10002259 3300021388 Bacteria 11684
49 Ga0207713_1007091 3300025735 Bacteria 6705
50 Ga0207695_10010461 3300025913 Bacteria 11346
51 Ga0207695_10213645 3300025913 Bacteria 1839
52 Ga0207657_10004362 3300025919 Bacteria 14986
53 Ga0207657_10028731 3300025919 Bacteria 5068
54 Ga0207649_10000423 3300025920 Bacteria 31037
55 Ga0207694_10067605 3300025924 Bacteria 2789
56 Ga0207679_10027855 3300025945 Bacteria 3913
57 Ga0207667_10092429 3300025949 Bacteria 3124
58 Ga0207658_10020335 3300025986 Bacteria 4596
59 Ga0207639_10002196 3300026041 Bacteria 13144
60 Ga0207702_10000439 3300026078 Bacteria 47451
61 Ga0207702_10007086 3300026078 Bacteria 9591
62 Ga0207674_10064681 3300026116 Bacteria 3689
63 Ga0207698_10017140 3300026142 Bacteria 4907
64 Ga0209813_10000113 3300027866 Bacteria 29454
65 Ga0209813_10000691 3300027866 Bacteria 7694
66 Ga0268266_10000002 3300028379 Bacteria 3059047
67 Ga0268266_10083526 3300028379 Plasmid 2788
68 Ga0268264_10000078 3300028381 Bacteria 249595
69 Ga0265338_10001127 3300028800 Bacteria 44281
70 Ga0307405_10000419 3300031731 Bacteria 16006
71 Ga0307413_10039160 3300031824 Bacteria 2754
72 Ga0307410_10051271 3300031852 Bacteria 2780
73 Ga0307412_10000453 3300031911 Bacteria 24741
74 Ga0307409_100025058 3300031995 Bacteria 4175
75 Ga0307409_100344801 3300031995 Bacteria 1403
76 Ga0307416_100050634 3300032002 Bacteria 3312
77 Ga0307416_100349237 3300032002 Bacteria 1496
78 Ga0307414_10000248 3300032004 Bacteria 33977
79 Ga0307414_10006072 3300032004 Bacteria 6699
80 Ga0307411_10045126 3300032005 Bacteria 2833
81 Ga0307415_100170402 3300032126 Bacteria 1697
82 Ga0307415_100215890 3300032126 Bacteria 1534
83 Ga0395898_0001140 3300037466 Bacteria 40627
84 Ga0436364_0380874 3300037853 Bacteria 90281
85 Ga0436364_0537028 3300037853 Bacteria 12015
86 Ga0436365_0368436 3300039437 Bacteria 3906
87 Ga0495627_000190 3300046453 Bacteria 67645
88 Ga0495638_0000011 3300046460 Bacteria 442453
89 Ga0495583_0001457 3300046506 Bacteria 23902
90 Ga0495606_0009827 3300046507 Bacteria 8034
91 Ga0495608_0000322 3300046511 Bacteria 33792
92 Ga0495608_0003904 3300046511 Bacteria 10721
93 Ga0495610_0000389 3300046512 Bacteria 45473
94 Ga0495618_0000210 3300046514 Bacteria 42148
95 Ga0495643_0000007 3300046522 Bacteria 383435
96 Ga0495648_0000036 3300046524 Bacteria 195997
97 Ga0495652_0000599 3300046529 Bacteria 42136
98 Ga0495640_0002869 3300046533 Bacteria 13879
99 Ga0495667_0009168 3300046559 Bacteria 6721
100 Ga0495668_0008164 3300046616 Bacteria 6578
101 Ga0495625_0000933 3300046660 Bacteria 39271
102 Ga0495670_0000006 3300046691 Bacteria 255322
103 Ga0495671_0000054 3300046692 Bacteria 115885
104 Ga0495675_0014291 3300047444 Bacteria 5017
105 Ga0495673_0000158 3300047469 Bacteria 116122
106 Ga0496112_0036528 3300048915 Bacteria 4792
107 Ga0496113_0000256 3300048916 Bacteria 25073
108 Ga0496116_0015531 3300048919 Bacteria 6015
109 Ga0496117_0017349 3300048920 Bacteria 6015
110 Ga0496118_0019715 3300048921 Bacteria 6015
111 Ga0496119_0011066 3300048922 Bacteria 7517
112 Ga0496121_0016546 3300048924 Bacteria 7608
113 Ga0496121_0159785 3300048924 Bacteria 1649
114 Ga0496122_0013861 3300048925 Bacteria 7848
115 Ga0496124_0000956 3300048927 Bacteria 46054
116 Ga0496124_0001018 3300048927 Bacteria 44440
117 Ga0496124_0006008 3300048927 Bacteria 13387
118 Ga0496124_0018999 3300048927 Bacteria 6415
119 Ga0496124_0032668 3300048927 Bacteria 4591
120 Ga0496124_0082863 3300048927 Bacteria 2632
121 Ga0496125_0003736 3300048928 Bacteria 18125
122 Ga0496126_0000066 3300048929 Bacteria 252188
123 Ga0496126_0000543 3300048929 Bacteria 72785
124 Ga0501038_0000312 3300049574 Bacteria 41541
125 Ga0501046_0000010 3300049580 Bacteria 331082
126 Ga0501223_000143 3300049663 Bacteria 19816
127 Ga0501233_000006 3300049668 Bacteria 39891
128 Ga0501233_004588 3300049668 Bacteria 2538
129 Ga0501235_004012 3300049669 Bacteria 3187
130 Ga0501234_000184 3300049707 Bacteria 8722
131 Ga0501226_000105 3300049853 Bacteria 19836
132 nmdc:mga03683_21725_c1 3300050489 Bacteria 2479
133 nmdc:mga03683_733_c1 3300050489 Bacteria 9395
134 nmdc:mga03n38_15306_c1 3300050490 Bacteria 2960
135 nmdc:mga00v17_130_c1 3300050491 Bacteria 44108
136 nmdc:mga00v17_366_c1 3300050491 Bacteria 25605
137 nmdc:mga0yw44_29890_c1 3300050492 Bacteria 3151
138 nmdc:mga06z11_106_c1 3300050494 Bacteria 34599
139 nmdc:mga06z11_455_c1 3300050494 Bacteria 15241
140 nmdc:mga04h51_142_c1 3300050495 Bacteria 20781
141 nmdc:mga04h51_959_c1 3300050495 Bacteria 6657
142 nmdc:mga07m45_12_c1 3300050496 Bacteria 158130
143 nmdc:mga0sz30_1904_c1 3300050516 Bacteria 7449
144 nmdc:mga0sz30_3795_c1 3300050516 Bacteria 5443
145 nmdc:mga0sz30_865_c1 3300050516 Bacteria 10911
