F263569

General Info

Members Datasets Scaffolds Average Seq Length
173 133 346 435

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2842718218|2842719007
Length 490
Sequence SPQQTALTPPADPSGQTMPARPSRRTLLQAGTLVLLLGAQQIARGAGILAVRVWPAQDYSRVTIESDRQLVAKQFFVATPPRLAVDIEGIDLNPELRELVAKVRPDDPNIAGIRVGQNAPGVVRLVVDLKRAALPQVFTLPPIAAYQHRLVFDLYPEVAEDPLEALIAERLRETPAPPVPSITARPGTVADPLGDLIAQHSVPGEKPAPAAPGVAAPATSPAPIVAAAPAVPPRAQPQAPAPAPAIARATDRLIIVALDPGHGGEDPGAIGPGGTREKDVVLKVAHLLRDRINATTVGGNPMRAFLTRDADYFVPLGTRVEKARRVQADLFVSIHADAFTTPKASGASVFALSQGGASSTAARWLANKENQADLVGGLNVKTQDQHVQRMLLDMSTTAQINDSLKLGSALLGEIGGMAKLHKPRVEQAGFAVLKAPDIPSVLVETAFISNPGEEAKLRSAVYQQQLADALMRGITRYFAKNPPLARSRSV

Samples

Sample ID Description Type Environment
1 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
2 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
7 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
10 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
11 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
12 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
13 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
14 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
15 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
16 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
17 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
18 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
19 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
20 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
21 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
22 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
23 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
24 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
25 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
26 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
27 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
28 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
29 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
30 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
31 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
32 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
33 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
49 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
52 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
53 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
54 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
55 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
56 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
57 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
58 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
59 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
60 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
61 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
62 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
63 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
64 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
65 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
66 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
67 3300042126 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0218F_E14_070516_87 Metagenome Rhizosphere
68 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
69 3300042129 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_070516_95 Metagenome Rhizosphere
70 3300042137 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913F_E14_072516_1519 Metagenome Rhizosphere
71 3300042139 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0727L_E14_072516_1442 Metagenome Rhizosphere
72 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
73 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
74 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
75 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
76 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
77 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
78 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
79 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
80 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
81 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
82 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
83 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
84 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
85 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
86 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
87 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
88 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
89 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
90 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
91 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
92 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
93 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
94 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
95 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
96 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
97 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
98 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
99 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
104 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
105 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
106 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
107 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
108 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
109 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
110 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
111 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
112 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
113 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
114 3300053729 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 endosphere Metagenome Endosphere
115 2842718218 Acidovorax sp. R-73343 Isolate Unclassified
116 2547132374 Acidovorax radicis N35 Isolate Unclassified
117 2585428062 Methylibium sp. CF059 Isolate Rhizosphere
118 2643221570 Acidovorax sp. Root568 Isolate Unclassified
119 2643221596 Acidovorax sp. Root70 Isolate Unclassified
120 2643221609 Acidovorax sp. Root217 Isolate Unclassified
121 2643221611 Acidovorax sp. Root219 Isolate Unclassified
122 2643221652 Acidovorax sp. Root402 Isolate Unclassified
123 2643221717 Acidovorax sp. Root267 Isolate Unclassified
124 2721755523 Delftia sp. HK171 Isolate Unclassified
125 2738543012 Acidovorax sp. CF301 Isolate Unclassified
126 2738543013 Variovorax sp. BT01 Isolate Unclassified
127 2816332133 Acidovorax radicis 2721A Isolate Unclassified
128 2839138175 Delftia acidovorans B15 Isolate Rhizosphere
129 2881101125 Ramlibacter rhizophilus CCTCC AB2015357 Isolate Rhizosphere
130 2894023352 Diaphorobacter ruginosibacter DSM 27467 Isolate Nodule
131 2932422444 Comamonas sp. 4034 Isolate Rhizosphere
132 2974320154 Acidovorax wautersii SORGH_AS 335 Isolate Unclassified
133 2990710928 Acidovorax delafieldii SLBN-75 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.02
Metatranscriptomes 0
Isolates 10.98

