F264388

General Info

Members Datasets Scaffolds Average Seq Length
174 131 348 700

Family's Representative Sequence

Representative Sequence 3300006880|Ga0075429_100008186|Ga0075429_1000081864
Length 724
Sequence MPPCVFSPHQTLEDDMKTPTTLISAVPLAAAIAGSSLIAQSGSSNPPLAAKLPHTTQIHGYTLSDDYFWLRQKANPDVTRYLEAENTYTEEVMRPTKDLQETLYKEMLGRIKQTDLSVPSRIGEHFYYSRTEEGRQYPYMCRRQGSMTGPEEVLLDLNKLAEGHKFLGLGAYTVSDDANWLAYSLDTTGYRQFVLHVKDLRNGKESIERIERVGPVVWATDNKTLIYSTEDAVSKRSDKVFRHVVGEADSQLIFEERDELFDVYATRSLDKKMIFLNSAAKTANEVRYIPAATVVAAREAGHEYDVDHYKGDLYVTTNRAAKNFRVVKAPVADPSEKNWTPFIEHKPAVRIGGLTFFANHLVVSEREGGLSYLRVIDMRTRASHRITTEEPDYALSLAANPEFETTDVRFNYQSMVTPASVYDYDLNTRQRTLLKRTEVLGGYDPANYESKRIWSVSRDGTKVPVSMVYRKGTKIDGTAPMLLYAYGSYGASQSPTFSSNRLSLLDRGVIYALANIRGGGELGEEWREQGRMMQKMNTFTDFIDAAEYLIKNKYTAPDRLVIQGGSAGGLLMGAVVNMRPDLFKASVAQVPFVDVINTMLDASLPLTTSEYIEWGNPNTKADFDYMMKYSPYDNIKAQRYPSMLVHVSLNDSQVPYWEGAKFVARLRVTKTDANPLLLKTNLGAGHGGASGRYDALRELAFTYSYMLWQMGVASSPSGSDAPAR

Samples

Sample ID Description Type Environment
1 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
2 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
3 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
9 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
10 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
11 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
14 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
15 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
16 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
17 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
20 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
21 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
22 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
25 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
26 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
28 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
29 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
30 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
31 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
32 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
33 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
34 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
38 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
39 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
43 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
44 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
45 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
46 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
47 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
48 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300027395 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes) (version 2) Metagenome Rhizosphere
67 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
68 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
69 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
71 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
72 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
73 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
74 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
75 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
76 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
77 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
78 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
79 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
80 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
81 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
82 3300042001 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z081617_5542 Metagenome Rhizosphere
83 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
84 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
85 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
86 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
87 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
88 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
89 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
90 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
91 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
92 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
93 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
94 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
95 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
96 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
97 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
98 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
99 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
100 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
101 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
102 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
103 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
104 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
105 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
106 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
107 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
110 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
111 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
112 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
113 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
114 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
115 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
116 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
117 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
118 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
119 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
120 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
121 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
122 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
123 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
124 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
125 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
126 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
127 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
128 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
129 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
130 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
131 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.15
Nodule 0
Rhizoplane 1.72
Rhizosphere 93.1
Stem 0
Stem Tuber 0
Unclassified 1.15

