F263581

General Info

Members Datasets Scaffolds Average Seq Length
173 138 346 158

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2884994152|2884997347
Length 179
Sequence AGSGDVHGAAAGATPEVPEAREVSDGERRSAAALEASGIGYAITRHGPVRSLAEAAAARGVEPADIVKTIVVRRGDDDFLFVLVPGDRTISWPRLRALLGVSRLSMPDAATARDVTGYERGTITPFGSLTAWPVVADSRVPDRAVSIGAGAHGVAATVDGADLVRALDATVADVTEPEG

Samples

Sample ID Description Type Environment
1 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
2 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
3 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
4 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
5 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
6 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
7 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
8 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
9 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
10 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
11 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
12 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
13 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
14 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
15 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
16 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
17 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
18 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
19 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
20 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
21 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
22 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
23 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
24 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
25 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
26 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
27 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
28 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
29 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
30 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
46 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
47 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
48 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
49 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
50 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
51 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
52 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
53 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
54 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
55 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
56 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
57 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
58 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
59 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
60 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
61 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
62 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
63 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
64 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
65 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
66 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
67 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
68 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
69 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
70 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
71 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
72 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
73 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
74 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
75 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
76 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
77 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
78 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
79 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
80 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
81 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
82 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
83 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
84 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
85 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
86 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
87 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
88 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
89 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
90 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
91 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
92 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
93 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
94 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
95 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
110 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
111 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
112 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
113 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
114 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
115 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
116 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
117 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
118 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
119 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
121 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
122 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
123 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
124 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
125 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
126 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
127 2884994152 Cellulomonas sp. H30R-01 Isolate Rhizosphere
128 2643221567 Phycicoccus sp. Root563 Isolate Unclassified
129 2643221613 Oerskovia sp. Root22 Isolate Unclassified
130 2643221624 Phycicoccus sp. Root101 Isolate Unclassified
131 2643221679 Angustibacter sp. Root456 Isolate Unclassified
132 2643221694 Cellulomonas sp. Root137 Isolate Unclassified
133 2643221721 Oerskovia sp. Root918 Isolate Unclassified
134 2643221961 Aeromicrobium sp. Root236 Isolate Unclassified
135 2643221962 Aeromicrobium sp. Root344 Isolate Unclassified
136 2808606365 Phycicoccus sp. SLBN-51 Isolate Unclassified
137 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
138 2935890801 Oerskovia enterophila 3230 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.06
Metatranscriptomes 0
Isolates 6.94