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.03
Nodule 1.73
Rhizoplane 1.16
Rhizosphere 65.9
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055534_1001784 3300003784 Bacteria 8099
2 Ga0055531_10000078 3300003794 Bacteria 105599
3 Ga0070658_10204500 3300005327 Bacteria 1667
4 Ga0070670_100002981 3300005331 Bacteria 14015
5 Ga0070670_100036300 3300005331 Bacteria 4241
6 Ga0070670_100137375 3300005331 Bacteria 2113
7 Ga0068868_100091526 3300005338 Bacteria 2451
8 Ga0070668_100090118 3300005347 Bacteria 2416
9 Ga0070669_100009730 3300005353 Bacteria 6849
10 Ga0070669_100018203 3300005353 Bacteria 5018
11 Ga0070675_100033377 3300005354 Bacteria 4173
12 Ga0070675_100190112 3300005354 Bacteria 1779
13 Ga0070673_100047228 3300005364 Bacteria 3349
14 Ga0070673_100082455 3300005364 Bacteria 2610
15 Ga0070663_100030363 3300005455 Bacteria 3703
16 Ga0070672_100002742 3300005543 Bacteria 11279
17 Ga0070672_100019293 3300005543 Bacteria 4946
18 Ga0068864_100002334 3300005618 Bacteria 15682
19 Ga0068864_100005488 3300005618 Bacteria 10393
20 Ga0068864_100098410 3300005618 Bacteria 2591
21 Ga0068863_100040525 3300005841 Bacteria 4428
22 Ga0068863_100174457 3300005841 Bacteria 2063
23 Ga0068860_100011703 3300005843 Bacteria 8648
24 Ga0075365_10016161 3300006038 Bacteria 4531
25 Ga0075363_100026447 3300006048 Bacteria 2968
26 Ga0075362_10018150 3300006177 Bacteria 2907
27 Ga0075366_10064692 3300006195 Bacteria 2175
28 Ga0075370_10004686 3300006353 Bacteria 6673
29 Ga0075370_10013487 3300006353 Bacteria 4347
30 Ga0079104_1000002 3300006946 Bacteria 514469
31 Ga0105243_10001638 3300009148 Bacteria 19457
32 Ga0105242_10000656 3300009176 Bacteria 27099
33 Ga0163162_10119444 3300013306 Bacteria 2739
34 Ga0157375_10000680 3300013308 Bacteria 30126
35 Ga0163163_10003067 3300014325 Bacteria 14142
36 Ga0157376_10011284 3300014969 Bacteria 6578
37 Ga0157376_10238038 3300014969 Bacteria 1695
38 Ga0182007_10008796 3300015262 Bacteria 4119
39 Ga0213872_10000074 3300021361 Bacteria 90986
40 Ga0213872_10000361 3300021361 Bacteria 38243
41 Ga0209130_1009628 3300025284 Bacteria 2734
42 Ga0209675_1004386 3300025291 Bacteria 6293
43 Ga0209050_1003652 3300025298 Bacteria 11117
44 Ga0209051_1007284 3300025303 Bacteria 6071
45 Ga0209051_1018609 3300025303 Bacteria 3067
46 Ga0209257_1000032 3300025304 Bacteria 680354
47 Ga0207681_10007056 3300025923 Bacteria 6893
48 Ga0207650_10013458 3300025925 Bacteria 5665
49 Ga0207650_10037706 3300025925 Bacteria 3524
50 Ga0207650_10088679 3300025925 Bacteria 2359
51 Ga0207706_10185352 3300025933 Bacteria 1828
52 Ga0207686_10027024 3300025934 Bacteria 3356
53 Ga0207709_10000015 3300025935 Bacteria 493221
54 Ga0207691_10000958 3300025940 Bacteria 28614
55 Ga0207691_10017600 3300025940 Bacteria 6773
56 Ga0207689_10122984 3300025942 Bacteria 2134
57 Ga0207667_10135320 3300025949 Bacteria 2538
58 Ga0207651_10101945 3300025960 Bacteria 2132
59 Ga0207678_10008933 3300026067 Bacteria 8823
60 Ga0207641_10007366 3300026088 Bacteria 9162
61 Ga0207676_10000633 3300026095 Bacteria 28376
62 Ga0207676_10005025 3300026095 Bacteria 9364
63 Ga0207676_10059560 3300026095 Bacteria 3016
64 Ga0207675_100084413 3300026118 Bacteria 2980
65 Ga0207683_10160551 3300026121 Bacteria 2032
66 Ga0209281_1000007 3300027111 Bacteria 938265
67 Ga0268266_10074941 3300028379 Bacteria 2939
68 Ga0268264_10016520 3300028381 Bacteria 6042
69 Ga0307515_10000902 3300028794 Bacteria 68371
70 Ga0307515_10001283 3300028794 Bacteria 57022
71 Ga0307515_10088380 3300028794 Bacteria 3917
72 Ga0265330_10000033 3300031235 Bacteria 126931
73 Ga0265332_10000001 3300031238 Bacteria 863783
74 Ga0265325_10007654 3300031241 Bacteria 6455
75 Ga0307513_10001123 3300031456 Bacteria 38793
76 Ga0307513_10007193 3300031456 Bacteria 14457
77 Ga0307513_10036277 3300031456 Bacteria 5502
78 Ga0307513_10091908 3300031456 Bacteria 3091
79 Ga0307408_100000064 3300031548 Bacteria 122509
80 Ga0307408_100000079 3300031548 Bacteria 108053
81 Ga0307508_10000007 3300031616 Bacteria 268359