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075429_100008186 3300006880 Bacteria 9088
2 Ga0065712_10077917 3300005290 Bacteria 3425
3 Ga0065715_10097098 3300005293 Bacteria 3763
4 Ga0070658_10002165 3300005327 Bacteria 16474
5 Ga0068868_100104387 3300005338 Bacteria 2297
6 Ga0070689_100012897 3300005340 Bacteria 6034
7 Ga0070689_100017490 3300005340 Bacteria 5266
8 Ga0070675_100006757 3300005354 Bacteria 8815
9 Ga0070673_100056975 3300005364 Bacteria 3086
10 Ga0070688_100013718 3300005365 Bacteria 4578
11 Ga0070714_100016337 3300005435 Bacteria 5990
12 Ga0070711_100000013 3300005439 Bacteria 161148
13 Ga0070681_10008553 3300005458 Bacteria 10026
14 Ga0070699_100000102 3300005518 Bacteria 80731
15 Ga0070699_100102815 3300005518 Bacteria 2505
16 Ga0070697_100000176 3300005536 Bacteria 52306
17 Ga0070696_100007451 3300005546 Bacteria 7320
18 Ga0070693_100002643 3300005547 Bacteria 8249
19 Ga0070704_100003702 3300005549 Bacteria 8803
20 Ga0068855_100011598 3300005563 Bacteria 10647
21 Ga0068855_100025357 3300005563 Bacteria 7095
22 Ga0068855_100040422 3300005563 Bacteria 5535
23 Ga0068855_100043315 3300005563 Bacteria 5332
24 Ga0068852_100011771 3300005616 Bacteria 6605
25 Ga0068851_10001863 3300005834 Bacteria 9258
26 Ga0068870_10019239 3300005840 Bacteria 3310
27 Ga0068858_100110665 3300005842 Bacteria 2564
28 Ga0068860_100043319 3300005843 Bacteria 4294
29 Ga0081539_10002563 3300005985 Bacteria 25192
30 Ga0075366_10020982 3300006195 Bacteria 3796
31 Ga0097621_100020679 3300006237 Bacteria 5075
32 Ga0068871_100038589 3300006358 Bacteria 3815
33 Ga0075428_100000306 3300006844 Bacteria 48154
34 Ga0075428_100005304 3300006844 Bacteria 14331
35 Ga0075428_100007125 3300006844 Bacteria 12384
36 Ga0075428_100008269 3300006844 Bacteria 11535
37 Ga0075430_100000521 3300006846 Bacteria 28940
38 Ga0075430_100012206 3300006846 Bacteria 7315
39 Ga0075431_100039834 3300006847 Bacteria 4841
40 Ga0075434_100021574 3300006871 Bacteria 6261
41 Ga0075429_100000996 3300006880 Bacteria 22519
42 Ga0075429_100029338 3300006880 Bacteria 4778
43 Ga0075436_100000655 3300006914 Bacteria 22807
44 Ga0075435_100055481 3300007076 Unclassified 3200
45 Ga0111539_10000287 3300009094 Bacteria 60656
46 Ga0111539_10001719 3300009094 Bacteria 29155
47 Ga0111539_10042161 3300009094 Bacteria 5484
48 Ga0111539_10071288 3300009094 Bacteria 4100
49 Ga0111539_10159994 3300009094 Bacteria 2634
50 Ga0105245_10085477 3300009098 Bacteria 2892
51 Ga0114129_10000369 3300009147 Bacteria 52251
52 Ga0114129_10005998 3300009147 Bacteria 17218
53 Ga0114129_10007049 3300009147 Bacteria 16000
54 Ga0114129_10064406 3300009147 Bacteria 5115
55 Ga0114129_10097673 3300009147 Bacteria 4066
56 Ga0105243_10057062 3300009148 Bacteria 3108
57 Ga0105241_10023708 3300009174 Bacteria 4552
58 Ga0105242_10005290 3300009176 Bacteria 9963
59 Ga0105242_10007416 3300009176 Bacteria 8445
60 Ga0105242_10009594 3300009176 Bacteria 7418
61 Ga0105248_10012144 3300009177 Bacteria 9501
62 Ga0105248_10085791 3300009177 Bacteria 3543
63 Ga0105238_10003850 3300009551 Bacteria 14901
64 Ga0157370_10007293 3300013104 Bacteria 12064