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 7.51
Rhizosphere 82.66
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10409980 3300005327 Bacteria 1164
2 Ga0068869_101062898 3300005334 Bacteria 707
3 Ga0070660_100146046 3300005339 Bacteria 1900
4 Ga0070675_100966066 3300005354 Bacteria 782
5 Ga0070674_100146849 3300005356 Bacteria 1776
6 Ga0070673_100275585 3300005364 Bacteria 1474
7 Ga0070659_100647188 3300005366 Bacteria 911
8 Ga0070678_100023640 3300005456 Bacteria 4099
9 Ga0070679_100015998 3300005530 Bacteria 7225
10 Ga0070679_100764543 3300005530 Bacteria 909
11 Ga0070684_100669529 3300005535 Bacteria 967
12 Ga0070672_100341182 3300005543 Bacteria 1276
13 Ga0068856_101725950 3300005614 Bacteria 638
14 Ga0068861_100850190 3300005719 Bacteria 860
15 Ga0068870_10149100 3300005840 Bacteria 1376
16 Ga0075428_100000545 3300006844 Bacteria 38500
17 Ga0075431_100023337 3300006847 Bacteria 6328
18 Ga0075431_100521209 3300006847 Bacteria 1178
19 Ga0075429_100181872 3300006880 Bacteria 1842
20 Ga0075429_100867234 3300006880 Bacteria 790
21 Ga0105240_11359343 3300009093 Bacteria 748
22 Ga0105245_12563591 3300009098 Bacteria 563
23 Ga0114129_10046054 3300009147 Bacteria 6130
24 Ga0105243_10120821 3300009148 Bacteria 2208
25 Ga0105242_10341451 3300009176 Bacteria 1380
26 Ga0105238_10364692 3300009551 Bacteria 1434
27 Ga0105239_10479561 3300010375 Bacteria 1413
28 Ga0105239_11232647 3300010375 Bacteria 862
29 Ga0105246_10147110 3300011119 Bacteria 1779
30 Ga0157372_10052911 3300013307 Bacteria 4523
31 Ga0157372_12262432 3300013307 Bacteria 624
32 Ga0163163_11355099 3300014325 Bacteria 773
33 Ga0182008_10351322 3300014497 Bacteria 782
34 Ga0157377_10289926 3300014745 Bacteria 1076
35 Ga0207688_10094345 3300025901 Bacteria 1721
36 Ga0207643_10116103 3300025908 Bacteria 1581
37 Ga0207705_10261007 3300025909 Bacteria 1323
38 Ga0207705_10371013 3300025909 Bacteria 1105
39 Ga0207707_10012959 3300025912 Bacteria 7259
40 Ga0207657_10106803 3300025919 Bacteria 2316
41 Ga0207657_10602979 3300025919 Bacteria 857
42 Ga0207652_10040285 3300025921 Bacteria 3967
43 Ga0207659_10817761 3300025926 Bacteria 801
44 Ga0207690_10538378 3300025932 Bacteria 948
45 Ga0207709_10376331 3300025935 Bacteria 1079
46 Ga0207669_10081812 3300025937 Bacteria 2071
47 Ga0207677_10218807 3300026023 Bacteria 1526
48 Ga0207703_10196928 3300026035 Bacteria 1788
49 Ga0207678_10223799 3300026067 Bacteria 1611
50 Ga0207683_10101939 3300026121 Bacteria 2563
51 Ga0207683_10398288 3300026121 Bacteria 1266
52 Ga0268266_10326794 3300028379 Bacteria 1437
53 Ga0316575_10010524 3300031665 Bacteria 3402
54 Ga0316579_10006866 3300031691 Bacteria 4670
55 Ga0316576_10006527 3300031727 Bacteria 7268
56 Ga0316576_10219538 3300031727 Bacteria 1430
57 Ga0316576_10533093 3300031727 Bacteria 861
58 Ga0307405_10107266 3300031731 Bacteria 1885
59 Ga0307413_10281203 3300031824 Bacteria 1252
60 Ga0307413_10459042 3300031824 Bacteria 1013
61 Ga0307410_10408351 3300031852 Bacteria 1099
62 Ga0307406_10402123 3300031901 Bacteria 1086
63 Ga0307407_10073566 3300031903 Bacteria 2042
64 Ga0307412_10621195 3300031911 Bacteria 918
65 Ga0307409_100010764 3300031995 Bacteria 5714
66 Ga0307409_100147585 3300031995 Bacteria 2036
67 Ga0307409_101425503 3300031995 Bacteria 719
68 Ga0307416_100155287 3300032002 Bacteria 2106
69 Ga0307416_100659161 3300032002 Bacteria 1132
70 Ga0307416_101218652 3300032002 Bacteria 858
71 Ga0307416_101646926 3300032002 Bacteria 747
72 Ga0307414_10771184 3300032004 Bacteria 875
73 Ga0307411_11111189 3300032005 Bacteria 713
74 Ga0307415_100649189 3300032126 Bacteria 946
75 Ga0316574_0047970 3300035398 Bacteria 2651
76 Ga0316584_0029639 3300036712 Bacteria 4040
77 Ga0373925_0115288 3300037068 Bacteria 2080
78 Ga0395899_0332243 3300037312 Bacteria 1021
79 Ga0395898_0042080 3300037466 Bacteria 4509
80 Ga0395898_0242233 3300037466 Bacteria 1720
81 Ga0436364_0948333 3300037853 Bacteria 701
82 Ga0395901_0007438 3300038443 Bacteria 11053
83 Ga0395901_0208181 3300038443 Bacteria 2048