146 Ga0500607_000565 3300053121 Bacteria 35647
147 Ga0500618_004116 3300053125 Bacteria 4759
148 Ga0500622_0000208 3300053156 Bacteria 62297
149 Ga0500637_0000448 3300053178 Bacteria 15837
150 2511129535 2510917021 Bacteria 5705459
151 2600228716 2599185359 Bacteria 4772316
152 2694632011 2693429783 Bacteria 7019804
153 2738712754 2738541275 Bacteria 4830863
154 2738851178 2738541301 Bacteria 4834102
155 2738866908 2738541304 Bacteria 4833665
156 2739299425 2738543022 Bacteria 4835059
157 2739361104 2738543033 Bacteria 4833336
158 2753764758 2751185897 Bacteria 5322941
159 2848298953 2848297114 Bacteria 3608511
160 2879166724 2879163058 Bacteria 4223965
161 2935612108 2935608549 Bacteria 8203142
162 2935821581 2935819856 Bacteria 8261050
163 2990267836 2990265787 Bacteria 3943888
164 2993694923 2993693658 Bacteria 4040749
165 8016513740 8016511872 Bacteria 9921665
166 8055911077 8055909800 Bacteria 7278581
167 8056688086 8056681323 Bacteria 8472857
168 Ga0307408_100092234
169 JGI24741J21665_1003000
170 JGI24740J21852_10009920
171 JGI24739J22299_10000335
172 JGI24735J21928_10014544
173 Ga0070660_100003364
174 Ga0070661_100001506
175 Ga0070669_100002365
176 Ga0070667_100029587
177 Ga0068853_100001955
178 Ga0068853_100106187
179 Ga0070665_100000316
180 Ga0070664_100088332
181 Ga0068856_100003457
182 Ga0068856_100006853
183 Ga0068852_100043718
184 Ga0068852_100136225
185 Ga0068859_100048957
186 Ga0068851_10004526
187 Ga0068860_100000563
188 Ga0075365_10055107
189 Ga0075368_10001202
190 Ga0075368_10002563
191 Ga0075363_100000990
192 Ga0075364_10001334
193 Ga0075364_10008758
194 Ga0075364_10100326
195 Ga0075362_10000989
196 Ga0075362_10025371
197 Ga0075367_10002692
198 Ga0075367_10006139
199 Ga0075369_10000700
200 Ga0075369_10007221
201 Ga0075370_10000049
202 Ga0097620_100048957
203 Ga0105251_10057494
204 Ga0105240_10183215
205 Ga0105240_10226179
206 Ga0105247_10022197
207 Ga0105239_10007561
208 Ga0157370_10089032
209 Ga0157370_10133551
210 Ga0157369_10002174
211 Ga0157369_10016399
212 Ga0157372_10139408
213 Ga0163161_10079416
214 Ga0213875_10001481
215 Ga0213875_10002259
216 Ga0207713_1007091
217 Ga0207695_10010461
218 Ga0207695_10213645
219 Ga0207657_10004362
220 Ga0207657_10028731
221 Ga0207649_10000423
222 Ga0207694_10067605
223 Ga0207679_10027855
224 Ga0207667_10092429
225 Ga0207658_10020335
226 Ga0207639_10002196
227 Ga0207702_10000439
228 Ga0207702_10007086
229 Ga0207674_10064681
230 Ga0207698_10017140
231 Ga0209813_10000113
232 Ga0209813_10000691
233 Ga0268266_10000002
234 Ga0268266_10083526
235 Ga0268264_10000078
236 Ga0265338_10001127
237 Ga0307405_10000419
238 Ga0307413_10039160
239 Ga0307410_10051271
240 Ga0307412_10000453
241 Ga0307409_100025058
242 Ga0307409_100344801
243 Ga0307416_100050634
244 Ga0307416_100349237
245 Ga0307414_10000248
246 Ga0307414_10006072
247 Ga0307411_10045126
248 Ga0307415_100170402
249 Ga0307415_100215890
250 Ga0395898_0001140
251 Ga0436364_0380874
252 Ga0436364_0537028
253 Ga0436365_0368436
254 Ga0495627_000190
255 Ga0495638_0000011
256 Ga0495583_0001457
257 Ga0495606_0009827
258 Ga0495608_0000322
259 Ga0495608_0003904
260 Ga0495610_0000389
261 Ga0495618_0000210
262 Ga0495643_0000007
263 Ga0495648_0000036
264 Ga0495652_0000599
265 Ga0495640_0002869
266 Ga0495667_0009168
267 Ga0495668_0008164
268 Ga0495625_0000933
269 Ga0495670_0000006
270 Ga0495671_0000054
271 Ga0495675_0014291
272 Ga0495673_0000158
273 Ga0496112_0036528
274 Ga0496113_0000256
275 Ga0496116_0015531
276 Ga0496117_0017349
277 Ga0496118_0019715
278 Ga0496119_0011066
279 Ga0496121_0016546
280 Ga0496121_0159785
281 Ga0496122_0013861
282 Ga0496124_0000956
283 Ga0496124_0001018
284 Ga0496124_0006008
285 Ga0496124_0018999
286 Ga0496124_0032668
287 Ga0496124_0082863
288 Ga0496125_0003736
289 Ga0496126_0000066
290 Ga0496126_0000543
291 Ga0501038_0000312
292 Ga0501046_0000010
293 Ga0501223_000143
294 Ga0501233_000006
295 Ga0501233_004588
296 Ga0501235_004012
297 Ga0501234_000184
298 Ga0501226_000105
299 nmdc:mga03683_21725_c1
300 nmdc:mga03683_733_c1
301 nmdc:mga03n38_15306_c1
302 nmdc:mga00v17_130_c1
303 nmdc:mga00v17_366_c1
304 nmdc:mga0yw44_29890_c1
305 nmdc:mga06z11_106_c1
306 nmdc:mga06z11_455_c1
307 nmdc:mga04h51_142_c1
308 nmdc:mga04h51_959_c1
309 nmdc:mga07m45_12_c1
310 nmdc:mga0sz30_1904_c1
311 nmdc:mga0sz30_3795_c1
312 nmdc:mga0sz30_865_c1
313 Ga0500607_000565
314 Ga0500618_004116
315 Ga0500622_0000208
316 Ga0500637_0000448
317 2511129535
318 2600228716
319 2694632011
320 2738712754
321 2738851178
322 2738866908
323 2739299425
324 2739361104
325 2753764758
326 2848298953
327 2879166724
328 2935612108
329 2935821581
330 2990267836
331 2993694923
332 8016513740
333 8055911077
334 8056688086

