F261745

General Info

Members Datasets Scaffolds Average Seq Length
172 136 120 603

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8003856774|8003861889
Length 683
Sequence SRLRNRLGRRWGKGARDRSEAVQEGTFPRTPATRRGVRCDRRHNRAGSALPNPLGKDEGAELWLTAGESVTTRTSRDVLGRGLRVLGRAIREQPRIFAVAVTGSVLFGLLVIAGAYVVGAVVGEVVVPSIAAGRVEWGALALAAALLLGISLLRVAAIFGRRLGAGYMQFRLQAAYRRRVTRRYLDLPLSWHHRHATGTLLSNANSDVEATWYPIAPLPFAVGTVVMLVAAIVSLFVTDWVLALVGLAIFPALFMLNVVYSRRMAPRQARAQRIRAEVSAIAHESFDGALVVKTMGREAQETTRFAARAGELRDALIAVGRLRGVFDPLLETLPSLGTLAVLVVGAIRLRQGAITVTELVSVAFLFTVLAFPVRAIGWVLAEVPRSVAGWDRVQQVLRATGDMPYGTATLPGDGTTPATLEFDDVWFGYEPAEEHTPGTEVLGEVSFTVPAGRTVALVGPTGSGKSTIAALALRLVDPRAGTVRIDGVDIRDLTLAALTSTAALVAQVPFVFDDTVRANITLDRPGIDDAAVWAALRLAEADGFVAALPDGLDTMVGERGTSLSGGQRQRLTLARALAGRPRLLVLDDATSAVDPRVEAAILAALRDDAAGPAATILVVAYRRATIALADEVVYVEQGRVVARGAHDTLLATVPGYADLVTAYEQAEAERERERTHTDEEAIR

Samples

Sample ID Description Type Environment
1 2501939600 Micromonospora sp. L5 Isolate Unclassified
2 2515154088 Salinispora arenicola CNT800 Isolate Rhizosphere
3 2515154129 Salinispora pacifica CNS103 Isolate Rhizosphere
4 2515154137 Salinispora arenicola CNX482 Isolate Rhizosphere
5 2515154202 Salinispora pacifica CNT084 Isolate Rhizosphere
6 2515154203 Salinispora arenicola CNR921 Isolate Rhizosphere
7 2622736626 Micromonospora rhizosphaerae DSM 45431 Isolate Rhizosphere
8 2643221567 Phycicoccus sp. Root563 Isolate Unclassified
9 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
10 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
11 2772190715 Micromonospora chokoriensis NRRL B-24750 Isolate Unclassified
12 2831935698 Jishengella sp. AZ1-13 Isolate Unclassified
13 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
14 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
15 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
16 2855683550 Micromonospora sp. RP3T Isolate Unclassified
17 2856858025 Micromonospora aurantiaca 110B(2018) Isolate Unclassified
18 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
19 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
20 2858868258 Micromonospora sp. MH33 Isolate Unclassified
21 2858882152 Micromonospora noduli MED15 Isolate Nodule
22 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
23 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
24 2858902515 Micromonospora sp. MW-13 Isolate Rhizosphere
25 2861520306 Phytomonospora endophytica DSM 45386 Isolate Unclassified
26 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
27 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
28 2867312974 Micromonospora musae NGC1-4 Isolate Unclassified
29 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
30 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
31 2869048445 Micromonospora saelicesensis PSN01 Isolate Unclassified
32 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
33 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
34 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
35 2880495981 Micromonospora vinacea DSM 101695 Isolate Unclassified
36 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
37 2902582711 Micromonospora sp. AP08 Isolate Unclassified
38 2919446982 Phycicoccus sp. 3266 Isolate Rhizosphere
39 2929219909 Micromonospora sp. R-75348 Hybrid assembly Isolate Unclassified
40 2929226422 Micromonospora sp. R-74116 Hybrid assembly Isolate Unclassified
41 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
42 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
43 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
44 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
45 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
46 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
47 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
48 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
49 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
50 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
51 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
52 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
53 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
54 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
55 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
56 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
57 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
58 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
59 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
60 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
61 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
62 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
63 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
64 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
65 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
66 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
67 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
68 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
69 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
70 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
86 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
87 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
88 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
89 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
90 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
91 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
92 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
93 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
94 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
95 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
96 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
97 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
98 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
99 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
100 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
101 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
102 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
103 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
104 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
105 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
106 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
107 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
108 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
109 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
110 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
111 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
112 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
113 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
114 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
115 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
117 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
118 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
119 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
120 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
121 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
122 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
123 3300053100 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 endosphere Metagenome Endosphere
124 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
125 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
126 649633069 Micromonospora sp. L5 Isolate Unclassified
127 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
128 8003830390 Micromonospora parastrephiae STR1_7 Isolate Rhizosphere
129 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
130 8003870546 Micromonospora tarensis STR1s_6 Isolate Rhizosphere
131 8054704163 Micromonospora trifolii NIE79 Isolate Nodule
132 8054727385 Micromonospora alfalfae MED01 Isolate Nodule
133 8054734606 Micromonospora hortensis NIE111 Isolate Nodule
134 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule
135 8056054917 Glycomyces luteolus NEAU-A15 Isolate Rhizosphere
136 8057568493 Actinorhabdospora filicis NBRC 111898 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 69.77
Metatranscriptomes 0
Isolates 30.23