84 Ga0451791_1161680 3300041451 Bacteria 1861
85 Ga0439435_0067586 3300042436 Bacteria 1053
86 Ga0466960_0053999 3300044901 Bacteria 1949
87 Ga0466967_0068722 3300045976 Bacteria 3164
88 Ga0495582_0314605 3300046473 Bacteria 901
89 Ga0495664_0146884 3300046477 Bacteria 1430
90 Ga0495640_0031542 3300046533 Bacteria 3781
91 Ga0495645_0448394 3300046543 Bacteria 814
92 Ga0495599_0167870 3300046678 Bacteria 1355
93 Ga0495658_0030722 3300046683 Bacteria 2920
94 Ga0495613_0158915 3300046689 Bacteria 1609
95 Ga0495674_0022206 3300047319 Bacteria 5853
96 Ga0495680_0066931 3300047322 Bacteria 2748
97 Ga0495680_0206693 3300047322 Bacteria 1407
98 Ga0495602_0267931 3300048088 Bacteria 1264
99 Ga0496102_0509384 3300048905 Bacteria 1126
100 Ga0496102_0550301 3300048905 Bacteria 1077
101 Ga0496103_0202469 3300048906 Bacteria 1277
102 Ga0496105_0670932 3300048908 Bacteria 798
103 Ga0496106_0386099 3300048909 Bacteria 1125
104 Ga0496109_0322776 3300048912 Bacteria 1457
105 Ga0496109_1525702 3300048912 Bacteria 603
106 Ga0496110_0389083 3300048913 Bacteria 1271
107 Ga0496111_0004501 3300048914 Bacteria 8817
108 Ga0496111_0899966 3300048914 Bacteria 637
109 Ga0496114_0368713 3300048917 Bacteria 1271
110 Ga0496115_0328163 3300048918 Bacteria 1251
111 Ga0496118_0020920 3300048921 Bacteria 5783
112 Ga0496122_0000384 3300048925 Bacteria 94131
113 Ga0496122_0000515 3300048925 Bacteria 79995
114 Ga0496123_0000074 3300048926 Bacteria 196689
115 Ga0496124_0002354 3300048927 Bacteria 24950
116 Ga0496125_0004660 3300048928 Bacteria 15639
117 Ga0496126_0032903 3300048929 Bacteria 4880
118 Ga0501031_0032624 3300049568 Bacteria 3396
119 Ga0501032_0127476 3300049569 Bacteria 1680
120 Ga0501033_0016623 3300049570 Bacteria 5566
121 Ga0501034_0568134 3300049571 Bacteria 1042
122 Ga0501036_0002262 3300049572 Bacteria 15043
123 Ga0501036_0279917 3300049572 Bacteria 1396
124 Ga0501038_0008365 3300049574 Bacteria 9515
125 Ga0501038_0023980 3300049574 Bacteria 5448
126 Ga0501039_0027386 3300049575 Bacteria 4382
127 Ga0501040_0021034 3300049576 Bacteria 4351
128 Ga0501040_0486013 3300049576 Bacteria 890
129 Ga0501041_0074762 3300049577 Bacteria 2082
130 Ga0501042_0004234 3300049578 Bacteria 9138
131 Ga0501043_0097742 3300049579 Bacteria 2308
132 Ga0501046_0018117 3300049580 Bacteria 5864
133 Ga0501046_0052287 3300049580 Bacteria 3220
134 Ga0501047_0058572 3300049581 Bacteria 3721
135 Ga0501048_0046322 3300049582 Bacteria 3104
136 Ga0501067_0141749 3300049583 Bacteria 1338
137 Ga0501069_0468777 3300049585 Bacteria 750
138 Ga0501071_0001299 3300049587 Bacteria 14229
139 Ga0501071_0524739 3300049587 Bacteria 909
140 Ga0501072_0016303 3300049588 Bacteria 5701
141 Ga0501074_0022625 3300049590 Bacteria 4570
142 Ga0501074_0438265 3300049590 Bacteria 927
143 Ga0501075_0001583 3300049591 Bacteria 14886
144 Ga0501075_0671083 3300049591 Bacteria 790
145 Ga0501077_0012145 3300049593 Bacteria 5390
146 Ga0501080_0176423 3300049742 Bacteria 1968
147 Ga0501081_0155423 3300049743 Bacteria 1645
148 Ga0501083_0047461 3300049744 Bacteria 2902
149 Ga0501083_0091406 3300049744 Bacteria 2009
150 Ga0501035_0020099 3300049822 Bacteria 6133
151 Ga0501044_0161384 3300049823 Bacteria 2218
152 Ga0501045_0038138 3300049824 Bacteria 3494
153 Ga0501045_0429871 3300049824 Bacteria 982
154 Ga0501045_0789001 3300049824 Bacteria 700
155 nmdc:mga06r32_5402_c1 3300050510 Bacteria 11498
156 Ga0495612_0353966 3300053078 Bacteria 663
157 Ga0501084_0025376 3300054114 Bacteria 4944
158 Ga0501084_1562633 3300054114 Bacteria 552
159 Ga0501082_0003264 3300060353 Bacteria 14155
160 Ga0501082_0016921 3300060353 Bacteria 6278
161 Ga0530510_0004103 3300061734 Bacteria 10053
162 2884997347 2884994152 Bacteria 4492978
163 2643852144 2643221567 Bacteria 4163945
164 2644083834 2643221613 Bacteria 4622396
165 2644136423 2643221624 Bacteria 4384879
166 2644447439 2643221679 Bacteria 3839507
167 2644524064 2643221694 Bacteria 4392972
168 2644666899 2643221721 Bacteria 4486924
169 2645720334 2643221961 Bacteria 3919167