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22022

Phage_int_M

Phage integrase central domain

177

272

0.99

PF13356

Arm-DNA-bind_3

Arm DNA-binding domain

80

165

0.92

PF00589

Phage_integrase

Phage integrase family

285

451

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ju0-assembly1.cif.gz_A structure of the arm-type binding domain of hai7 integrase 0.986 1 82
3rmp-assembly1.cif.gz_C structural basis for the recognition of attp substrates by p4-like integrases 0.97 1 75
3jtz-assembly1.cif.gz_A structure of the arm-type binding domain of hpi integrase 0.9608 1 75
3rmp-assembly1.cif.gz_C structural basis for the recognition of attp substrates by p4-like integrases 0.9327 1 75
3jtz-assembly1.cif.gz_A structure of the arm-type binding domain of hpi integrase 0.9251 1 75
ID Description Score Start End Superfamily
af_P39347_1_63_3.30.160.390 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.9959 27 86 3.30.160.390
3ju0A00 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.986 1 82 3.30.160.390
3rmpC00 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.97 1 75 3.30.160.390
af_P32053_7_95_3.30.160.390 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.9668 1 86 3.30.160.390
af_P32053_96_209_1.10.150.130 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.9584 89 200 1.10.150.130
ID Description Score Start End GO Terms
AF-A0A2N2SR13-F1-model_v4 Integrase 0.9978 2 64 GO:0015074
AF-A0A1W9USZ0-F1-model_v4 Integrase 0.9976 1 81 GO:0015074
AF-A0A5R2N9Z7-F1-model_v4 DUF4102 domain-containing protein 0.9955 2 81 GO:0015074
AF-A0A855SN59-F1-model_v4 deleted 0.9954 2 81
AF-A0A6M0D283-F1-model_v4 DUF4102 domain-containing protein 0.9946 2 80 GO:0015074

Map