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.33
Nodule 3.49
Rhizoplane 2.33
Rhizosphere 63.37
Stem 0
Stem Tuber 0
Unclassified 28.49

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10021964 3300005327 Bacteria 5118
2 Ga0070683_100014319 3300005329 Bacteria 6936
3 Ga0068868_100003191 3300005338 Bacteria 11406
4 Ga0070661_100007590 3300005344 Bacteria 7481
5 Ga0070692_10019606 3300005345 Bacteria 3266
6 Ga0070668_100003882 3300005347 Bacteria 11036
7 Ga0070675_100001724 3300005354 Bacteria 16147
8 Ga0070659_100021539 3300005366 Bacteria 4910
9 Ga0070659_100025941 3300005366 Bacteria 4508
10 Ga0070678_100020357 3300005456 Bacteria 4352
11 Ga0070662_100000928 3300005457 Bacteria 17935
12 Ga0070679_100081829 3300005530 Bacteria 3218
13 Ga0070684_100002560 3300005535 Bacteria 13429
14 Ga0070664_100001072 3300005564 Bacteria 21527
15 Ga0070664_100020395 3300005564 Bacteria 5458
16 Ga0068857_100096434 3300005577 Bacteria 2650
17 Ga0068858_100000389 3300005842 Bacteria 46073
18 Ga0068860_100013288 3300005843 Bacteria 8075
19 Ga0068862_100079028 3300005844 Bacteria 2851
20 Ga0081539_10000370 3300005985 Bacteria 98520
21 Ga0081539_10000406 3300005985 Bacteria 91786
22 Ga0081539_10001654 3300005985 Bacteria 36124
23 Ga0081539_10006280 3300005985 Bacteria 11490
24 Ga0075428_100002061 3300006844 Bacteria 21674
25 Ga0075428_100056557 3300006844 Bacteria 4297
26 Ga0075428_100073712 3300006844 Bacteria 3729
27 Ga0075430_100001865 3300006846 Bacteria 17238
28 Ga0075430_100053316 3300006846 Bacteria 3406
29 Ga0075431_100002872 3300006847 Bacteria 16666
30 Ga0075431_100010130 3300006847 Bacteria 9473
31 Ga0075429_100002005 3300006880 Bacteria 16916
32 Ga0111539_10021809 3300009094 Bacteria 7876
33 Ga0105245_10012500 3300009098 Bacteria 7388
34 Ga0114129_10000059 3300009147 Bacteria 98984
35 Ga0114129_10000154 3300009147 Bacteria 73220
36 Ga0114129_10011827 3300009147 Bacteria 12413
37 Ga0114129_10018469 3300009147 Bacteria 9933
38 Ga0114129_10045098 3300009147 Bacteria 6199
39 Ga0114129_10140450 3300009147 Bacteria 3311
40 Ga0105248_10029330 3300009177 Bacteria 6138
41 Ga0157377_10013460 3300014745 Bacteria 4140
42 Ga0157379_10000039 3300014968 Bacteria 79484
43 Ga0207705_10007608 3300025909 Bacteria 7964
44 Ga0207659_10007074 3300025926 Bacteria 6888
45 Ga0207687_10019884 3300025927 Bacteria 4453
46 Ga0207690_10010312 3300025932 Bacteria 5547
47 Ga0207706_10004590 3300025933 Bacteria 12962
48 Ga0207711_10021553 3300025941 Bacteria 5383
49 Ga0207689_10006999 3300025942 Bacteria 9916
50 Ga0207661_10011263 3300025944 Bacteria 6472
51 Ga0207661_10019562 3300025944 Bacteria 5051
52 Ga0207679_10013357 3300025945 Bacteria 5381
53 Ga0207668_10000634 3300025972 Bacteria 21686
54 Ga0207677_10014589 3300026023 Bacteria 4595
55 Ga0207703_10000001 3300026035 Bacteria 822925
56 Ga0207703_10015484 3300026035 Bacteria 5945
57 Ga0207708_10002358 3300026075 Bacteria 13874
58 Ga0207674_10006060 3300026116 Bacteria 14302