170 2645723274 2643221962 Bacteria 3874254
171 2808872080 2808606365 Bacteria 4301966
172 2837274450 2837268691 Bacteria 7850704
173 2935894407 2935890801 Bacteria 4593001
174 Ga0070658_10409980
175 Ga0068869_101062898
176 Ga0070660_100146046
177 Ga0070675_100966066
178 Ga0070674_100146849
179 Ga0070673_100275585
180 Ga0070659_100647188
181 Ga0070678_100023640
182 Ga0070679_100015998
183 Ga0070679_100764543
184 Ga0070684_100669529
185 Ga0070672_100341182
186 Ga0068856_101725950
187 Ga0068861_100850190
188 Ga0068870_10149100
189 Ga0075428_100000545
190 Ga0075431_100023337
191 Ga0075431_100521209
192 Ga0075429_100181872
193 Ga0075429_100867234
194 Ga0105240_11359343
195 Ga0105245_12563591
196 Ga0114129_10046054
197 Ga0105243_10120821
198 Ga0105242_10341451
199 Ga0105238_10364692
200 Ga0105239_10479561
201 Ga0105239_11232647
202 Ga0105246_10147110
203 Ga0157372_10052911
204 Ga0157372_12262432
205 Ga0163163_11355099
206 Ga0182008_10351322
207 Ga0157377_10289926
208 Ga0207688_10094345
209 Ga0207643_10116103
210 Ga0207705_10261007
211 Ga0207705_10371013
212 Ga0207707_10012959
213 Ga0207657_10106803
214 Ga0207657_10602979
215 Ga0207652_10040285
216 Ga0207659_10817761
217 Ga0207690_10538378
218 Ga0207709_10376331
219 Ga0207669_10081812
220 Ga0207677_10218807
221 Ga0207703_10196928
222 Ga0207678_10223799
223 Ga0207683_10101939
224 Ga0207683_10398288
225 Ga0268266_10326794
226 Ga0316575_10010524
227 Ga0316579_10006866
228 Ga0316576_10006527
229 Ga0316576_10219538
230 Ga0316576_10533093
231 Ga0307405_10107266
232 Ga0307413_10281203
233 Ga0307413_10459042
234 Ga0307410_10408351
235 Ga0307406_10402123
236 Ga0307407_10073566
237 Ga0307412_10621195
238 Ga0307409_100010764
239 Ga0307409_100147585
240 Ga0307409_101425503
241 Ga0307416_100155287
242 Ga0307416_100659161
243 Ga0307416_101218652
244 Ga0307416_101646926
245 Ga0307414_10771184
246 Ga0307411_11111189
247 Ga0307415_100649189
248 Ga0316574_0047970
249 Ga0316584_0029639
250 Ga0373925_0115288
251 Ga0395899_0332243
252 Ga0395898_0042080
253 Ga0395898_0242233
254 Ga0436364_0948333
255 Ga0395901_0007438
256 Ga0395901_0208181
257 Ga0451791_1161680
258 Ga0439435_0067586
259 Ga0466960_0053999
260 Ga0466967_0068722
261 Ga0495582_0314605
262 Ga0495664_0146884
263 Ga0495640_0031542
264 Ga0495645_0448394
265 Ga0495599_0167870
266 Ga0495658_0030722
267 Ga0495613_0158915
268 Ga0495674_0022206
269 Ga0495680_0066931
270 Ga0495680_0206693
271 Ga0495602_0267931
272 Ga0496102_0509384
273 Ga0496102_0550301
274 Ga0496103_0202469
275 Ga0496105_0670932
276 Ga0496106_0386099
277 Ga0496109_0322776
278 Ga0496109_1525702
279 Ga0496110_0389083
280 Ga0496111_0004501
281 Ga0496111_0899966
282 Ga0496114_0368713
283 Ga0496115_0328163
284 Ga0496118_0020920
285 Ga0496122_0000384
286 Ga0496122_0000515
287 Ga0496123_0000074
288 Ga0496124_0002354
289 Ga0496125_0004660
290 Ga0496126_0032903
291 Ga0501031_0032624
292 Ga0501032_0127476
293 Ga0501033_0016623
294 Ga0501034_0568134
295 Ga0501036_0002262
296 Ga0501036_0279917
297 Ga0501038_0008365
298 Ga0501038_0023980
299 Ga0501039_0027386
300 Ga0501040_0021034
301 Ga0501040_0486013
302 Ga0501041_0074762
303 Ga0501042_0004234
304 Ga0501043_0097742
305 Ga0501046_0018117
306 Ga0501046_0052287
307 Ga0501047_0058572
308 Ga0501048_0046322
309 Ga0501067_0141749
310 Ga0501069_0468777
311 Ga0501071_0001299
312 Ga0501071_0524739
313 Ga0501072_0016303
314 Ga0501074_0022625
315 Ga0501074_0438265
316 Ga0501075_0001583
317 Ga0501075_0671083
318 Ga0501077_0012145
319 Ga0501080_0176423
320 Ga0501081_0155423
321 Ga0501083_0047461
322 Ga0501083_0091406
323 Ga0501035_0020099
324 Ga0501044_0161384
325 Ga0501045_0038138
326 Ga0501045_0429871
327 Ga0501045_0789001
328 nmdc:mga06r32_5402_c1
329 Ga0495612_0353966
330 Ga0501084_0025376
331 Ga0501084_1562633
332 Ga0501082_0003264
333 Ga0501082_0016921
334 Ga0530510_0004103
335 2884997347
336 2643852144
337 2644083834
338 2644136423
339 2644447439
340 2644524064
341 2644666899
342 2645720334
343 2645723274
344 2808872080
345 2837274450
346 2935894407