65 Ga0157369_10008055 3300013105 Bacteria 12084
66 Ga0163162_10023855 3300013306 Bacteria 6037
67 Ga0157372_10005919 3300013307 Bacteria 13021
68 Ga0157372_10089411 3300013307 Bacteria 3499
69 Ga0157380_10002113 3300014326 Bacteria 13327
70 Ga0157380_10068081 3300014326 Bacteria 2869
71 Ga0157376_10114926 3300014969 Bacteria 2375
72 Ga0207656_10000984 3300025321 Bacteria 9294
73 Ga0207688_10014965 3300025901 Bacteria 4210
74 Ga0207643_10014713 3300025908 Bacteria 4255
75 Ga0207705_10011456 3300025909 Bacteria 6416
76 Ga0207663_10000020 3300025916 Bacteria 137200
77 Ga0207681_10034698 3300025923 Bacteria 3319
78 Ga0207694_10054861 3300025924 Bacteria 3093
79 Ga0207687_10012898 3300025927 Bacteria 5462
80 Ga0207664_10067044 3300025929 Bacteria 2879
81 Ga0207686_10004167 3300025934 Bacteria 7757
82 Ga0207686_10009412 3300025934 Bacteria 5300
83 Ga0207691_10014624 3300025940 Bacteria 7481
84 Ga0207711_10111310 3300025941 Bacteria 2435
85 Ga0207689_10000994 3300025942 Bacteria 27172
86 Ga0207661_10058732 3300025944 Bacteria 3097
87 Ga0207667_10043070 3300025949 Bacteria 4792
88 Ga0207641_10023758 3300026088 Bacteria 5052
89 Ga0207675_100006364 3300026118 Bacteria 11195
90 Ga0207675_100135691 3300026118 Bacteria 2335
91 Ga0207698_10004002 3300026142 Bacteria 8939
92 Ga0209996_1000958 3300027395 Bacteria 3422
93 Ga0209966_1000001 3300027695 Bacteria 139125
94 Ga0207428_10000307 3300027907 Bacteria 64817
95 Ga0207428_10018977 3300027907 Bacteria 5864
96 Ga0207428_10067536 3300027907 Bacteria 2815
97 Ga0268265_10060452 3300028380 Plasmid 2904
98 Ga0307408_100023710 3300031548 Bacteria 4183
99 Ga0307416_100104123 3300032002 Bacteria 2480
100 Ga0307411_10023993 3300032005 Bacteria 3627
101 Ga0373926_0005726 3300035083 Bacteria 4103
102 Ga0373947_0020141 3300035725 Bacteria 3850
103 Ga0373937_0039218 3300036401 Bacteria 4317
104 Ga0373925_0045596 3300037068 Bacteria 3257
105 Ga0395899_0061148 3300037312 Bacteria 2774
106 Ga0395905_0011309 3300037471 Bacteria 8631
107 Ga0400483_027033 3300039062 Bacteria 4383
108 Ga0400483_063351 3300039062 Bacteria 4113
109 Ga0400483_142300 3300039062 Bacteria 13336
110 Ga0400483_152224 3300039062 Bacteria 20021
111 Ga0400483_240911 3300039062 Bacteria 13844
112 Ga0400483_288983 3300039062 Bacteria 17119
113 Ga0436365_0140649 3300039437 Bacteria 5838
114 Ga0439453_0002622 3300041408 Bacteria 2501
115 Ga0439441_000634 3300042001 Bacteria 3983
116 Ga0439464_0001226 3300042439 Bacteria 5965
117 Ga0453683_0004518 3300044673 Bacteria 9854
118 Ga0466957_0002946 3300044842 Bacteria 9225
119 Ga0466958_0019993 3300045836 Bacteria 3902
120 Ga0495592_0098908 3300046454 Bacteria 2082
121 Ga0495651_0068309 3300046462 Bacteria 2709
122 Ga0495653_0007147 3300046463 Bacteria 9148
123 Ga0495653_0017409 3300046463 Bacteria 5845
124 Ga0495630_0003116 3300046517 Bacteria 11495
125 Ga0495652_0022943 3300046529 Bacteria 5535
126 Ga0495665_0019463 3300046531 Bacteria 3651
127 Ga0495586_0003216 3300046535 Bacteria 8776
128 Ga0495587_0006129 3300046536 Bacteria 7847
129 Ga0495621_0006260 3300046539 Bacteria 3464