59 Ga0268264_10019599 3300028381 Bacteria 5526
60 Ga0307515_10002200 3300028794 Bacteria 42791
61 Ga0307515_10006253 3300028794 Bacteria 23892
62 Ga0307515_10033667 3300028794 Bacteria 8424
63 Ga0307512_10003927 3300030522 Bacteria 16644
64 Ga0307512_10013219 3300030522 Bacteria 7747
65 Ga0307512_10021917 3300030522 Bacteria 5752
66 Ga0307512_10029061 3300030522 Bacteria 4837
67 Ga0307513_10000001 3300031456 Bacteria 1660464
68 Ga0307513_10016713 3300031456 Bacteria 8830
69 Ga0307513_10025506 3300031456 Bacteria 6844
70 Ga0307509_10002147 3300031507 Bacteria 32420
71 Ga0307509_10052847 3300031507 Bacteria 4336
72 Ga0307508_10002972 3300031616 Bacteria 17504
73 Ga0307508_10002978 3300031616 Bacteria 17475
74 Ga0307508_10053946 3300031616 Bacteria 3565
75 Ga0307508_10116731 3300031616 Bacteria 2271
76 Ga0307516_10025839 3300031730 Bacteria 5972
77 Ga0307405_10035351 3300031731 Bacteria 2983
78 Ga0307406_10041371 3300031901 Bacteria 2871
79 Ga0307406_10106599 3300031901 Bacteria 1920
80 Ga0307411_10036841 3300032005 Bacteria 3070
81 Ga0307415_100018431 3300032126 Bacteria 4216
82 Ga0307415_100028713 3300032126 Bacteria 3544
83 Ga0307510_10115683 3300033180 Bacteria 2406
84 Ga0373940_0005297 3300035088 Bacteria 2784
85 Ga0373951_0000257 3300035091 Bacteria 17381
86 Ga0373942_0000273 3300035207 Bacteria 13907
87 Ga0395900_0122389 3300037418 Bacteria 2669
88 Ga0395900_0125642 3300037418 Bacteria 2631
89 Ga0395898_0005189 3300037466 Bacteria 14089
90 Ga0395901_0025257 3300038443 Bacteria 6099
91 Ga0439433_0006189 3300041999 Bacteria 2575
92 Ga0439449_0002175 3300042007 Bacteria 7704
93 Ga0439457_005380 3300042014 Bacteria 3230
94 Ga0466957_0041013 3300044842 Bacteria 2799
95 Ga0495629_0050135 3300046459 Bacteria 2925
96 Ga0495606_0003729 3300046507 Bacteria 15888
97 Ga0495668_0001119 3300046616 Bacteria 27662
98 Ga0495625_0000837 3300046660 Bacteria 42274
99 Ga0495626_0000633 3300048091 Bacteria 34113
100 Ga0496102_0081235 3300048905 Bacteria 2988
101 Ga0496108_0000481 3300048911 Bacteria 31977
102 Ga0496108_0219811 3300048911 Bacteria 1651
103 Ga0496110_0035937 3300048913 Bacteria 4302
104 Ga0496126_0000022 3300048929 Bacteria 464393
105 Ga0501047_0003118 3300049581 Bacteria 15729
106 Ga0501070_0020073 3300049586 Bacteria 5603
107 nmdc:mga05p37_29746_c1 3300050507 Bacteria 6665
108 nmdc:mga05p37_8500_c1 3300050507 Bacteria 8592
109 nmdc:mga05p37_8869_c1 3300050507 Bacteria 11882
110 nmdc:mga05p37_947_c1 3300050507 Bacteria 32746
111 nmdc:mga09592_1062_c1 3300050508 Bacteria 21798
112 nmdc:mga09592_7948_c1 3300050508 Bacteria 8617
113 nmdc:mga0qj67_30720_c1 3300050509 Bacteria 4183
114 nmdc:mga0qj67_31_c1 3300050509 Bacteria 21553
115 nmdc:mga06r32_19_c1 3300050510 Bacteria 98901
116 nmdc:mga08y16_10771_c1 3300050511 Bacteria 9597
117 Ga0500646_0000174 3300053090 Bacteria 19152
118 Ga0500660_016703 3300053100 Bacteria 3938
119 Ga0500652_028499 3300053131 Bacteria 2170
120 Ga0500568_0005618 3300053139 Bacteria 6460