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04073

tRNA_edit

Aminoacyl-tRNA editing domain

46

166

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
1dbu-assembly1.cif.gz_A crystal structure of cysteinyl-trna(pro) deacylase protein from h. influenzae (hi1434) 0.8983 6 153
2cx5-assembly3.cif.gz_C crystal structure of a putative trans-editing enzyme for prolyl trna synthetase 0.8975 1 153
1dbx-assembly2.cif.gz_B crystal structure of cysteinyl-trna(pro) deacylase from h. influenzae (hi1434) 0.8944 6 153
3rij-assembly2.cif.gz_B epitope backbone grafting by computational design for improved presentation of linear epitopes on scaffold proteins 0.8936 3 153
3ri0-assembly2.cif.gz_B epitope backbone grafting by computational design for improved presentation of linear epitopes on scaffold proteins 0.8932 1 153
ID Description Score Start End Superfamily
af_Q2G0A0_1_158_3.90.960.10 Alpha Beta;Alpha-Beta Complex;YbaK protein;YbaK/aminoacyl-tRNA synthetase-associated domain 0.916 4 151 3.90.960.10
af_Q4DLP0_103_258_3.90.960.10 Alpha Beta;Alpha-Beta Complex;YbaK protein;YbaK/aminoacyl-tRNA synthetase-associated domain 0.9109 27 151 3.90.960.10
3rijC00 Alpha Beta;Alpha-Beta Complex;YbaK protein;YbaK/aminoacyl-tRNA synthetase-associated domain 0.8841 1 153 3.90.960.10
af_Q2G0A0_1_158_3.90.960.10 Alpha Beta;Alpha-Beta Complex;YbaK protein;YbaK/aminoacyl-tRNA synthetase-associated domain 0.8824 4 151 3.90.960.10
af_P64483_2_166_3.90.960.10 Alpha Beta;Alpha-Beta Complex;YbaK protein;YbaK/aminoacyl-tRNA synthetase-associated domain 0.8805 3 153 3.90.960.10
ID Description Score Start End GO Terms
AF-A0A5Q2MHG5-F1-model_v4 YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein 0.9986 3 153 GO:0002161
AF-A0A542DZS0-F1-model_v4 Cys-tRNA(Pro) deacylase 0.9982 3 153 GO:0002161
AF-A0A401UX48-F1-model_v4 YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein 0.9982 3 153 GO:0002161
AF-A0A553JYZ7-F1-model_v4 YbaK/EbsC family protein 0.998 1 153 GO:0002161
AF-A0A021VN67-F1-model_v4 Prolyl-tRNA synthetase 0.9969 3 153 GO:0002161
GO:0004812

Map