130 Ga0495623_0022672 3300046679 Bacteria 4053
131 Ga0495646_0023641 3300046680 Bacteria 3868
132 Ga0495624_0014328 3300046690 Bacteria 5383
133 Ga0495600_0001156 3300046809 Bacteria 14402
134 Ga0495674_0011873 3300047319 Bacteria 8210
135 Ga0495680_0008170 3300047322 Bacteria 9541
136 Ga0495675_0000035 3300047444 Bacteria 95152
137 Ga0495675_0010949 3300047444 Bacteria 5683
138 Ga0495602_0017598 3300048088 Bacteria 7161
139 Ga0495602_0089192 3300048088 Bacteria 2565
140 Ga0496104_0006762 3300048907 Bacteria 10101
141 Ga0496109_0061292 3300048912 Bacteria 3439
142 Ga0496110_0071169 3300048913 Bacteria 3083
143 Ga0501041_0019339 3300049577 Bacteria 4067
144 Ga0501047_0016597 3300049581 Bacteria 7029
145 Ga0501067_0021791 3300049583 Bacteria 3546
146 Ga0501069_0001213 3300049585 Bacteria 12570
147 Ga0501070_0000550 3300049586 Bacteria 34331
148 Ga0501071_0026608 3300049587 Bacteria 4062
149 Ga0501073_0003110 3300049589 Bacteria 12432
150 Ga0501074_0007403 3300049590 Bacteria 7941
151 Ga0501076_0094810 3300049592 Bacteria 2403
152 Ga0501076_0143132 3300049592 Bacteria 1943
153 Ga0501079_0003123 3300049741 Bacteria 12132
154 Ga0501080_0004670 3300049742 Bacteria 12219
155 Ga0501081_0086915 3300049743 Bacteria 2196
156 Ga0501045_0014515 3300049824 Bacteria 5583
157 nmdc:mga05p37_5492_c1 3300050507 Bacteria 14892
158 nmdc:mga05p37_62_c1 3300050507 Bacteria 94760
159 nmdc:mga05p37_75422_c1 3300050507 Bacteria 4151
160 nmdc:mga05p37_78744_c1 3300050507 Bacteria 4059
161 nmdc:mga09592_7891_c1 3300050508 Bacteria 8652
162 nmdc:mga0qj67_24051_c1 3300050509 Bacteria 4693
163 nmdc:mga0qj67_38408_c1 3300050509 Bacteria 3756
164 nmdc:mga06r32_55334_c1 3300050510 Bacteria 3806
165 nmdc:mga06r32_61741_c1 3300050510 Bacteria 3608
166 nmdc:mga08y16_1082_c1 3300050511 Bacteria 26818
167 nmdc:mga08y16_4425_c1 3300050511 Bacteria 14679
168 nmdc:mga0rr50_39957_c1 3300050513 Unclassified 3407
169 nmdc:mga08x19_10_c1 3300050514 Bacteria 404490
170 Ga0495595_0011711 3300053084 Bacteria 3672
171 Ga0500641_0010855 3300053096 Bacteria 3301
172 Ga0590075_009409 3300059424 Bacteria 2341
173 Ga0501082_0041079 3300060353 Bacteria 3988
174 Ga0530510_0002192 3300061734 Bacteria 13393
175 Ga0075429_100008186
176 Ga0065712_10077917
177 Ga0065715_10097098
178 Ga0070658_10002165
179 Ga0068868_100104387
180 Ga0070689_100012897
181 Ga0070689_100017490
182 Ga0070675_100006757
183 Ga0070673_100056975
184 Ga0070688_100013718
185 Ga0070714_100016337
186 Ga0070711_100000013
187 Ga0070681_10008553
188 Ga0070699_100000102
189 Ga0070699_100102815
190 Ga0070697_100000176
191 Ga0070696_100007451
192 Ga0070693_100002643
193 Ga0070704_100003702
194 Ga0068855_100011598
195 Ga0068855_100025357
196 Ga0068855_100040422
197 Ga0068855_100043315
198 Ga0068852_100011771
199 Ga0068851_10001863
200 Ga0068870_10019239
201 Ga0068858_100110665
202 Ga0068860_100043319
203 Ga0081539_10002563
204 Ga0075366_10020982
205 Ga0097621_100020679
206 Ga0068871_100038589
207 Ga0075428_100000306
208 Ga0075428_100005304
209 Ga0075428_100007125
210 Ga0075428_100008269
211 Ga0075430_100000521
212 Ga0075430_100012206
213 Ga0075431_100039834