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048911 Ga0496108_0219811 Ga0496108_0219811_34_1557 481
2 3300005366 Ga0070659_100021539 Ga0070659_1000215392 533
3 3300005530 Ga0070679_100081829 Ga0070679_1000818293 533
4 3300025941 Ga0207711_10021553 Ga0207711_100215531 533
5 3300025944 Ga0207661_10011263 Ga0207661_100112636 533
6 3300048913 Ga0496110_0035937 Ga0496110_0035937_146_1924 545
7 3300031731 Ga0307405_10035351 Ga0307405_100353512 552
8 3300032005 Ga0307411_10036841 Ga0307411_100368413 552
9 3300009147 Ga0114129_10011827 Ga0114129_100118276 564
10 3300050508 nmdc:mga09592_7948_c1 nmdc:mga09592_7948_c1_806_2527 564
11 3300050509 nmdc:mga0qj67_30720_c1 nmdc:mga0qj67_30720_c1_1056_2777 564
12 3300005329 Ga0070683_100014319 Ga0070683_1000143192 565
13 3300005564 Ga0070664_100020395 Ga0070664_1000203952 565
14 3300025944 Ga0207661_10019562 Ga0207661_100195622 565
15 3300049586 Ga0501070_0020073 Ga0501070_0020073_2493_4361 569
16 3300053139 Ga0500568_0005618 Ga0500568_0005618_2387_4327 569
17 3300005842 Ga0068858_100000389 Ga0068858_10000038928 570
18 3300009147 Ga0114129_10000154 Ga0114129_100001549 570
19 3300009177 Ga0105248_10029330 Ga0105248_100293306 570
20 3300014968 Ga0157379_10000039 Ga0157379_1000003958 570
21 3300026035 Ga0207703_10000001 Ga0207703_10000001612 570
22 3300050507 nmdc:mga05p37_8869_c1 nmdc:mga05p37_8869_c1_8837_10786 570
23 3300035088 Ga0373940_0005297 Ga0373940_0005297_73_1809 571
24 3300035207 Ga0373942_0000273 Ga0373942_0000273_6732_8468 571
25 3300009147 Ga0114129_10000059 Ga0114129_100000599 573
26 3300050507 nmdc:mga05p37_947_c1 nmdc:mga05p37_947_c1_23464_25230 573
27 3300050508 nmdc:mga09592_1062_c1 nmdc:mga09592_1062_c1_7526_9292 573
28 3300050509 nmdc:mga0qj67_31_c1 nmdc:mga0qj67_31_c1_7281_9047 573
29 3300050510 nmdc:mga06r32_19_c1 nmdc:mga06r32_19_c1_89610_91376 573
30 3300049581 Ga0501047_0003118 Ga0501047_0003118_11695_13440 574
31 iso_pu_bacteria 2751185782 2753268255 575
32 3300031616 Ga0307508_10116731 Ga0307508_101167312 576
33 3300053100 Ga0500660_016703 Ga0500660_016703_983_2833 576
34 3300031616 Ga0307508_10053946 Ga0307508_100539462 577
35 3300032126 Ga0307415_100028713 Ga0307415_1000287132 577
36 3300046459 Ga0495629_0050135 Ga0495629_0050135_604_2355 577
37 3300037418 Ga0395900_0125642 Ga0395900_0125642_283_2040 578
38 3300005347 Ga0070668_100003882 Ga0070668_1000038827 579
39 3300005843 Ga0068860_100013288 Ga0068860_1000132885 579
40 3300005844 Ga0068862_100079028 Ga0068862_1000790282 579
41 3300025972 Ga0207668_10000634 Ga0207668_1000063417 579
42 3300026035 Ga0207703_10015484 Ga0207703_100154844 579
43 3300028381 Ga0268264_10019599 Ga0268264_100195991 579
44 3300031507 Ga0307509_10002147 Ga0307509_1000214730 579
45 3300006844 Ga0075428_100056557 Ga0075428_1000565572 581
46 3300006846 Ga0075430_100053316 Ga0075430_1000533162 581
47 3300030522 Ga0307512_10013219 Ga0307512_100132195 581
48 3300006844 Ga0075428_100002061 Ga0075428_1000020619 583
49 3300006846 Ga0075430_100001865 Ga0075430_1000018659 583
50 3300006847 Ga0075431_100002872 Ga0075431_1000028729 583
51 3300006880 Ga0075429_100002005 Ga0075429_1000020059 583
52 3300028794 Ga0307515_10033667 Ga0307515_100336673 583
53 3300028794 Ga0307515_10002200 Ga0307515_100022008 584