82 Ga0307514_10001840 3300031649 Bacteria 23499
83 Ga0265314_10000022 3300031711 Bacteria 297299
84 Ga0307406_10000132 3300031901 Bacteria 44227
85 Ga0307411_10068110 3300032005 Bacteria 2398
86 Ga0395899_0013974 3300037312 Bacteria 6131
87 Ga0395900_0054721 3300037418 Bacteria 4109
88 Ga0395898_0023197 3300037466 Bacteria 6272
89 Ga0395905_0003472 3300037471 Bacteria 16849
90 Ga0395905_0004559 3300037471 Bacteria 14346
91 Ga0395905_0005776 3300037471 Bacteria 12578
92 Ga0395905_0011242 3300037471 Bacteria 8654
93 Ga0395905_0260950 3300037471 Bacteria 1617
94 Ga0395905_0321706 3300037471 Bacteria 1436
95 Ga0436361_0167979 3300039447 Bacteria 86419
96 Ga0450888_000415 3300042126 Bacteria 4025
97 Ga0450890_001075 3300042127 Bacteria 3978
98 Ga0450891_001134 3300042129 Bacteria 2773
99 Ga0450902_005504 3300042137 Bacteria 1916
100 Ga0450904_001328 3300042139 Bacteria 3603
101 Ga0439464_0005857 3300042439 Bacteria 3191
102 Ga0451577_0000058 3300042876 Bacteria 272673
103 Ga0451577_0016472 3300042876 Bacteria 6846
104 Ga0466965_0006702 3300044683 Bacteria 5253
105 Ga0453684_0000279 3300044712 Bacteria 220016
106 Ga0453684_0031488 3300044712 Bacteria 7452
107 Ga0466960_0010576 3300044901 Bacteria 3835
108 Ga0466959_0005767 3300045049 Bacteria 8524
109 Ga0451576_0003816 3300045051 Bacteria 20272
110 Ga0451576_0014933 3300045051 Bacteria 8626
111 Ga0451576_0049368 3300045051 Bacteria 4415
112 Ga0451576_0089092 3300045051 Bacteria 3209
113 Ga0495638_0010271 3300046460 Bacteria 6511
114 Ga0495583_0001606 3300046506 Bacteria 22176
115 Ga0495583_0006161 3300046506 Bacteria 7897
116 Ga0495616_0002710 3300046513 Bacteria 11611
117 Ga0495620_0045465 3300046515 Bacteria 1901
118 Ga0495632_0003999 3300046519 Bacteria 10200
119 Ga0495632_0091527 3300046519 Bacteria 1441
120 Ga0495637_0012876 3300046520 Bacteria 3988
121 Ga0495643_0000183 3300046522 Bacteria 100113
122 Ga0495643_0049538 3300046522 Bacteria 2265
123 Ga0495644_0024230 3300046523 Bacteria 2308
124 Ga0495654_0005545 3300046530 Bacteria 7313
125 Ga0495597_0000268 3300046542 Bacteria 47622
126 Ga0495658_0045016 3300046683 Bacteria 2475
127 Ga0495615_0011049 3300048090 Bacteria 1824
128 Ga0495626_0003434 3300048091 Bacteria 10153
129 Ga0495626_0009651 3300048091 Bacteria 5206
130 Ga0496104_0181974 3300048907 Bacteria 2012
131 Ga0496108_0051426 3300048911 Bacteria 3452
132 Ga0496121_0101657 3300048924 Bacteria 2216
133 Ga0496122_0008992 3300048925 Bacteria 10617
134 Ga0496124_0000317 3300048927 Bacteria 89188
135 Ga0496125_0003634 3300048928 Bacteria 18481
136 Ga0496125_0010015 3300048928 Bacteria 9632
137 Ga0496126_0024890 3300048929 Bacteria 5771
138 Ga0501038_0058276 3300049574 Bacteria 3312
139 Ga0501043_0000149 3300049579 Bacteria 65122
140 Ga0501046_0000092 3300049580 Bacteria 97456
141 Ga0501047_0000028 3300049581 Bacteria 220279
142 Ga0501045_0000170 3300049824 Bacteria 35617
143 nmdc:mga07m45_122702_c1 3300050496 Bacteria 1501
144 nmdc:mga07m45_385_c1 3300050496 Bacteria 18118
145 Ga0500651_0045997 3300053093 Bacteria 2744
146 Ga0500607_082549 3300053121 Bacteria 1635
147 Ga0500642_0013532 3300053130 Bacteria 3003
148 Ga0500652_000537 3300053131 Bacteria 13345
149 Ga0500586_002730 3300053145 Bacteria 4048
150 Ga0500604_0008245 3300053151 Bacteria 2762
151 Ga0500622_0000202 3300053156 Bacteria 63233
152 Ga0500636_0000064 3300053177 Bacteria 51986
153 Ga0500637_0009184 3300053178 Bacteria 5021
154 Ga0500625_001050 3300053729 Bacteria 8883
155 2842719007 2842718218 Bacteria 4560148
156 2548500094 2547132374 Bacteria 5530232
157 2587755581 2585428062 Bacteria 6842168
158 2643864867 2643221570 Bacteria 5103772
159 2643991228 2643221596 Bacteria 5006805
160 2644059864 2643221609 Bacteria 6756331
161 2644074506 2643221611 Bacteria 6820941
162 2644293897 2643221652 Bacteria 5140275
163 2644644586 2643221717 Bacteria 5676132
164 2722882362 2721755523 Bacteria 6430384
165 2739241398 2738543012 Bacteria 7115078
166 2739252265 2738543013 Bacteria 5618633
167 2816473562 2816332133 Bacteria 7249298