214 Ga0075434_100021574
215 Ga0075429_100000996
216 Ga0075429_100029338
217 Ga0075436_100000655
218 Ga0075435_100055481
219 Ga0111539_10000287
220 Ga0111539_10001719
221 Ga0111539_10042161
222 Ga0111539_10071288
223 Ga0111539_10159994
224 Ga0105245_10085477
225 Ga0114129_10000369
226 Ga0114129_10005998
227 Ga0114129_10007049
228 Ga0114129_10064406
229 Ga0114129_10097673
230 Ga0105243_10057062
231 Ga0105241_10023708
232 Ga0105242_10005290
233 Ga0105242_10007416
234 Ga0105242_10009594
235 Ga0105248_10012144
236 Ga0105248_10085791
237 Ga0105238_10003850
238 Ga0157370_10007293
239 Ga0157369_10008055
240 Ga0163162_10023855
241 Ga0157372_10005919
242 Ga0157372_10089411
243 Ga0157380_10002113
244 Ga0157380_10068081
245 Ga0157376_10114926
246 Ga0207656_10000984
247 Ga0207688_10014965
248 Ga0207643_10014713
249 Ga0207705_10011456
250 Ga0207663_10000020
251 Ga0207681_10034698
252 Ga0207694_10054861
253 Ga0207687_10012898
254 Ga0207664_10067044
255 Ga0207686_10004167
256 Ga0207686_10009412
257 Ga0207691_10014624
258 Ga0207711_10111310
259 Ga0207689_10000994
260 Ga0207661_10058732
261 Ga0207667_10043070
262 Ga0207641_10023758
263 Ga0207675_100006364
264 Ga0207675_100135691
265 Ga0207698_10004002
266 Ga0209996_1000958
267 Ga0209966_1000001
268 Ga0207428_10000307
269 Ga0207428_10018977
270 Ga0207428_10067536
271 Ga0268265_10060452
272 Ga0307408_100023710
273 Ga0307416_100104123
274 Ga0307411_10023993
275 Ga0373926_0005726
276 Ga0373947_0020141
277 Ga0373937_0039218
278 Ga0373925_0045596
279 Ga0395899_0061148
280 Ga0395905_0011309
281 Ga0400483_027033
282 Ga0400483_063351
283 Ga0400483_142300
284 Ga0400483_152224
285 Ga0400483_240911
286 Ga0400483_288983
287 Ga0436365_0140649
288 Ga0439453_0002622
289 Ga0439441_000634
290 Ga0439464_0001226
291 Ga0453683_0004518
292 Ga0466957_0002946
293 Ga0466958_0019993
294 Ga0495592_0098908
295 Ga0495651_0068309
296 Ga0495653_0007147
297 Ga0495653_0017409
298 Ga0495630_0003116
299 Ga0495652_0022943
300 Ga0495665_0019463
301 Ga0495586_0003216
302 Ga0495587_0006129
303 Ga0495621_0006260
304 Ga0495623_0022672
305 Ga0495646_0023641
306 Ga0495624_0014328
307 Ga0495600_0001156
308 Ga0495674_0011873
309 Ga0495680_0008170
310 Ga0495675_0000035
311 Ga0495675_0010949
312 Ga0495602_0017598
313 Ga0495602_0089192
314 Ga0496104_0006762
315 Ga0496109_0061292
316 Ga0496110_0071169
317 Ga0501041_0019339
318 Ga0501047_0016597
319 Ga0501067_0021791
320 Ga0501069_0001213
321 Ga0501070_0000550
322 Ga0501071_0026608
323 Ga0501073_0003110
324 Ga0501074_0007403
325 Ga0501076_0094810
326 Ga0501076_0143132
327 Ga0501079_0003123
328 Ga0501080_0004670
329 Ga0501081_0086915
330 Ga0501045_0014515
331 nmdc:mga05p37_5492_c1
332 nmdc:mga05p37_62_c1
333 nmdc:mga05p37_75422_c1
334 nmdc:mga05p37_78744_c1
335 nmdc:mga09592_7891_c1
336 nmdc:mga0qj67_24051_c1
337 nmdc:mga0qj67_38408_c1
338 nmdc:mga06r32_55334_c1
339 nmdc:mga06r32_61741_c1
340 nmdc:mga08y16_1082_c1
341 nmdc:mga08y16_4425_c1
342 nmdc:mga0rr50_39957_c1
343 nmdc:mga08x19_10_c1
344 Ga0495595_0011711
345 Ga0500641_0010855
346 Ga0590075_009409
347 Ga0501082_0041079
348 Ga0530510_0002192