54 3300031507 Ga0307509_10052847 Ga0307509_100528472 584
55 3300031616 Ga0307508_10002972 Ga0307508_1000297211 584
56 3300006844 Ga0075428_100073712 Ga0075428_1000737123 585
57 3300033180 Ga0307510_10115683 Ga0307510_101156832 585
58 3300053090 Ga0500646_0000174 Ga0500646_0000174_10337_12121 585
59 iso_pu_bacteria 2501939600 2501944197 585
60 iso_pu_bacteria 649633069 649814037 585
61 3300005985 Ga0081539_10000370 Ga0081539_100003707 586
62 3300009147 Ga0114129_10018469 Ga0114129_100184694 586
63 3300009147 Ga0114129_10045098 Ga0114129_100450985 586
64 3300038443 Ga0395901_0025257 Ga0395901_0025257_1070_2875 586
65 3300050507 nmdc:mga05p37_29746_c1 nmdc:mga05p37_29746_c1_152_1936 586
66 3300050507 nmdc:mga05p37_8500_c1 nmdc:mga05p37_8500_c1_1397_3175 586
67 3300005985 Ga0081539_10001654 Ga0081539_100016547 587
68 iso_pu_bacteria 2902582711 2902583485 587
69 3300009094 Ga0111539_10021809 Ga0111539_100218094 588
70 3300009098 Ga0105245_10012500 Ga0105245_100125005 588
71 3300014745 Ga0157377_10013460 Ga0157377_100134602 588
72 3300048911 Ga0496108_0000481 Ga0496108_0000481_14105_15892 588
73 3300050511 nmdc:mga08y16_10771_c1 nmdc:mga08y16_10771_c1_2755_4545 588
74 iso_pu_bacteria 2861520306 2861520956 588
75 iso_pu_bacteria 8057568493 8057568651 588
76 3300006847 Ga0075431_100010130 Ga0075431_1000101302 590
77 3300030522 Ga0307512_10029061 Ga0307512_100290614 590
78 3300031456 Ga0307513_10025506 Ga0307513_100255062 590
79 iso_pu_bacteria 2919446982 2919450585 590
80 3300005985 Ga0081539_10006280 Ga0081539_100062802 591
81 3300031456 Ga0307513_10000001 Ga0307513_100000011350 591
82 3300031901 Ga0307406_10041371 Ga0307406_100413712 591
83 3300046507 Ga0495606_0003729 Ga0495606_0003729_212_2086 591
84 3300046616 Ga0495668_0001119 Ga0495668_0001119_11323_13197 591
85 3300046660 Ga0495625_0000837 Ga0495625_0000837_13912_15786 591
86 3300048091 Ga0495626_0000633 Ga0495626_0000633_4557_6431 591
87 3300048929 Ga0496126_0000022 Ga0496126_0000022_81389_83254 591
88 iso_pu_bacteria 2675903059 2676483604 591
89 3300005338 Ga0068868_100003191 Ga0068868_1000031912 592
90 3300005344 Ga0070661_100007590 Ga0070661_1000075905 592
91 3300005345 Ga0070692_10019606 Ga0070692_100196061 592
92 3300005354 Ga0070675_100001724 Ga0070675_1000017246 592
93 3300005366 Ga0070659_100025941 Ga0070659_1000259412 592
94 3300005456 Ga0070678_100020357 Ga0070678_1000203573 592
95 3300005457 Ga0070662_100000928 Ga0070662_10000092812 592
96 3300005535 Ga0070684_100002560 Ga0070684_1000025608 592
97 3300005564 Ga0070664_100001072 Ga0070664_10000107217 592
98 3300005577 Ga0068857_100096434 Ga0068857_1000964342 592
99 3300009147 Ga0114129_10140450 Ga0114129_101404502 592
100 3300025926 Ga0207659_10007074 Ga0207659_100070743 592
101 3300025927 Ga0207687_10019884 Ga0207687_100198842 592
102 3300025932 Ga0207690_10010312 Ga0207690_100103124 592
103 3300025933 Ga0207706_10004590 Ga0207706_100045902 592
104 3300025942 Ga0207689_10006999 Ga0207689_100069992 592
105 3300025945 Ga0207679_10013357 Ga0207679_100133574 592
106 3300026023 Ga0207677_10014589 Ga0207677_100145892 592
107 3300026075 Ga0207708_10002358 Ga0207708_100023582 592
108 3300026116 Ga0207674_10006060 Ga0207674_100060604 592