168 2839142172 2839138175 Bacteria 6549354
169 2881101182 2881101125 Bacteria 4590519
170 2894024509 2894023352 Bacteria 5167372
171 2932426681 2932422444 Bacteria 4678430
172 2974324368 2974320154 Bacteria 4571377
173 2990711688 2990710928 Bacteria 5002431
174 Ga0055534_1001784
175 Ga0055531_10000078
176 Ga0070658_10204500
177 Ga0070670_100002981
178 Ga0070670_100036300
179 Ga0070670_100137375
180 Ga0068868_100091526
181 Ga0070668_100090118
182 Ga0070669_100009730
183 Ga0070669_100018203
184 Ga0070675_100033377
185 Ga0070675_100190112
186 Ga0070673_100047228
187 Ga0070673_100082455
188 Ga0070663_100030363
189 Ga0070672_100002742
190 Ga0070672_100019293
191 Ga0068864_100002334
192 Ga0068864_100005488
193 Ga0068864_100098410
194 Ga0068863_100040525
195 Ga0068863_100174457
196 Ga0068860_100011703
197 Ga0075365_10016161
198 Ga0075363_100026447
199 Ga0075362_10018150
200 Ga0075366_10064692
201 Ga0075370_10004686
202 Ga0075370_10013487
203 Ga0079104_1000002
204 Ga0105243_10001638
205 Ga0105242_10000656
206 Ga0163162_10119444
207 Ga0157375_10000680
208 Ga0163163_10003067
209 Ga0157376_10011284
210 Ga0157376_10238038
211 Ga0182007_10008796
212 Ga0213872_10000074
213 Ga0213872_10000361
214 Ga0209130_1009628
215 Ga0209675_1004386
216 Ga0209050_1003652
217 Ga0209051_1007284
218 Ga0209051_1018609
219 Ga0209257_1000032
220 Ga0207681_10007056
221 Ga0207650_10013458
222 Ga0207650_10037706
223 Ga0207650_10088679
224 Ga0207706_10185352
225 Ga0207686_10027024
226 Ga0207709_10000015
227 Ga0207691_10000958
228 Ga0207691_10017600
229 Ga0207689_10122984
230 Ga0207667_10135320
231 Ga0207651_10101945
232 Ga0207678_10008933
233 Ga0207641_10007366
234 Ga0207676_10000633
235 Ga0207676_10005025
236 Ga0207676_10059560
237 Ga0207675_100084413
238 Ga0207683_10160551
239 Ga0209281_1000007
240 Ga0268266_10074941
241 Ga0268264_10016520
242 Ga0307515_10000902
243 Ga0307515_10001283
244 Ga0307515_10088380
245 Ga0265330_10000033
246 Ga0265332_10000001
247 Ga0265325_10007654
248 Ga0307513_10001123
249 Ga0307513_10007193
250 Ga0307513_10036277
251 Ga0307513_10091908
252 Ga0307408_100000064
253 Ga0307408_100000079
254 Ga0307508_10000007
255 Ga0307514_10001840
256 Ga0265314_10000022
257 Ga0307406_10000132
258 Ga0307411_10068110
259 Ga0395899_0013974
260 Ga0395900_0054721
261 Ga0395898_0023197
262 Ga0395905_0003472
263 Ga0395905_0004559
264 Ga0395905_0005776
265 Ga0395905_0011242
266 Ga0395905_0260950
267 Ga0395905_0321706
268 Ga0436361_0167979
269 Ga0450888_000415
270 Ga0450890_001075
271 Ga0450891_001134
272 Ga0450902_005504
273 Ga0450904_001328
274 Ga0439464_0005857
275 Ga0451577_0000058
276 Ga0451577_0016472
277 Ga0466965_0006702
278 Ga0453684_0000279
279 Ga0453684_0031488
280 Ga0466960_0010576
281 Ga0466959_0005767
282 Ga0451576_0003816
283 Ga0451576_0014933
284 Ga0451576_0049368
285 Ga0451576_0089092
286 Ga0495638_0010271
287 Ga0495583_0001606
288 Ga0495583_0006161
289 Ga0495616_0002710
290 Ga0495620_0045465
291 Ga0495632_0003999
292 Ga0495632_0091527
293 Ga0495637_0012876
294 Ga0495643_0000183
295 Ga0495643_0049538
296 Ga0495644_0024230
297 Ga0495654_0005545
298 Ga0495597_0000268
299 Ga0495658_0045016
300 Ga0495615_0011049
301 Ga0495626_0003434
302 Ga0495626_0009651
303 Ga0496104_0181974
304 Ga0496108_0051426
305 Ga0496121_0101657
306 Ga0496122_0008992
307 Ga0496124_0000317
308 Ga0496125_0003634
309 Ga0496125_0010015
310 Ga0496126_0024890
311 Ga0501038_0058276
312 Ga0501043_0000149
313 Ga0501046_0000092
314 Ga0501047_0000028
315 Ga0501045_0000170
316 nmdc:mga07m45_122702_c1
317 nmdc:mga07m45_385_c1
318 Ga0500651_0045997
319 Ga0500607_082549
320 Ga0500642_0013532
321 Ga0500652_000537
322 Ga0500586_002730
323 Ga0500604_0008245
324 Ga0500622_0000202
325 Ga0500636_0000064
326 Ga0500637_0009184
327 Ga0500625_001050
328 2842719007
329 2548500094
330 2587755581
331 2643864867
332 2643991228
333 2644059864
334 2644074506
335 2644293897
336 2644644586
337 2722882362
338 2739241398
339 2739252265
340 2816473562
341 2839142172
342 2881101182
343 2894024509
344 2932426681
345 2974324368
346 2990711688