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00326

Peptidase_S9

Prolyl oligopeptidase family

495

713

0.97

PF02897

Peptidase_S9_N

Prolyl oligopeptidase, N-terminal beta-propeller domain

46

437

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
7ywp-assembly1.cif.gz_A closed conformation of oligopeptidase b from serratia proteomaculans with covalently bound tck 0.9737 1 671
7ywp-assembly1.cif.gz_A closed conformation of oligopeptidase b from serratia proteomaculans with covalently bound tck 0.9652 1 671
7ne4-assembly1.cif.gz_A e125a mutant of oligopeptidase b from s. proteomaculans with modified hinge region 0.9639 1 672
7ne5-assembly1.cif.gz_A catalytically non active s532a mutant of oligopeptidase b from s. proteomaculans with modified hinge region 0.9623 1 672
7yx7-assembly1.cif.gz_A modified oligopeptidase b from s. proteomaculans in intermediate conformation with 1 spermine molecule at 1.72 a resolution 0.9598 1 672
ID Description Score Start End Superfamily
af_Q4D6H1_442_707_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.979 410 672 3.40.50.1820
4bp9B01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.9767 402 673 3.40.50.1820
af_P24555_408_681_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.9763 404 676 3.40.50.1820
af_A0A0R0KWG6_523_785_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.9709 410 667 3.40.50.1820
af_P24555_408_681_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.9693 404 676 3.40.50.1820
ID Description Score Start End GO Terms
AF-A0A2E5E2A3-F1-model_v4 Oligopeptidase B (EC 3.4.21.83) 0.9864 1 675 GO:0004252
GO:0006508
AF-A0A7V8QE95-F1-model_v4 S9 family peptidase 0.986 3 676 GO:0004252
GO:0006508
AF-A0A354Y1N2-F1-model_v4 Oligopeptidase B (EC 3.4.21.83) 0.986 465 673 GO:0004252
GO:0006508
AF-A0A3D4CSH3-F1-model_v4 Peptidase S9 prolyl oligopeptidase catalytic domain-containing protein 0.9856 459 671 GO:0004252
GO:0006508
AF-A0A1Q9NIG0-F1-model_v4 Protease 2 (EC 3.4.21.83) 0.9855 1 673 GO:0004252
GO:0006508

Map