109 3300031901 Ga0307406_10106599 Ga0307406_101065991 592
110 3300041999 Ga0439433_0006189 Ga0439433_0006189_32_1873 592
111 3300042007 Ga0439449_0002175 Ga0439449_0002175_4669_6510 592
112 3300042014 Ga0439457_005380 Ga0439457_005380_1078_2919 592
113 3300005985 Ga0081539_10000406 Ga0081539_1000040643 593
114 3300030522 Ga0307512_10021917 Ga0307512_100219173 593
115 3300035091 Ga0373951_0000257 Ga0373951_0000257_8207_10009 593
116 3300044842 Ga0466957_0041013 Ga0466957_0041013_455_2365 593
117 3300031730 Ga0307516_10025839 Ga0307516_100258394 594
118 3300032126 Ga0307415_100018431 Ga0307415_1000184312 594
119 3300028794 Ga0307515_10006253 Ga0307515_1000625311 595
120 3300030522 Ga0307512_10003927 Ga0307512_1000392711 595
121 3300031456 Ga0307513_10016713 Ga0307513_100167136 595
122 3300031616 Ga0307508_10002978 Ga0307508_1000297811 595
123 3300037418 Ga0395900_0122389 Ga0395900_0122389_128_1957 595
124 3300037466 Ga0395898_0005189 Ga0395898_0005189_3133_4962 595
125 3300053131 Ga0500652_028499 Ga0500652_028499_302_2116 595
126 iso_pu_bacteria 2887478801 2887481205 596
127 iso_pu_bacteria 8001781756 8001789875 596
128 iso_pu_bacteria 8056054917 8056055101 596
129 3300048905 Ga0496102_0081235 Ga0496102_0081235_289_2130 597
130 iso_pu_bacteria 8003856774 8003861889 597
131 iso_pu_bacteria 2831935698 2831936247 600
132 iso_pu_bacteria 2856858025 2856864435 600
133 iso_pu_bacteria 2867507094 2867511816 600
134 iso_pu_bacteria 2832004796 2832009400 601
135 iso_pu_bacteria 2855683550 2855684677 601
136 iso_pu_bacteria 2866065130 2866070280 601
137 iso_pu_bacteria 2772190715 2772644251 602
138 iso_pu_bacteria 2855670206 2855676485 602
139 iso_pu_bacteria 2855676851 2855678593 602
140 iso_pu_bacteria 2857288857 2857294552 602
141 iso_pu_bacteria 2858848962 2858852066 602
142 iso_pu_bacteria 2858868258 2858875558 602
143 iso_pu_bacteria 2858882152 2858888677 602
144 iso_pu_bacteria 2858888857 2858888931 602
145 iso_pu_bacteria 2858895516 2858897474 602
146 iso_pu_bacteria 2858902515 2858905710 602
147 iso_pu_bacteria 2867302475 2867303588 602
148 iso_pu_bacteria 2867312974 2867316058 602
149 iso_pu_bacteria 2867319477 2867320924 602
150 iso_pu_bacteria 2869048445 2869050208 602
151 iso_pu_bacteria 2869061728 2869067298 602
152 iso_pu_bacteria 2869068681 2869074169 602
153 iso_pu_bacteria 2880489317 2880489732 602
154 iso_pu_bacteria 2880495981 2880502857 602
155 iso_pu_bacteria 2929219909 2929224646 602
156 iso_pu_bacteria 2929226422 2929232412 602
157 iso_pu_bacteria 2996221748 2996227621 602
158 iso_pu_bacteria 8003870546 8003873549 602
159 iso_pu_bacteria 8054704163 8054707818 602
160 iso_pu_bacteria 8054727385 8054732737 602
161 iso_pu_bacteria 8054734606 8054737988 602
162 iso_pu_bacteria 8055412473 8055413638 602
163 iso_pu_bacteria 2515154088 2515495179 603
164 iso_pu_bacteria 2515154129 2515719179 603
165 iso_pu_bacteria 2515154137 2515754866 603
166 iso_pu_bacteria 2515154202 2516083386 603
167 iso_pu_bacteria 2515154203 2516088509 603
168 iso_pu_bacteria 2643221567 2643849695 604
169 iso_pu_bacteria 2622736626 2623590770 606
170 iso_pu_bacteria 8003830390 8003836127 606
171 3300005327 Ga0070658_10021964 Ga0070658_100219643 614
172 3300025909 Ga0207705_10007608 Ga0207705_100076082 614