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01520

Amidase_3

N-acetylmuramoyl-L-alanine amidase

256

476

0.99

PF11741

AMIN

AMIN domain

50

154

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
8c2o-assembly2.cif.gz_B structure of e. coli amia 0.9529 192 419
8c2o-assembly2.cif.gz_B structure of e. coli amia 0.9366 192 419
4rn7-assembly1.cif.gz_A the crystal structure of n-acetylmuramoyl-l-alanine amidase from clostridium difficile 630 0.9345 191 416
8c0j-assembly1.cif.gz_A structure of amib enzymatic domain bound to the envc lytm domain 0.908 190 420
8c0j-assembly2.cif.gz_C structure of amib enzymatic domain bound to the envc lytm domain 0.9074 190 420
ID Description Score Start End Superfamily
4binA01 Mainly Beta;Sandwich;Immunoglobulin-like; 0.9769 37 146 2.60.40.3500
4binA02 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn-dependent exopeptidases 0.9495 186 417 3.40.630.40
4rn7A00 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn-dependent exopeptidases 0.934 191 416 3.40.630.40
4binA01 Mainly Beta;Sandwich;Immunoglobulin-like; 0.9193 37 146 2.60.40.3500
3ne8A00 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn-dependent exopeptidases 0.9168 190 423 3.40.630.40
ID Description Score Start End GO Terms
AF-A0A2J4RDS3-F1-model_v4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.9468 190 419 GO:0008745
GO:0009253
GO:0030288
AF-A0A4Y3TVG1-F1-model_v4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.9441 192 420 GO:0008745
GO:0009253
GO:0030288
AF-A0A514END5-F1-model_v4 deleted 0.9436 190 419
AF-A0A2X5CLD8-F1-model_v4 deleted 0.942 190 419
AF-A0A252BXM2-F1-model_v4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.9416 192 419 GO:0008745
GO:0009253
GO:0030288

Map