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00664

ABC_membrane

ABC transporter transmembrane region

99

373

0.92

PF00005

ABC_tran

ABC transporter

442

591

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
2ixf-assembly2.cif.gz_C crystal structure of the atpase domain of tap1 with atp (d645q, q678h mutant) 0.9308 340 578
4k8o-assembly1.cif.gz_A-2 crystal structure of the atpase domain of tap1 with atp (d645n, d651a mutant) 0.9302 340 578
3vx4-assembly1.cif.gz_A crystal structure of the nucleotide-binding domain of s. mutans coma, a bifunctional atp-binding cassette transporter involved in the quorum-sensing pathway 0.9248 343 575
2ixf-assembly2.cif.gz_D crystal structure of the atpase domain of tap1 with atp (d645q, q678h mutant) 0.9242 339 577
2fgk-assembly2.cif.gz_B crystal structure of the abc-cassette e631q mutant of hlyb with bound atp 0.9212 351 578
ID Description Score Start End Superfamily
5mkkB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9467 346 575 3.40.50.300
af_Q8IHR3_602_823_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9417 351 557 3.40.50.300
4k8oA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9368 349 575 3.40.50.300
3vx4D00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9318 349 576 3.40.50.300
af_P9WQJ1_326_578_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9307 343 584 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A444J7Z8-F1-model_v4 ABC transporter 0.9389 429 580 GO:0005524
GO:0015421
GO:0016887
AF-A0A0G2AFU2-F1-model_v4 Peptide-transporting atpase 0.9019 380 578 GO:0005524
GO:0016887
GO:0034040
AF-A0A257Y822-F1-model_v4 ABC transporter domain-containing protein 0.8953 366 575 GO:0005524
GO:0016887
GO:0034040
AF-A0A382C8K6-F1-model_v4 ABC transmembrane type-1 domain-containing protein 0.8948 153 304 GO:0005524
GO:0015421
GO:0016020
AF-A0A6P7HDW7-F1-model_v4 Multidrug resistance protein 1B-like 0.8943 344 578 GO:0005524
GO:0016020
GO:0016887
GO:0042626

Feature Viewer

pLDDT pTM Quality
82.9 0.59 Medium
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Predicted Structure (AlphaFold2)

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